Wall clock time and date at job start Tue Mar 31 2020 11:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00158 * 2 1 4 4 O 1.20824 * 120.00286 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00080 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47360 * 185.90677 * 5 3 2 7 7 N 1.46906 * 109.54423 * 55.70211 * 6 5 3 8 8 C 1.46904 * 110.99563 * 54.39618 * 7 6 5 9 9 C 1.52999 * 109.46787 * 179.49585 * 8 7 6 10 10 C 1.52991 * 109.47082 * 180.02562 * 9 8 7 11 11 S 1.80997 * 109.47417 * 179.97438 * 10 9 8 12 12 C 1.76197 * 100.00421 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99744 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00503 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99815 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00513 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47167 * 59.99959 * 16 14 12 18 18 H 1.48503 * 109.47355 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47523 * 300.00163 * 16 14 12 20 20 C 1.53180 * 109.54159 * 295.44042 * 6 5 3 21 21 C 1.53097 * 109.16266 * 183.15324 * 20 6 5 22 22 O 1.42904 * 109.41629 * 57.60517 * 21 20 6 23 23 C 1.42902 * 114.09533 * 298.84000 * 22 21 20 24 24 C 1.53099 * 109.41416 * 61.16450 * 23 22 21 25 25 H 1.09006 * 109.47362 * 300.00554 * 1 2 3 26 26 H 1.09004 * 109.47114 * 59.99881 * 1 2 3 27 27 H 1.08995 * 109.47358 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47324 * 65.90522 * 5 3 2 29 29 H 1.08998 * 109.46979 * 305.90562 * 5 3 2 30 30 H 1.00895 * 110.99538 * 290.44855 * 7 6 5 31 31 H 1.08994 * 109.47313 * 299.49885 * 8 7 6 32 32 H 1.09004 * 109.47016 * 59.49762 * 8 7 6 33 33 H 1.09004 * 109.47422 * 300.00201 * 9 8 7 34 34 H 1.09004 * 109.47197 * 60.00288 * 9 8 7 35 35 H 1.09004 * 109.47295 * 299.99825 * 10 9 8 36 36 H 1.08998 * 109.47752 * 59.99825 * 10 9 8 37 37 H 0.96999 * 120.00297 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.51867 * 303.05230 * 20 6 5 39 39 H 1.08993 * 109.52721 * 63.24194 * 20 6 5 40 40 H 1.08999 * 109.47767 * 297.62384 * 21 20 6 41 41 H 1.09000 * 109.49049 * 177.59596 * 21 20 6 42 42 H 1.08997 * 109.48664 * 301.17655 * 23 22 21 43 43 H 1.09004 * 109.48638 * 181.14637 * 23 22 21 44 44 H 1.09000 * 109.52255 * 182.48718 * 24 23 22 45 45 H 1.08992 * 109.57449 * 62.32334 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0006 2.7343 0.1480 7 7 3.3988 3.3052 1.3604 8 6 3.7134 2.4874 2.5395 9 6 3.0815 3.1190 3.7815 10 6 3.4097 2.2676 5.0096 11 16 2.6629 3.0151 6.4791 12 6 3.1839 1.8635 7.7067 13 1 3.7846 1.0107 7.4268 14 6 2.8224 2.0522 9.0334 15 7 2.0907 3.0919 9.3746 16 14 3.3741 0.8310 10.3347 17 1 4.8579 0.7825 10.3706 18 1 2.8610 1.2561 11.6618 19 1 2.8427 -0.5162 10.0063 20 6 3.5440 3.5321 -1.0773 21 6 4.0506 4.9718 -0.9571 22 8 5.4743 4.9657 -0.8340 23 6 5.9572 4.2745 0.3199 24 6 5.5273 2.8068 0.2508 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9507 0.8751 -0.9389 29 1 3.9610 0.6918 0.8315 30 1 2.4017 3.4147 1.2519 31 1 3.3159 1.4820 2.4009 32 1 4.7946 2.4360 2.6680 33 1 3.4791 4.1244 3.9201 34 1 2.0003 3.1703 3.6530 35 1 3.0124 1.2620 4.8713 36 1 4.4909 2.2166 5.1380 37 1 1.8377 3.2236 10.3017 38 1 3.9508 3.0771 -1.9804 39 1 2.4552 3.5320 -1.1270 40 1 3.6115 5.4392 -0.0757 41 1 3.7650 5.5333 -1.8466 42 1 5.5431 4.7328 1.2180 43 1 7.0452 4.3335 0.3502 44 1 5.8566 2.2880 1.1511 45 1 5.9741 2.3362 -0.6249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154477129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:44 Heat of formation + Delta-G solvation = -164.251347 kcal Electronic energy + Delta-G solvation = -25360.233573 eV Core-core repulsion = 21695.802237 eV Total energy + Delta-G solvation = -3664.431336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12842 -40.44385 -38.09413 -37.19607 -35.15678 -34.60116 -32.02160 -31.53941 -30.84734 -28.24434 -27.84921 -26.27052 -24.71726 -24.21499 -22.36872 -21.94349 -20.16611 -19.53019 -18.70270 -17.75810 -17.62122 -17.09297 -16.90066 -16.86668 -16.72294 -16.32024 -16.11540 -15.63469 -15.51170 -14.92991 -14.75263 -14.41204 -14.12722 -13.77349 -13.71726 -13.48068 -13.20298 -13.06541 -13.03324 -12.94885 -12.92573 -12.76449 -12.51518 -12.32902 -12.20216 -11.89881 -11.82986 -11.76109 -11.38136 -11.17334 -11.13866 -11.00174 -10.45814 -10.32761 -9.35568 -8.68078 -8.37581 -6.14605 1.06868 1.30723 1.40572 1.47468 1.69633 1.73785 2.28066 2.96599 3.05771 3.10969 3.33172 3.49676 3.63497 3.84805 3.96120 4.01384 4.18416 4.23424 4.25417 4.27151 4.29487 4.36632 4.41705 4.47502 4.55930 4.59588 4.65858 4.73171 4.73831 4.82846 4.85783 4.89139 5.01073 5.11711 5.15043 5.17292 5.25752 5.33533 5.38528 5.40079 6.08676 6.17215 6.38380 6.39586 6.67744 7.04215 8.71699 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.003087 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.084980 B = 9069.206685 C =10266.426249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.460 3.540 4 O -0.525 6.525 5 C -0.146 4.146 6 C 0.129 3.871 7 N -0.683 5.683 8 C 0.070 3.930 9 C -0.083 4.083 10 C -0.084 4.084 11 S -0.202 6.202 12 C -0.539 4.539 13 H 0.074 0.926 14 C 0.015 3.985 15 N -0.909 5.909 16 Si 0.994 3.006 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.264 1.264 20 C -0.146 4.146 21 C 0.068 3.932 22 O -0.401 6.401 23 C 0.066 3.934 24 C -0.136 4.136 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.137 0.863 29 H 0.117 0.883 30 H 0.350 0.650 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.271 0.729 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -5.718 -24.792 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.305 3.695 4 O -0.414 6.414 5 C -0.185 4.185 6 C 0.037 3.963 7 N -0.318 5.318 8 C -0.060 4.060 9 C -0.122 4.122 10 C -0.234 4.234 11 S 0.027 5.973 12 C -0.687 4.687 13 H 0.092 0.908 14 C -0.190 4.190 15 N -0.545 5.545 16 Si 0.816 3.184 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.189 1.189 20 C -0.184 4.184 21 C -0.008 4.008 22 O -0.321 6.321 23 C -0.011 4.011 24 C -0.174 4.174 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.173 0.827 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.695 -3.853 -24.561 25.134 hybrid contribution -0.441 -2.350 1.077 2.623 sum 3.254 -6.203 -23.483 24.506 Atomic orbital electron populations 1.23497 0.74987 1.05500 1.02425 1.86506 1.24865 1.33310 1.83610 1.24207 0.92871 0.81212 0.71229 1.90557 1.67929 1.36515 1.46415 1.22372 0.86593 1.01476 1.08075 1.20861 0.95418 0.89377 0.90635 1.60645 1.19141 1.50309 1.01715 1.21926 1.01232 0.93996 0.88854 1.21092 1.00219 0.99029 0.91829 1.23120 1.02342 1.01270 0.96641 1.84719 1.71570 1.39561 1.01471 1.23013 1.39045 1.12016 0.94596 0.90794 1.26086 0.94526 0.98045 1.00323 1.70158 1.35907 1.29246 1.19179 0.85061 0.78989 0.77964 0.76379 1.18777 1.20031 1.18867 1.22381 1.02625 0.96638 0.96756 1.22479 0.80638 0.95947 1.01752 1.87848 1.21947 1.76213 1.46054 1.22520 0.99368 0.91092 0.88099 1.22223 0.92683 0.98373 1.04101 0.92738 0.91341 0.85496 0.84476 0.86501 0.82741 0.95261 0.89458 0.91533 0.93119 0.92232 0.91435 0.91972 0.89762 0.89937 0.93446 0.88496 0.93299 0.88141 0.89790 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.37 -7.09 10.56 -51.40 -0.54 -7.63 16 3 C 0.46 9.21 7.12 71.24 0.51 9.72 16 4 O -0.52 -12.77 11.44 21.97 0.25 -12.51 16 5 C -0.15 -2.16 4.30 29.85 0.13 -2.03 16 6 C 0.13 2.23 0.28 3.65 0.00 2.23 16 7 N -0.68 -15.53 4.74 -469.57 -2.23 -17.76 16 8 C 0.07 1.73 4.82 86.30 0.42 2.14 16 9 C -0.08 -2.72 5.48 30.59 0.17 -2.56 16 10 C -0.08 -3.39 5.67 71.98 0.41 -2.98 16 11 S -0.20 -10.93 21.44 -56.49 -1.21 -12.14 16 12 C -0.54 -31.35 9.50 67.95 0.65 -30.71 16 13 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 14 C 0.02 0.86 5.49 84.86 0.47 1.33 16 15 N -0.91 -55.44 13.22 21.65 0.29 -55.16 16 16 Si 0.99 43.93 29.55 68.60 2.03 45.96 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 C -0.15 -2.56 4.72 30.69 0.14 -2.42 16 21 C 0.07 1.35 6.68 72.01 0.48 1.83 16 22 O -0.40 -8.79 10.77 -148.98 -1.60 -10.39 16 23 C 0.07 1.24 6.68 72.02 0.48 1.72 16 24 C -0.14 -2.07 4.78 30.69 0.15 -1.92 16 25 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 26 H 0.07 0.97 8.13 -2.38 -0.02 0.95 16 27 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.14 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.12 1.62 6.61 -2.39 -0.02 1.61 16 30 H 0.35 9.13 6.13 -89.70 -0.55 8.58 16 31 H 0.03 0.70 6.08 -2.39 -0.01 0.68 16 32 H 0.09 1.95 6.38 -2.38 -0.02 1.93 16 33 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 36 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.67 5.79 -2.39 -0.01 1.66 16 40 H 0.05 1.08 7.75 -2.39 -0.02 1.06 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 43 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.20 6.41 -2.39 -0.02 1.18 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.74 365.83 2.60 -68.14 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.43 Total: 23.49 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.19 Total: -21.99 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.94 Total: -72.91 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.90 Total: -30.53 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -1.21 Total: -12.14 kcal Total: -70.74 2.60 -68.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154477129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.116 kcal (2) G-P(sol) polarization free energy of solvation -70.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds