Wall clock time and date at job start Tue Mar 31 2020 11:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40084 * 126.03474 * 2 1 4 4 C 1.30835 * 108.20293 * 180.23197 * 3 2 1 5 5 C 1.39870 * 108.20427 * 359.78717 * 4 3 2 6 6 C 1.50696 * 126.04414 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47192 * 102.06286 * 6 5 4 8 8 C 1.46903 * 111.00261 * 172.15516 * 7 6 5 9 9 C 1.50692 * 109.47397 * 192.15741 * 8 7 6 10 10 H 1.08007 * 120.00155 * 3.28913 * 9 8 7 11 11 C 1.37874 * 120.00167 * 183.29061 * 9 8 7 12 12 N 1.31512 * 120.00172 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00152 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46784 * 60.00105 * 13 11 9 15 15 H 1.48497 * 109.47138 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47377 * 300.00343 * 13 11 9 17 17 C 1.46899 * 111.00308 * 296.11237 * 7 6 5 18 18 C 1.53008 * 109.46831 * 293.49527 * 17 7 6 19 19 C 1.53001 * 117.49740 * 242.84718 * 18 17 7 20 20 C 1.52996 * 117.49665 * 174.18996 * 18 17 7 21 21 C 1.34946 * 126.03892 * 179.85175 * 2 1 3 22 22 C 1.50701 * 126.12264 * 0.03431 * 21 2 1 23 23 F 1.39899 * 109.47467 * 29.72225 * 22 21 2 24 24 F 1.39899 * 109.46878 * 149.72249 * 22 21 2 25 25 F 1.39900 * 109.47256 * 269.71931 * 22 21 2 26 26 H 1.09002 * 109.47006 * 270.15116 * 1 2 3 27 27 H 1.08998 * 109.46999 * 30.14539 * 1 2 3 28 28 H 1.08999 * 109.46754 * 150.14712 * 1 2 3 29 29 H 1.08001 * 125.90342 * 179.81630 * 4 3 2 30 30 H 1.08996 * 109.47711 * 222.06408 * 6 5 4 31 31 H 1.09003 * 109.47266 * 342.06821 * 6 5 4 32 32 H 1.09000 * 109.46749 * 312.15642 * 8 7 6 33 33 H 1.08999 * 109.47164 * 72.15129 * 8 7 6 34 34 H 0.96999 * 120.00468 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.47361 * 53.49355 * 17 7 6 36 36 H 1.08994 * 109.47391 * 173.49922 * 17 7 6 37 37 H 1.08994 * 115.54803 * 28.51879 * 18 17 7 38 38 H 1.09003 * 117.49702 * 0.02562 * 19 18 17 39 39 H 1.08993 * 117.49776 * 145.02170 * 19 18 17 40 40 H 1.09003 * 117.49420 * 214.98014 * 20 18 17 41 41 H 1.09003 * 117.50456 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0050 5 6 3.5437 -0.6665 -0.0035 6 6 4.7679 -1.5453 -0.0084 7 7 5.0035 -2.0644 1.3455 8 6 6.0747 -3.0698 1.3449 9 6 6.0886 -3.7898 2.6686 10 1 5.3402 -3.5642 3.4140 11 6 7.0567 -4.7365 2.9283 12 7 7.9682 -5.0109 2.0209 13 14 7.0743 -5.6286 4.5695 14 1 5.7965 -6.3641 4.7468 15 1 8.2061 -6.5895 4.5984 16 1 7.2339 -4.6418 5.6676 17 6 5.3056 -0.9740 2.2823 18 6 6.6459 -0.3374 1.9089 19 6 7.7799 -0.4268 2.9322 20 6 7.0760 0.9096 2.6840 21 6 2.2590 -1.0912 0.0028 22 6 1.7973 -2.5257 0.0058 23 9 0.5644 -2.6203 -0.6485 24 9 2.7392 -3.3200 -0.6570 25 9 1.6600 -2.9687 1.3257 26 1 -0.3633 0.0027 1.0277 27 1 -0.3633 0.8887 -0.5161 28 1 -0.3633 -0.8913 -0.5116 29 1 4.4054 1.3710 -0.0092 30 1 4.6150 -2.3777 -0.6951 31 1 5.6318 -0.9632 -0.3297 32 1 5.8993 -3.7869 0.5430 33 1 7.0347 -2.5778 1.1887 34 1 8.6491 -5.6772 2.2034 35 1 4.5188 -0.2214 2.2298 36 1 5.3618 -1.3708 3.2959 37 1 6.9145 -0.3919 0.8540 38 1 7.5712 -0.9394 3.8712 39 1 8.7945 -0.5397 2.5504 40 1 7.6279 1.6754 2.1389 41 1 6.4040 1.2769 3.4596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151630864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:55 Heat of formation + Delta-G solvation = -48.053869 kcal Electronic energy + Delta-G solvation = -28309.941210 eV Core-core repulsion = 24005.540634 eV Total energy + Delta-G solvation = -4304.400576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.29483 -48.87229 -48.71104 -42.53937 -39.46544 -36.62318 -34.87249 -34.20166 -32.63720 -29.80013 -28.72810 -27.29409 -26.84979 -25.06234 -23.17491 -23.08251 -22.34602 -21.90353 -20.62243 -19.62724 -19.40319 -18.67867 -18.22892 -17.09104 -16.95903 -16.65162 -16.42112 -15.91938 -15.76081 -15.65811 -15.47844 -15.25141 -15.05732 -14.98596 -14.87483 -14.82284 -14.16992 -13.96111 -13.76053 -13.65505 -13.22369 -13.12795 -12.92791 -12.71715 -12.58837 -12.51499 -12.34910 -12.20595 -12.02566 -11.66476 -11.30866 -11.04976 -10.73853 -10.59839 -10.47902 -9.66867 -8.82712 -8.09999 -6.16618 0.27002 1.00589 1.42220 1.44134 1.48749 1.52049 1.65496 2.45510 2.52936 2.97181 3.04282 3.23330 3.24535 3.39815 3.53878 3.95121 4.10676 4.13297 4.16686 4.24134 4.31079 4.33552 4.53975 4.60658 4.61444 4.79162 4.85315 4.87236 4.94050 5.09241 5.14824 5.33171 5.37112 5.39605 5.45967 5.52094 5.61713 5.74723 6.18606 6.36112 6.47106 6.74011 6.98229 7.51050 8.99896 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.005243 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.981857 B = 5338.703078 C = 6689.399968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.348 5.348 3 N -0.272 5.272 4 C 0.059 3.941 5 C -0.156 4.156 6 C 0.111 3.889 7 N -0.534 5.534 8 C 0.213 3.787 9 C -0.506 4.506 10 H 0.052 0.948 11 C 0.010 3.990 12 N -0.930 5.930 13 Si 0.952 3.048 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.107 3.893 18 C -0.179 4.179 19 C -0.184 4.184 20 C -0.150 4.150 21 C -0.014 4.014 22 C 0.547 3.453 23 F -0.170 7.170 24 F -0.165 7.165 25 F -0.170 7.170 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.217 0.783 30 H 0.073 0.927 31 H 0.054 0.946 32 H -0.006 1.006 33 H -0.012 1.012 34 H 0.261 0.739 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.745 12.806 -4.957 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.132 5.132 3 N -0.095 5.095 4 C -0.125 4.125 5 C -0.169 4.169 6 C -0.017 4.017 7 N -0.257 5.257 8 C 0.087 3.913 9 C -0.544 4.544 10 H 0.070 0.930 11 C -0.188 4.188 12 N -0.572 5.572 13 Si 0.778 3.222 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.195 1.195 17 C -0.021 4.021 18 C -0.199 4.199 19 C -0.221 4.221 20 C -0.188 4.188 21 C -0.143 4.143 22 C 0.490 3.510 23 F -0.151 7.151 24 F -0.146 7.146 25 F -0.151 7.151 26 H 0.111 0.889 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.233 0.767 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.012 0.988 33 H 0.006 0.994 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.028 13.418 -4.831 20.005 hybrid contribution 1.587 -1.611 0.496 2.315 sum -12.441 11.808 -4.336 17.692 Atomic orbital electron populations 1.22623 0.71337 1.07176 1.05527 1.48609 1.07905 1.01404 1.55241 1.77380 1.02031 1.07122 1.22927 1.24195 0.95922 0.93319 0.99107 1.19911 0.92684 0.94838 1.09441 1.20574 0.92932 0.96365 0.91843 1.62268 1.44796 1.12595 1.06037 1.19306 0.87424 0.88949 0.95592 1.21290 1.11594 1.20449 1.01114 0.92953 1.25655 0.95270 0.97863 0.99988 1.70053 1.16939 1.34341 1.35822 0.85704 0.77450 0.78515 0.80546 1.19945 1.21043 1.19548 1.21506 0.93017 0.91453 0.96113 1.22821 0.97374 1.02562 0.97150 1.22795 0.96982 1.01723 1.00634 1.22987 1.02873 0.90216 1.02710 1.20481 0.93430 0.87993 1.12397 1.17197 0.74567 0.85001 0.74198 1.93113 1.43995 1.96556 1.81450 1.93216 1.64940 1.75677 1.80752 1.93275 1.95428 1.90587 1.35820 0.88936 0.86531 0.87477 0.76670 0.90874 0.92789 0.98798 0.99401 0.93052 0.90893 0.93046 0.88813 0.90709 0.90181 0.87229 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 11.19 127.77 1.43 2.55 16 2 N -0.35 -8.52 4.01 -356.02 -1.43 -9.95 16 3 N -0.27 -6.94 12.58 -57.02 -0.72 -7.65 16 4 C 0.06 1.46 11.24 85.24 0.96 2.42 16 5 C -0.16 -4.61 4.50 -20.15 -0.09 -4.71 16 6 C 0.11 3.86 4.69 85.56 0.40 4.26 16 7 N -0.53 -22.19 4.69 -905.37 -4.25 -26.44 16 8 C 0.21 10.97 4.53 85.55 0.39 11.35 16 9 C -0.51 -28.32 8.51 25.60 0.22 -28.10 16 10 H 0.05 2.95 7.37 -2.91 -0.02 2.93 16 11 C 0.01 0.57 5.46 84.65 0.46 1.04 16 12 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 13 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 C 0.11 3.98 5.26 86.31 0.45 4.44 16 18 C -0.18 -6.01 3.98 -10.79 -0.04 -6.06 16 19 C -0.18 -6.44 10.18 30.62 0.31 -6.13 16 20 C -0.15 -3.97 10.25 30.62 0.31 -3.66 16 21 C -0.01 -0.40 6.39 41.41 0.26 -0.14 16 22 C 0.55 16.38 3.38 71.24 0.24 16.62 16 23 F -0.17 -4.13 14.54 44.97 0.65 -3.47 16 24 F -0.16 -5.61 14.76 44.97 0.66 -4.94 16 25 F -0.17 -5.75 17.30 44.97 0.78 -4.97 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.11 1.51 5.55 -2.39 -0.01 1.49 16 29 H 0.22 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.07 2.71 6.04 -2.39 -0.01 2.69 16 31 H 0.05 1.74 6.25 -2.39 -0.01 1.73 16 32 H -0.01 -0.34 7.92 -2.39 -0.02 -0.36 16 33 H -0.01 -0.64 6.62 -2.39 -0.02 -0.65 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.07 2.42 6.45 -2.39 -0.02 2.41 16 36 H 0.05 2.18 6.88 -2.39 -0.02 2.16 16 37 H 0.09 3.19 6.24 -2.39 -0.01 3.18 16 38 H 0.07 2.90 8.03 -2.39 -0.02 2.88 16 39 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -65.73 346.01 4.38 -61.34 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.06 Total: 10.56 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.31 Total: -6.10 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.11 Total: -99.24 kcal Atomic # 9 Polarization: -15.48 SS G_CDS: 2.10 Total: -13.39 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.73 4.38 -61.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151630864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.288 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds