Wall clock time and date at job start Tue Mar 31 2020 11:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00072 * 2 1 4 4 C 1.50697 * 109.47277 * 270.00493 * 3 2 1 5 5 H 1.08005 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99864 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00084 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46692 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47024 * 119.99474 * 8 6 4 11 11 H 1.48499 * 109.46858 * 239.99782 * 8 6 4 12 12 C 1.34775 * 119.99697 * 180.02562 * 2 1 3 13 13 O 1.21591 * 119.99756 * 180.02562 * 12 2 1 14 14 N 1.34775 * 120.00091 * 359.97438 * 12 2 1 15 15 C 1.39984 * 119.99783 * 184.58900 * 14 12 2 16 16 C 1.38983 * 119.99041 * 144.90856 * 15 14 12 17 17 C 1.38284 * 120.34307 * 180.34304 * 16 15 14 18 18 C 1.37903 * 120.06974 * 359.90859 * 17 16 15 19 19 C 1.39640 * 119.95069 * 359.45536 * 18 17 16 20 20 C 1.38704 * 119.99320 * 324.88701 * 15 14 12 21 21 C 1.47787 * 118.99621 * 181.73634 * 19 18 17 22 22 O 1.21558 * 120.28497 * 192.95967 * 21 19 18 23 23 N 1.34666 * 119.37993 * 13.16891 * 21 19 18 24 24 C 1.46502 * 119.47080 * 187.68913 * 23 21 19 25 25 C 1.46119 * 121.04936 * 7.41427 * 23 21 19 26 26 C 1.50628 * 120.60473 * 179.32765 * 18 17 16 27 27 H 1.09007 * 109.46774 * 269.99391 * 1 2 3 28 28 H 1.09000 * 109.47333 * 29.99712 * 1 2 3 29 29 H 1.09003 * 109.47559 * 149.99869 * 1 2 3 30 30 H 1.09003 * 109.47140 * 30.00433 * 3 2 1 31 31 H 1.08998 * 109.46934 * 149.99694 * 3 2 1 32 32 H 0.96999 * 120.00151 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00748 * 4.59286 * 14 12 2 34 34 H 1.07996 * 119.82751 * 0.36338 * 16 15 14 35 35 H 1.08003 * 119.96362 * 179.97438 * 17 16 15 36 36 H 1.07998 * 120.22125 * 0.03770 * 20 15 14 37 37 H 1.08999 * 109.47256 * 269.72400 * 24 23 21 38 38 H 1.08998 * 109.47184 * 29.73383 * 24 23 21 39 39 H 1.09010 * 109.46729 * 149.72703 * 24 23 21 40 40 H 1.08998 * 109.17345 * 80.47197 * 25 23 21 41 41 H 1.09000 * 109.17233 * 199.69141 * 25 23 21 42 42 H 1.08995 * 109.36326 * 26.47312 * 26 18 17 43 43 H 1.09005 * 109.25267 * 266.80819 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6726 7 7 3.5542 3.6175 -0.6730 8 14 3.4375 3.4172 -3.4339 9 1 2.8595 2.4173 -4.3672 10 1 2.8004 4.7383 -3.6664 11 1 4.9000 3.5248 -3.6679 12 6 2.1388 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0001 14 7 1.4649 -2.3344 -0.0005 15 6 2.1615 -3.5448 0.0959 16 6 1.6079 -4.6112 0.7944 17 6 2.2928 -5.8078 0.9003 18 6 3.5310 -5.9498 0.3101 19 6 4.0885 -4.8877 -0.4048 20 6 3.4038 -3.6797 -0.5060 21 6 5.3991 -5.0757 -1.0613 22 8 6.0154 -4.1175 -1.4853 23 7 5.9019 -6.3184 -1.1891 24 6 7.2696 -6.4953 -1.6834 25 6 5.1070 -7.4928 -0.8369 26 6 4.2942 -7.2428 0.4306 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5139 32 1 4.0310 4.4434 -0.8502 33 1 0.4973 -2.3358 -0.0674 34 1 0.6377 -4.5048 1.2566 35 1 1.8570 -6.6324 1.4449 36 1 3.8373 -2.8531 -1.0494 37 1 7.2543 -6.5882 -2.7693 38 1 7.8725 -5.6323 -1.4009 39 1 7.6996 -7.3972 -1.2476 40 1 4.4283 -7.7249 -1.6576 41 1 5.7731 -8.3401 -0.6739 42 1 3.5929 -8.0640 0.5780 43 1 4.9674 -7.1845 1.2860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136465151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:16 Heat of formation + Delta-G solvation = -46.766339 kcal Electronic energy + Delta-G solvation = -26346.600186 eV Core-core repulsion = 22584.112182 eV Total energy + Delta-G solvation = -3762.488004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02907 -41.24911 -39.34611 -37.55782 -36.70387 -35.90164 -34.70829 -32.88882 -32.24853 -30.12712 -29.14458 -28.14064 -27.38760 -25.55232 -24.33754 -24.24333 -22.73106 -21.05448 -20.29567 -19.15204 -18.73498 -18.59729 -17.63178 -17.31658 -17.09137 -16.64974 -16.60663 -16.20918 -15.76762 -15.49996 -14.99997 -14.91703 -14.72350 -14.43765 -14.36666 -14.17245 -13.92055 -13.60599 -13.53193 -13.40096 -13.21178 -13.11067 -12.87263 -12.71604 -12.59500 -12.41755 -12.23094 -12.11990 -11.74910 -11.34268 -11.04246 -10.94635 -10.68004 -10.05867 -9.74035 -9.57194 -8.96325 -8.25695 -6.40593 -0.20448 0.32498 1.30879 1.35394 1.45786 1.60804 1.75135 1.94567 2.15628 2.35705 2.84310 3.01181 3.05073 3.47526 3.72822 3.83282 4.05454 4.22766 4.26332 4.31556 4.33854 4.41138 4.52064 4.58635 4.63237 4.67810 4.77794 4.84856 4.87449 4.94060 4.96916 5.11320 5.14967 5.23617 5.30608 5.42647 5.45204 5.51235 5.55706 5.75397 5.99061 6.02182 6.04999 6.25225 6.67999 7.01519 7.03336 7.26542 7.59502 8.80989 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003535 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.575255 B = 7919.211079 C = 9397.864556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.276 3.724 4 C -0.545 4.545 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.284 1.284 12 C 0.687 3.313 13 O -0.624 6.624 14 N -0.673 5.673 15 C 0.138 3.862 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.066 4.066 19 C -0.146 4.146 20 C -0.097 4.097 21 C 0.544 3.456 22 O -0.592 6.592 23 N -0.612 5.612 24 C 0.081 3.919 25 C 0.106 3.894 26 C -0.092 4.092 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.034 0.966 31 H -0.005 1.005 32 H 0.268 0.732 33 H 0.423 0.577 34 H 0.171 0.829 35 H 0.188 0.812 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -30.352 4.315 31.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.354 5.354 3 C 0.154 3.846 4 C -0.583 4.583 5 H 0.067 0.933 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.186 1.186 11 H -0.211 1.211 12 C 0.389 3.611 13 O -0.503 6.503 14 N -0.325 5.325 15 C 0.043 3.957 16 C -0.125 4.125 17 C -0.108 4.108 18 C -0.068 4.068 19 C -0.150 4.150 20 C -0.119 4.119 21 C 0.334 3.666 22 O -0.473 6.473 23 N -0.345 5.345 24 C -0.061 4.061 25 C -0.015 4.015 26 C -0.129 4.129 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.264 0.736 34 H 0.188 0.812 35 H 0.206 0.794 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.173 -29.614 4.137 30.532 hybrid contribution 0.424 1.686 -1.172 2.096 sum -5.750 -27.928 2.965 28.667 Atomic orbital electron populations 1.21932 0.77555 1.04003 1.02914 1.47364 1.08166 1.04643 1.75227 1.18695 0.90896 0.79058 0.95915 1.21746 1.36984 1.06458 0.93138 0.93274 1.25834 0.94805 0.96446 1.01980 1.70044 1.38869 1.14842 1.32854 0.85393 0.77811 0.78573 0.79163 1.19538 1.18583 1.21054 1.16227 0.85065 0.81474 0.78320 1.90920 1.14287 1.86440 1.58693 1.42524 1.10650 1.02121 1.77227 1.17746 0.92997 0.86451 0.98527 1.21507 1.02529 0.91881 0.96552 1.21263 0.92733 0.97968 0.98800 1.20406 0.95638 0.94803 0.95969 1.19610 0.95540 0.95402 1.04452 1.21176 0.95724 0.96309 0.98682 1.18719 0.86116 0.83243 0.78486 1.90787 1.63008 1.42431 1.51099 1.47732 1.16224 1.05628 1.64878 1.21855 0.81064 1.03303 0.99876 1.21830 0.95519 0.86640 0.97527 1.20973 0.99401 0.94237 0.98286 0.90511 0.90771 0.89456 0.94761 0.98676 0.92311 0.73588 0.81166 0.79449 0.88976 0.92359 0.93568 0.86494 0.90609 0.85283 0.83822 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.64 16 2 N -0.62 -28.10 2.86 -869.31 -2.48 -30.59 16 3 C 0.28 15.78 5.16 85.63 0.44 16.22 16 4 C -0.54 -33.40 9.39 25.60 0.24 -33.16 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.51 5.46 84.65 0.46 0.97 16 7 N -0.93 -58.52 13.29 21.45 0.28 -58.23 16 8 Si 0.97 47.86 29.54 68.60 2.03 49.88 16 9 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 12 C 0.69 32.32 8.12 179.06 1.45 33.78 16 13 O -0.62 -37.17 13.36 -4.00 -0.05 -37.23 16 14 N -0.67 -22.48 5.22 -317.18 -1.65 -24.13 16 15 C 0.14 4.43 6.30 38.13 0.24 4.67 16 16 C -0.10 -2.01 9.95 22.46 0.22 -1.79 16 17 C -0.09 -1.30 9.70 22.20 0.22 -1.08 16 18 C -0.07 -1.32 5.69 -19.63 -0.11 -1.43 16 19 C -0.15 -4.86 5.79 -20.18 -0.12 -4.97 16 20 C -0.10 -3.97 8.27 22.62 0.19 -3.78 16 21 C 0.54 19.71 7.49 86.79 0.65 20.36 16 22 O -0.59 -28.71 16.17 -3.90 -0.06 -28.77 16 23 N -0.61 -14.26 3.19 -852.10 -2.72 -16.97 16 24 C 0.08 1.55 10.37 127.77 1.33 2.87 16 25 C 0.11 1.16 6.46 86.33 0.56 1.71 16 26 C -0.09 -0.87 6.04 29.70 0.18 -0.69 16 27 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 29 H 0.09 1.93 6.30 -2.39 -0.02 1.91 16 30 H 0.03 1.93 8.07 -2.39 -0.02 1.91 16 31 H 0.00 -0.33 7.42 -2.39 -0.02 -0.34 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 33 H 0.42 9.87 6.52 -92.71 -0.60 9.26 16 34 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.09 4.98 5.95 -2.91 -0.02 4.96 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.17 7.51 -2.39 -0.02 1.16 16 39 H 0.12 1.09 7.79 -2.38 -0.02 1.07 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.13 0.38 7.73 -2.39 -0.02 0.36 16 42 H 0.14 0.06 8.07 -2.39 -0.02 0.04 16 43 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -101.24 357.61 3.03 -98.21 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.44 Total: 10.50 kcal Atomic # 6 Polarization: 30.07 SS G_CDS: 7.26 Total: 37.33 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -6.57 Total: -129.93 kcal Atomic # 8 Polarization: -65.88 SS G_CDS: -0.12 Total: -66.00 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -101.24 3.03 -98.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136465151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.443 kcal (2) G-P(sol) polarization free energy of solvation -101.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds