Wall clock time and date at job start Tue Mar 31 2020 11:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34951 * 126.04134 * 2 1 4 4 C 1.35315 * 107.74532 * 180.14622 * 3 2 1 5 5 C 1.50703 * 126.03723 * 179.87398 * 4 3 2 6 6 C 1.53000 * 109.46912 * 269.71641 * 5 4 3 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00054 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47066 * 89.99681 * 10 9 7 12 12 H 1.08001 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00127 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00037 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00065 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47380 * 89.99525 * 15 13 11 17 17 H 1.48502 * 109.46914 * 210.00057 * 15 13 11 18 18 H 1.48507 * 109.46856 * 329.99469 * 15 13 11 19 19 C 1.46505 * 120.00050 * 359.97438 * 9 7 6 20 20 C 1.50703 * 109.46926 * 90.00049 * 19 9 7 21 21 C 1.34513 * 125.78612 * 89.71927 * 20 19 9 22 22 C 1.41389 * 106.83517 * 179.88436 * 21 20 19 23 23 C 1.34511 * 106.84296 * 0.37599 * 22 21 20 24 24 O 1.34300 * 125.78753 * 270.01963 * 20 19 9 25 25 C 1.39867 * 107.92332 * 359.61051 * 4 3 2 26 26 N 1.30838 * 108.19878 * 0.24058 * 25 4 3 27 27 H 1.09001 * 109.46948 * 270.26616 * 1 2 3 28 28 H 1.09004 * 109.46927 * 30.25864 * 1 2 3 29 29 H 1.08999 * 109.47380 * 150.25492 * 1 2 3 30 30 H 1.08000 * 126.12242 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47152 * 149.71413 * 5 4 3 32 32 H 1.09001 * 109.46980 * 29.71513 * 5 4 3 33 33 H 1.09001 * 109.47194 * 299.99742 * 6 5 4 34 34 H 1.08992 * 109.47399 * 59.99914 * 6 5 4 35 35 H 1.08998 * 109.47205 * 209.99546 * 10 9 7 36 36 H 1.08997 * 109.47416 * 330.00406 * 10 9 7 37 37 H 0.97001 * 119.99958 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.47101 * 210.00301 * 19 9 7 39 39 H 1.09003 * 109.46885 * 329.99908 * 19 9 7 40 40 H 1.07999 * 126.58344 * 0.02562 * 21 20 19 41 41 H 1.08001 * 126.57207 * 180.16235 * 22 21 20 42 42 H 1.07996 * 125.79104 * 179.75412 * 23 22 21 43 43 H 1.07995 * 125.90052 * 180.26506 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7681 1.5451 -0.0072 6 6 5.1825 1.8358 -1.4510 7 6 6.4073 2.7140 -1.4548 8 8 6.8997 3.0725 -0.4062 9 7 6.9547 3.1019 -2.6238 10 6 8.1448 3.9560 -2.6276 11 6 9.3814 3.0946 -2.6239 12 1 9.2898 2.0185 -2.6196 13 6 10.6296 3.6802 -2.6271 14 7 11.7087 2.9284 -2.6244 15 14 10.7880 5.5414 -2.6352 16 1 10.8306 6.0407 -1.2374 17 1 12.0378 5.9287 -3.3376 18 1 9.6215 6.1344 -3.3374 19 6 6.3594 2.6693 -3.8907 20 6 5.3269 3.6754 -4.3299 21 6 5.5567 4.7520 -5.1028 22 6 4.3166 5.4112 -5.2661 23 6 3.4048 4.7025 -4.5763 24 8 4.0225 3.6521 -4.0114 25 6 3.5347 -0.7322 0.0037 26 7 2.2891 -1.1328 0.0057 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8877 -0.5179 29 1 -0.3634 -0.8922 -0.5099 30 1 1.9282 2.1193 -0.0004 31 1 5.5821 1.0363 0.5092 32 1 4.5442 2.4824 0.5023 33 1 5.4064 0.8986 -1.9605 34 1 4.3686 2.3446 -1.9673 35 1 8.1404 4.5814 -3.5203 36 1 8.1406 4.5891 -1.7403 37 1 12.5868 3.3404 -2.6263 38 1 7.1375 2.5920 -4.6500 39 1 5.8853 1.6971 -3.7561 40 1 6.5058 5.0537 -5.5206 41 1 4.1367 6.3128 -5.8328 42 1 2.3543 4.9382 -4.4910 43 1 4.4053 -1.3711 0.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162486580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:09 Heat of formation + Delta-G solvation = 62.273002 kcal Electronic energy + Delta-G solvation = -26221.465958 eV Core-core repulsion = 22463.706254 eV Total energy + Delta-G solvation = -3757.759703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41191 -41.23505 -39.11783 -35.38607 -34.24725 -32.86030 -32.77222 -32.38952 -30.34583 -29.61751 -28.11411 -26.77316 -25.49422 -23.99266 -21.90528 -21.54023 -21.14366 -20.57650 -20.04847 -18.50312 -17.38306 -17.01234 -16.78244 -16.31301 -15.74726 -15.58231 -15.27492 -15.10803 -14.53598 -14.25674 -14.08663 -13.61873 -13.20152 -13.10486 -12.88450 -12.75967 -12.69909 -12.62488 -12.45609 -12.24659 -12.06020 -11.76699 -11.69728 -11.39003 -10.97177 -10.89391 -10.54165 -10.42789 -10.17889 -9.79455 -9.56040 -9.48317 -9.05348 -8.59003 -8.41759 -8.33417 -7.84181 -6.08761 -4.07715 1.80609 1.82246 2.43131 2.72088 2.77513 3.06109 3.29513 3.35553 3.37923 3.41879 3.91757 4.37907 4.39807 4.76412 4.83614 4.87591 4.97988 5.05414 5.12283 5.15061 5.15923 5.24954 5.33346 5.42446 5.45387 5.58703 5.73258 5.83640 5.90412 5.91595 5.95672 6.08668 6.21688 6.37304 6.45014 6.61680 6.64034 6.69620 6.93007 6.94897 7.21043 7.33327 7.60376 7.63249 8.17948 8.46317 8.92348 8.97846 9.51582 11.04440 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.003847 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.129056 B = 7276.919662 C = 8946.983655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.382 5.382 3 C 0.053 3.947 4 C -0.226 4.226 5 C -0.025 4.025 6 C -0.135 4.135 7 C 0.511 3.489 8 O -0.534 6.534 9 N -0.591 5.591 10 C 0.216 3.784 11 C -0.529 4.529 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.874 3.126 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.191 3.809 20 C -0.023 4.023 21 C -0.198 4.198 22 C -0.213 4.213 23 C -0.051 4.051 24 O -0.175 6.175 25 C 0.054 3.946 26 N -0.302 5.302 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.029 0.971 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.197 0.803 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.149 -0.845 -1.863 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.165 5.165 3 C -0.092 4.092 4 C -0.237 4.237 5 C -0.064 4.064 6 C -0.176 4.176 7 C 0.298 3.702 8 O -0.411 6.411 9 N -0.323 5.323 10 C 0.096 3.904 11 C -0.568 4.568 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.701 3.299 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C 0.066 3.934 20 C -0.074 4.074 21 C -0.218 4.218 22 C -0.233 4.233 23 C -0.118 4.118 24 O -0.071 6.071 25 C -0.132 4.132 26 N -0.124 5.124 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.189 0.811 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.214 0.786 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -23.749 -1.872 -1.102 23.849 hybrid contribution 0.710 2.025 -0.352 2.174 sum -23.040 0.153 -1.454 23.086 Atomic orbital electron populations 1.21797 0.74568 1.04299 1.03105 1.48419 1.06437 1.03967 1.57649 1.22335 0.90953 0.93225 1.02707 1.20197 0.94575 0.94034 1.14906 1.19603 0.93354 0.98217 0.95183 1.21750 0.96538 1.00138 0.99137 1.20552 0.84859 0.81056 0.83696 1.90667 1.63259 1.56289 1.30885 1.48000 1.29080 1.51334 1.03840 1.19677 0.82671 0.90600 0.97463 1.21324 0.88793 0.95188 1.51451 0.90559 1.24834 0.95644 0.97954 0.94435 1.69893 0.97851 1.35300 1.50427 0.86889 0.77820 0.86313 0.78922 1.19907 1.21086 1.19036 1.19906 0.91630 0.93162 0.88675 1.23352 0.82407 1.00976 1.00713 1.21700 0.99495 0.96603 1.04036 1.21819 0.93197 1.02901 1.05345 1.23924 0.98779 0.89110 1.00036 1.84014 1.20811 1.42703 1.59554 1.23874 0.95091 0.94792 0.99425 1.77324 1.01816 1.08280 1.24955 0.91020 0.89640 0.89476 0.81130 0.90229 0.90909 0.89348 0.89332 0.95276 0.94516 0.92551 0.86481 0.89328 0.83356 0.83810 0.78608 0.79940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.47 59.85 0.69 1.33 16 2 N -0.38 -4.13 4.01 -68.16 -0.27 -4.40 16 3 C 0.05 0.57 11.40 -17.22 -0.20 0.38 16 4 C -0.23 -2.80 5.35 -105.05 -0.56 -3.36 16 5 C -0.02 -0.34 4.99 -27.88 -0.14 -0.48 16 6 C -0.14 -1.99 4.23 -27.88 -0.12 -2.11 16 7 C 0.51 10.20 7.67 -10.98 -0.08 10.11 16 8 O -0.53 -12.87 15.56 5.56 0.09 -12.78 16 9 N -0.59 -11.89 2.44 -176.43 -0.43 -12.32 16 10 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 11 C -0.53 -14.86 9.94 -34.44 -0.34 -15.20 16 12 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 15 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 C 0.19 3.00 5.74 -5.19 -0.03 2.97 16 20 C -0.02 -0.34 6.85 -35.62 -0.24 -0.59 16 21 C -0.20 -2.88 10.81 -39.70 -0.43 -3.31 16 22 C -0.21 -2.63 10.91 -39.70 -0.43 -3.06 16 23 C -0.05 -0.57 12.09 29.41 0.36 -0.22 16 24 O -0.17 -2.40 9.54 5.71 0.05 -2.34 16 25 C 0.05 0.68 11.96 -17.37 -0.21 0.47 16 26 N -0.30 -3.99 12.58 30.62 0.39 -3.60 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 34 H 0.09 1.21 6.91 -51.93 -0.36 0.85 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.12 1.81 8.07 -51.93 -0.42 1.39 16 39 H 0.09 1.18 6.44 -51.93 -0.33 0.84 16 40 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -36.45 369.52 -6.40 -42.86 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.04 Total: 2.71 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.86 Total: -5.87 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.45 Total: -46.87 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.14 Total: -15.13 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.45 -6.40 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162486580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.131 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds