Wall clock time and date at job start Tue Mar 31 2020 11:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00158 * 2 1 4 4 O 1.20824 * 120.00286 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00080 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47360 * 185.90677 * 5 3 2 7 7 N 1.46906 * 109.54423 * 55.70211 * 6 5 3 8 8 C 1.46904 * 110.99563 * 54.39618 * 7 6 5 9 9 C 1.52999 * 109.46787 * 179.49585 * 8 7 6 10 10 C 1.52991 * 109.47082 * 180.02562 * 9 8 7 11 11 S 1.80997 * 109.47417 * 179.97438 * 10 9 8 12 12 C 1.76197 * 100.00421 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99744 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00503 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99815 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00513 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47167 * 59.99959 * 16 14 12 18 18 H 1.48503 * 109.47355 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47523 * 300.00163 * 16 14 12 20 20 C 1.53180 * 109.54159 * 295.44042 * 6 5 3 21 21 C 1.53097 * 109.16266 * 183.15324 * 20 6 5 22 22 O 1.42904 * 109.41629 * 57.60517 * 21 20 6 23 23 C 1.42902 * 114.09533 * 298.84000 * 22 21 20 24 24 C 1.53099 * 109.41416 * 61.16450 * 23 22 21 25 25 H 1.09006 * 109.47362 * 300.00554 * 1 2 3 26 26 H 1.09004 * 109.47114 * 59.99881 * 1 2 3 27 27 H 1.08995 * 109.47358 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47324 * 65.90522 * 5 3 2 29 29 H 1.08998 * 109.46979 * 305.90562 * 5 3 2 30 30 H 1.00895 * 110.99538 * 290.44855 * 7 6 5 31 31 H 1.08994 * 109.47313 * 299.49885 * 8 7 6 32 32 H 1.09004 * 109.47016 * 59.49762 * 8 7 6 33 33 H 1.09004 * 109.47422 * 300.00201 * 9 8 7 34 34 H 1.09004 * 109.47197 * 60.00288 * 9 8 7 35 35 H 1.09004 * 109.47295 * 299.99825 * 10 9 8 36 36 H 1.08998 * 109.47752 * 59.99825 * 10 9 8 37 37 H 0.96999 * 120.00297 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.51867 * 303.05230 * 20 6 5 39 39 H 1.08993 * 109.52721 * 63.24194 * 20 6 5 40 40 H 1.08999 * 109.47767 * 297.62384 * 21 20 6 41 41 H 1.09000 * 109.49049 * 177.59596 * 21 20 6 42 42 H 1.08997 * 109.48664 * 301.17655 * 23 22 21 43 43 H 1.09004 * 109.48638 * 181.14637 * 23 22 21 44 44 H 1.09000 * 109.52255 * 182.48718 * 24 23 22 45 45 H 1.08992 * 109.57449 * 62.32334 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0006 2.7343 0.1480 7 7 3.3988 3.3052 1.3604 8 6 3.7134 2.4874 2.5395 9 6 3.0815 3.1190 3.7815 10 6 3.4097 2.2676 5.0096 11 16 2.6629 3.0151 6.4791 12 6 3.1839 1.8635 7.7067 13 1 3.7846 1.0107 7.4268 14 6 2.8224 2.0522 9.0334 15 7 2.0907 3.0919 9.3746 16 14 3.3741 0.8310 10.3347 17 1 4.8579 0.7825 10.3706 18 1 2.8610 1.2561 11.6618 19 1 2.8427 -0.5162 10.0063 20 6 3.5440 3.5321 -1.0773 21 6 4.0506 4.9718 -0.9571 22 8 5.4743 4.9657 -0.8340 23 6 5.9572 4.2745 0.3199 24 6 5.5273 2.8068 0.2508 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9507 0.8751 -0.9389 29 1 3.9610 0.6918 0.8315 30 1 2.4017 3.4147 1.2519 31 1 3.3159 1.4820 2.4009 32 1 4.7946 2.4360 2.6680 33 1 3.4791 4.1244 3.9201 34 1 2.0003 3.1703 3.6530 35 1 3.0124 1.2620 4.8713 36 1 4.4909 2.2166 5.1380 37 1 1.8377 3.2236 10.3017 38 1 3.9508 3.0771 -1.9804 39 1 2.4552 3.5320 -1.1270 40 1 3.6115 5.4392 -0.0757 41 1 3.7650 5.5333 -1.8466 42 1 5.5431 4.7328 1.2180 43 1 7.0452 4.3335 0.3502 44 1 5.8566 2.2880 1.1511 45 1 5.9741 2.3362 -0.6249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154477129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:44 Heat of formation + Delta-G solvation = -143.481114 kcal Electronic energy + Delta-G solvation = -25359.332909 eV Core-core repulsion = 21695.802237 eV Total energy + Delta-G solvation = -3663.530671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32470 -39.64232 -37.24953 -36.27475 -33.99217 -32.42715 -31.24368 -30.43247 -30.09727 -27.55365 -25.77300 -24.97719 -23.93019 -23.28657 -21.24413 -20.98884 -19.33817 -17.91667 -17.45723 -16.94989 -16.83471 -16.23174 -15.97411 -15.79895 -15.20046 -14.96037 -14.80393 -14.70060 -14.09332 -14.01224 -13.61861 -13.28693 -12.96975 -12.77758 -12.57340 -12.50023 -12.33675 -12.26459 -11.94313 -11.57945 -11.47823 -11.32146 -11.07650 -11.05666 -11.03434 -10.83038 -10.63572 -10.47283 -10.35309 -10.20732 -9.62099 -9.53054 -9.04936 -8.44249 -8.29570 -6.52124 -6.22176 -3.92524 1.85969 2.40109 3.21290 3.22922 3.27661 3.54654 3.87126 4.02794 4.22667 4.25863 4.37620 4.59367 4.76322 4.83153 4.91410 4.93710 5.02702 5.08272 5.13598 5.21153 5.26687 5.31269 5.31416 5.34646 5.47536 5.54158 5.59282 5.64313 5.72607 5.77087 5.86602 5.90262 5.91807 6.01090 6.13278 6.19205 6.33074 6.59428 6.73637 7.01666 7.19432 7.31847 7.54085 7.60246 8.36543 9.23772 10.85956 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.003087 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.084980 B = 9069.206685 C =10266.426249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.502 6.502 5 C -0.150 4.150 6 C 0.130 3.870 7 N -0.678 5.678 8 C 0.057 3.943 9 C -0.094 4.094 10 C -0.111 4.111 11 S -0.131 6.131 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.153 4.153 21 C 0.070 3.930 22 O -0.388 6.388 23 C 0.070 3.930 24 C -0.141 4.141 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.358 0.642 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.268 0.732 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 -3.713 -23.712 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.390 6.390 5 C -0.189 4.189 6 C 0.038 3.962 7 N -0.314 5.314 8 C -0.074 4.074 9 C -0.133 4.133 10 C -0.261 4.261 11 S 0.097 5.903 12 C -0.666 4.666 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.505 5.505 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.191 4.191 21 C -0.007 4.007 22 O -0.307 6.307 23 C -0.007 4.007 24 C -0.179 4.179 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.182 0.818 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.285 -1.841 -23.462 23.645 hybrid contribution 0.028 -3.022 0.843 3.138 sum 2.313 -4.864 -22.619 23.251 Atomic orbital electron populations 1.23309 0.75911 1.03882 1.02809 1.86510 1.23837 1.33428 1.83810 1.23769 0.92046 0.81456 0.71886 1.90556 1.67258 1.35833 1.45325 1.22340 0.87990 1.02285 1.06328 1.20780 0.94974 0.88703 0.91778 1.60676 1.19585 1.50048 1.01095 1.22133 1.00971 0.94167 0.90097 1.21216 1.00632 0.99825 0.91605 1.23213 1.02781 1.01265 0.98804 1.84658 1.70000 1.37790 0.97834 1.22651 1.38690 1.11654 0.93588 0.91074 1.25008 0.94797 0.96052 0.97890 1.70015 1.34776 1.27260 1.18473 0.86232 0.79047 0.80603 0.79684 1.19921 1.20804 1.19981 1.22454 1.03325 0.97124 0.96189 1.22444 0.81090 0.95219 1.01927 1.87864 1.21473 1.75752 1.45644 1.22441 0.98633 0.90400 0.89228 1.22233 0.93509 0.99250 1.02893 0.91430 0.91849 0.88046 0.87238 0.87184 0.81837 0.95800 0.90739 0.90654 0.91995 0.92536 0.92118 0.92254 0.91320 0.88862 0.91758 0.89685 0.91402 0.89515 0.90382 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.76 10.56 -39.25 -0.41 -4.17 16 3 C 0.46 5.00 7.12 36.00 0.26 5.26 16 4 O -0.50 -6.24 11.44 -18.75 -0.21 -6.46 16 5 C -0.15 -1.31 4.30 -27.88 -0.12 -1.43 16 6 C 0.13 1.26 0.28 -131.41 -0.04 1.22 16 7 N -0.68 -8.02 4.74 -99.77 -0.47 -8.49 16 8 C 0.06 0.73 4.82 -3.82 -0.02 0.72 16 9 C -0.09 -1.55 5.48 -26.74 -0.15 -1.70 16 10 C -0.11 -2.25 5.67 37.15 0.21 -2.04 16 11 S -0.13 -3.47 21.44 -107.50 -2.30 -5.77 16 12 C -0.52 -14.94 9.50 30.94 0.29 -14.65 16 13 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 14 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 15 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 16 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.15 -1.47 4.72 -26.59 -0.13 -1.59 16 21 C 0.07 0.72 6.68 37.21 0.25 0.97 16 22 O -0.39 -4.51 10.77 -35.23 -0.38 -4.89 16 23 C 0.07 0.71 6.68 37.21 0.25 0.96 16 24 C -0.14 -1.26 4.78 -26.59 -0.13 -1.39 16 25 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 0.94 6.61 -51.93 -0.34 0.60 16 30 H 0.36 4.70 6.13 -39.29 -0.24 4.46 16 31 H 0.02 0.31 6.08 -51.93 -0.32 -0.01 16 32 H 0.07 0.92 6.38 -51.93 -0.33 0.59 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.14 8.14 -51.91 -0.42 0.71 16 36 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.99 5.79 -51.93 -0.30 0.69 16 40 H 0.06 0.73 7.75 -51.93 -0.40 0.32 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.68 6.41 -51.93 -0.33 0.35 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -32.38 365.83 -8.19 -40.58 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.29 Total: 2.93 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 1.66 Total: -10.38 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.26 Total: -33.92 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.01 Total: -15.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.30 Total: -5.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.38 -8.19 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154477129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.904 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds