Wall clock time and date at job start Tue Mar 31 2020 11:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40084 * 126.03474 * 2 1 4 4 C 1.30835 * 108.20293 * 180.23197 * 3 2 1 5 5 C 1.39870 * 108.20427 * 359.78717 * 4 3 2 6 6 C 1.50696 * 126.04414 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47192 * 102.06286 * 6 5 4 8 8 C 1.46903 * 111.00261 * 172.15516 * 7 6 5 9 9 C 1.50692 * 109.47397 * 192.15741 * 8 7 6 10 10 H 1.08007 * 120.00155 * 3.28913 * 9 8 7 11 11 C 1.37874 * 120.00167 * 183.29061 * 9 8 7 12 12 N 1.31512 * 120.00172 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00152 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46784 * 60.00105 * 13 11 9 15 15 H 1.48497 * 109.47138 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47377 * 300.00343 * 13 11 9 17 17 C 1.46899 * 111.00308 * 296.11237 * 7 6 5 18 18 C 1.53008 * 109.46831 * 293.49527 * 17 7 6 19 19 C 1.53001 * 117.49740 * 242.84718 * 18 17 7 20 20 C 1.52996 * 117.49665 * 174.18996 * 18 17 7 21 21 C 1.34946 * 126.03892 * 179.85175 * 2 1 3 22 22 C 1.50701 * 126.12264 * 0.03431 * 21 2 1 23 23 F 1.39899 * 109.47467 * 29.72225 * 22 21 2 24 24 F 1.39899 * 109.46878 * 149.72249 * 22 21 2 25 25 F 1.39900 * 109.47256 * 269.71931 * 22 21 2 26 26 H 1.09002 * 109.47006 * 270.15116 * 1 2 3 27 27 H 1.08998 * 109.46999 * 30.14539 * 1 2 3 28 28 H 1.08999 * 109.46754 * 150.14712 * 1 2 3 29 29 H 1.08001 * 125.90342 * 179.81630 * 4 3 2 30 30 H 1.08996 * 109.47711 * 222.06408 * 6 5 4 31 31 H 1.09003 * 109.47266 * 342.06821 * 6 5 4 32 32 H 1.09000 * 109.46749 * 312.15642 * 8 7 6 33 33 H 1.08999 * 109.47164 * 72.15129 * 8 7 6 34 34 H 0.96999 * 120.00468 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.47361 * 53.49355 * 17 7 6 36 36 H 1.08994 * 109.47391 * 173.49922 * 17 7 6 37 37 H 1.08994 * 115.54803 * 28.51879 * 18 17 7 38 38 H 1.09003 * 117.49702 * 0.02562 * 19 18 17 39 39 H 1.08993 * 117.49776 * 145.02170 * 19 18 17 40 40 H 1.09003 * 117.49420 * 214.98014 * 20 18 17 41 41 H 1.09003 * 117.50456 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0050 5 6 3.5437 -0.6665 -0.0035 6 6 4.7679 -1.5453 -0.0084 7 7 5.0035 -2.0644 1.3455 8 6 6.0747 -3.0698 1.3449 9 6 6.0886 -3.7898 2.6686 10 1 5.3402 -3.5642 3.4140 11 6 7.0567 -4.7365 2.9283 12 7 7.9682 -5.0109 2.0209 13 14 7.0743 -5.6286 4.5695 14 1 5.7965 -6.3641 4.7468 15 1 8.2061 -6.5895 4.5984 16 1 7.2339 -4.6418 5.6676 17 6 5.3056 -0.9740 2.2823 18 6 6.6459 -0.3374 1.9089 19 6 7.7799 -0.4268 2.9322 20 6 7.0760 0.9096 2.6840 21 6 2.2590 -1.0912 0.0028 22 6 1.7973 -2.5257 0.0058 23 9 0.5644 -2.6203 -0.6485 24 9 2.7392 -3.3200 -0.6570 25 9 1.6600 -2.9687 1.3257 26 1 -0.3633 0.0027 1.0277 27 1 -0.3633 0.8887 -0.5161 28 1 -0.3633 -0.8913 -0.5116 29 1 4.4054 1.3710 -0.0092 30 1 4.6150 -2.3777 -0.6951 31 1 5.6318 -0.9632 -0.3297 32 1 5.8993 -3.7869 0.5430 33 1 7.0347 -2.5778 1.1887 34 1 8.6491 -5.6772 2.2034 35 1 4.5188 -0.2214 2.2298 36 1 5.3618 -1.3708 3.2959 37 1 6.9145 -0.3919 0.8540 38 1 7.5712 -0.9394 3.8712 39 1 8.7945 -0.5397 2.5504 40 1 7.6279 1.6754 2.1389 41 1 6.4040 1.2769 3.4596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151630864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:56 Heat of formation + Delta-G solvation = -29.998329 kcal Electronic energy + Delta-G solvation = -28309.158263 eV Core-core repulsion = 24005.540634 eV Total energy + Delta-G solvation = -4303.617629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.07227 -47.68333 -47.41169 -41.44049 -37.97849 -35.18562 -33.49456 -32.52950 -31.34073 -28.37364 -27.06618 -26.09446 -25.52903 -23.41760 -21.82391 -21.51815 -21.24972 -20.66489 -19.15080 -18.38772 -18.22818 -17.48393 -16.17835 -15.84635 -15.70162 -15.38311 -14.84813 -14.60469 -14.41018 -14.24080 -14.11395 -13.99344 -13.88169 -13.72468 -13.59544 -13.38978 -12.89344 -12.73144 -12.42317 -12.23941 -11.99613 -11.66587 -11.33220 -11.08121 -11.00273 -10.92726 -10.79831 -10.53227 -10.44270 -9.94053 -9.74465 -9.67003 -9.20270 -9.15631 -8.53317 -8.34732 -7.17033 -5.95124 -3.94687 1.39937 2.06730 2.60580 2.75940 3.37118 3.41368 3.44665 3.69880 4.14169 4.36767 4.39179 4.47654 4.50806 4.97306 5.01749 5.04288 5.25108 5.29663 5.38042 5.40601 5.42074 5.52353 5.57100 5.69535 5.98277 6.06291 6.19672 6.24451 6.34411 6.45836 6.52587 6.53208 6.62979 6.70692 6.96583 7.32693 7.43896 7.47497 7.87062 8.15191 8.25355 8.61316 9.11876 9.68378 11.15570 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.005243 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.981857 B = 5338.703078 C = 6689.399968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.353 5.353 3 N -0.267 5.267 4 C 0.053 3.947 5 C -0.139 4.139 6 C 0.105 3.895 7 N -0.525 5.525 8 C 0.193 3.807 9 C -0.497 4.497 10 H 0.059 0.941 11 C 0.058 3.942 12 N -0.899 5.899 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.099 3.901 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.193 4.193 21 C -0.008 4.008 22 C 0.546 3.454 23 F -0.186 7.186 24 F -0.152 7.152 25 F -0.157 7.157 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.192 0.808 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.024 0.976 33 H 0.006 0.994 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 10.846 -5.312 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.137 5.137 3 N -0.089 5.089 4 C -0.132 4.132 5 C -0.152 4.152 6 C -0.024 4.024 7 N -0.248 5.248 8 C 0.068 3.932 9 C -0.536 4.536 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.539 5.539 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.030 4.030 18 C -0.188 4.188 19 C -0.196 4.196 20 C -0.231 4.231 21 C -0.136 4.136 22 C 0.490 3.510 23 F -0.167 7.167 24 F -0.133 7.133 25 F -0.138 7.138 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.208 0.792 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.869 11.430 -5.187 17.977 hybrid contribution 1.341 -1.021 0.652 1.807 sum -11.528 10.410 -4.534 16.181 Atomic orbital electron populations 1.22259 0.73648 1.05682 1.04164 1.48254 1.06618 1.02220 1.56611 1.77384 1.01851 1.06906 1.22723 1.23869 0.95201 0.94099 1.00076 1.20083 0.93447 0.94140 1.07485 1.20702 0.91367 0.96302 0.94026 1.62437 1.46688 1.11978 1.03731 1.19743 0.86943 0.88662 0.97806 1.21034 1.11945 1.20233 1.00361 0.92236 1.24902 0.95582 0.97068 0.96729 1.69937 1.16271 1.33653 1.34001 0.86670 0.77406 0.79578 0.84385 1.20309 1.21501 1.20419 1.21642 0.91425 0.91848 0.98107 1.22937 0.98539 1.00087 0.97283 1.22840 0.96918 0.98516 1.01309 1.22914 1.04752 0.91460 1.03988 1.20505 0.92975 0.87856 1.12277 1.17159 0.74225 0.84901 0.74731 1.93086 1.45155 1.96588 1.81888 1.93240 1.64269 1.75209 1.80568 1.93304 1.95331 1.90371 1.34785 0.90273 0.88738 0.88186 0.79161 0.89550 0.93865 0.95759 0.97589 0.93070 0.92733 0.90309 0.88636 0.88624 0.89739 0.89926 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 11.19 59.85 0.67 1.43 16 2 N -0.35 -4.72 4.01 -63.88 -0.26 -4.98 16 3 N -0.27 -3.76 12.58 30.62 0.39 -3.38 16 4 C 0.05 0.72 11.24 -17.37 -0.20 0.53 16 5 C -0.14 -2.14 4.50 -105.06 -0.47 -2.62 16 6 C 0.11 1.82 4.69 -4.98 -0.02 1.79 16 7 N -0.53 -10.74 4.69 -237.52 -1.11 -11.85 16 8 C 0.19 4.79 4.53 -4.98 -0.02 4.76 16 9 C -0.50 -13.54 8.51 -34.45 -0.29 -13.83 16 10 H 0.06 1.64 7.37 -52.48 -0.39 1.25 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 13 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.10 1.84 5.26 -3.82 -0.02 1.82 16 18 C -0.17 -2.90 3.98 -90.62 -0.36 -3.26 16 19 C -0.16 -2.79 10.18 -26.69 -0.27 -3.06 16 20 C -0.19 -2.82 10.25 -26.70 -0.27 -3.09 16 21 C -0.01 -0.12 6.39 -82.27 -0.53 -0.65 16 22 C 0.55 8.31 3.38 36.01 0.12 8.43 16 23 F -0.19 -2.37 14.54 2.25 0.03 -2.34 16 24 F -0.15 -2.54 14.76 2.25 0.03 -2.51 16 25 F -0.16 -2.66 17.30 2.25 0.04 -2.62 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.83 5.55 -51.93 -0.29 0.54 16 29 H 0.19 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.09 1.55 6.04 -51.93 -0.31 1.24 16 31 H 0.04 0.71 6.25 -51.93 -0.32 0.38 16 32 H 0.02 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.01 0.16 6.62 -51.93 -0.34 -0.18 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.05 0.95 6.45 -51.93 -0.33 0.61 16 36 H 0.08 1.64 6.88 -51.93 -0.36 1.29 16 37 H 0.10 1.66 6.24 -51.93 -0.32 1.34 16 38 H 0.10 1.80 8.03 -51.93 -0.42 1.39 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -30.14 346.01 -6.89 -37.03 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.17 Total: 0.54 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.76 Total: -6.23 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.25 Total: -45.65 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.10 Total: -7.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.14 -6.89 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151630864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.031 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds