Wall clock time and date at job start Tue Mar 31 2020 11:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34951 * 126.04134 * 2 1 4 4 C 1.35315 * 107.74532 * 180.14622 * 3 2 1 5 5 C 1.50703 * 126.03723 * 179.87398 * 4 3 2 6 6 C 1.53000 * 109.46912 * 269.71641 * 5 4 3 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00054 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47066 * 89.99681 * 10 9 7 12 12 H 1.08001 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00127 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00037 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00065 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47380 * 89.99525 * 15 13 11 17 17 H 1.48502 * 109.46914 * 210.00057 * 15 13 11 18 18 H 1.48507 * 109.46856 * 329.99469 * 15 13 11 19 19 C 1.46505 * 120.00050 * 359.97438 * 9 7 6 20 20 C 1.50703 * 109.46926 * 90.00049 * 19 9 7 21 21 C 1.34513 * 125.78612 * 89.71927 * 20 19 9 22 22 C 1.41389 * 106.83517 * 179.88436 * 21 20 19 23 23 C 1.34511 * 106.84296 * 0.37599 * 22 21 20 24 24 O 1.34300 * 125.78753 * 270.01963 * 20 19 9 25 25 C 1.39867 * 107.92332 * 359.61051 * 4 3 2 26 26 N 1.30838 * 108.19878 * 0.24058 * 25 4 3 27 27 H 1.09001 * 109.46948 * 270.26616 * 1 2 3 28 28 H 1.09004 * 109.46927 * 30.25864 * 1 2 3 29 29 H 1.08999 * 109.47380 * 150.25492 * 1 2 3 30 30 H 1.08000 * 126.12242 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47152 * 149.71413 * 5 4 3 32 32 H 1.09001 * 109.46980 * 29.71513 * 5 4 3 33 33 H 1.09001 * 109.47194 * 299.99742 * 6 5 4 34 34 H 1.08992 * 109.47399 * 59.99914 * 6 5 4 35 35 H 1.08998 * 109.47205 * 209.99546 * 10 9 7 36 36 H 1.08997 * 109.47416 * 330.00406 * 10 9 7 37 37 H 0.97001 * 119.99958 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.47101 * 210.00301 * 19 9 7 39 39 H 1.09003 * 109.46885 * 329.99908 * 19 9 7 40 40 H 1.07999 * 126.58344 * 0.02562 * 21 20 19 41 41 H 1.08001 * 126.57207 * 180.16235 * 22 21 20 42 42 H 1.07996 * 125.79104 * 179.75412 * 23 22 21 43 43 H 1.07995 * 125.90052 * 180.26506 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7681 1.5451 -0.0072 6 6 5.1825 1.8358 -1.4510 7 6 6.4073 2.7140 -1.4548 8 8 6.8997 3.0725 -0.4062 9 7 6.9547 3.1019 -2.6238 10 6 8.1448 3.9560 -2.6276 11 6 9.3814 3.0946 -2.6239 12 1 9.2898 2.0185 -2.6196 13 6 10.6296 3.6802 -2.6271 14 7 11.7087 2.9284 -2.6244 15 14 10.7880 5.5414 -2.6352 16 1 10.8306 6.0407 -1.2374 17 1 12.0378 5.9287 -3.3376 18 1 9.6215 6.1344 -3.3374 19 6 6.3594 2.6693 -3.8907 20 6 5.3269 3.6754 -4.3299 21 6 5.5567 4.7520 -5.1028 22 6 4.3166 5.4112 -5.2661 23 6 3.4048 4.7025 -4.5763 24 8 4.0225 3.6521 -4.0114 25 6 3.5347 -0.7322 0.0037 26 7 2.2891 -1.1328 0.0057 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8877 -0.5179 29 1 -0.3634 -0.8922 -0.5099 30 1 1.9282 2.1193 -0.0004 31 1 5.5821 1.0363 0.5092 32 1 4.5442 2.4824 0.5023 33 1 5.4064 0.8986 -1.9605 34 1 4.3686 2.3446 -1.9673 35 1 8.1404 4.5814 -3.5203 36 1 8.1406 4.5891 -1.7403 37 1 12.5868 3.3404 -2.6263 38 1 7.1375 2.5920 -4.6500 39 1 5.8853 1.6971 -3.7561 40 1 6.5058 5.0537 -5.5206 41 1 4.1367 6.3128 -5.8328 42 1 2.3543 4.9382 -4.4910 43 1 4.4053 -1.3711 0.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162486580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:08 Heat of formation + Delta-G solvation = 38.612351 kcal Electronic energy + Delta-G solvation = -26222.491960 eV Core-core repulsion = 22463.706254 eV Total energy + Delta-G solvation = -3758.785706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.41275 -42.09730 -40.68926 -36.97850 -35.31215 -34.74808 -33.82711 -33.44870 -31.75183 -30.71973 -29.59697 -27.67578 -26.74707 -25.37549 -23.54837 -22.57465 -21.95852 -21.65059 -20.98524 -19.94471 -19.16382 -18.35083 -17.98366 -17.43070 -17.21244 -16.67152 -16.46414 -16.25700 -15.96788 -15.44955 -15.21399 -14.91621 -14.62385 -14.22680 -14.08505 -13.85483 -13.71645 -13.66190 -13.53590 -13.49803 -13.45244 -13.14613 -12.86302 -12.85642 -12.57106 -12.43162 -12.09671 -11.97466 -11.73203 -11.42327 -10.81447 -10.79790 -10.66627 -10.31669 -9.62534 -9.35299 -9.25337 -8.31828 -6.36419 0.78550 0.98413 1.33304 1.37109 1.45176 1.70954 1.74268 1.77623 1.83691 2.16753 2.32015 2.46604 3.02501 3.61487 3.77409 3.86752 4.02825 4.08557 4.19520 4.25637 4.27983 4.38426 4.40419 4.48389 4.57007 4.63278 4.72536 4.74354 4.78391 4.86224 4.92590 4.97395 5.00007 5.08207 5.24516 5.29023 5.38336 5.46243 5.55172 5.67107 5.72603 6.19512 6.24641 6.26925 6.62102 6.65991 6.76559 7.23497 7.40404 8.84809 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.003847 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.129056 B = 7276.919662 C = 8946.983655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.066 3.934 4 C -0.246 4.246 5 C -0.013 4.013 6 C -0.117 4.117 7 C 0.501 3.499 8 O -0.586 6.586 9 N -0.597 5.597 10 C 0.228 3.772 11 C -0.533 4.533 12 H 0.035 0.965 13 C 0.015 3.985 14 N -0.943 5.943 15 Si 0.942 3.058 16 H -0.277 1.277 17 H -0.275 1.275 18 H -0.240 1.240 19 C 0.190 3.810 20 C -0.043 4.043 21 C -0.210 4.210 22 C -0.230 4.230 23 C -0.033 4.033 24 O -0.181 6.181 25 C 0.043 3.957 26 N -0.333 5.333 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.204 0.796 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.268 0.732 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.167 0.833 42 H 0.242 0.758 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.669 0.922 -2.881 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.163 5.163 3 C -0.081 4.081 4 C -0.258 4.258 5 C -0.053 4.053 6 C -0.157 4.157 7 C 0.291 3.709 8 O -0.466 6.466 9 N -0.328 5.328 10 C 0.106 3.894 11 C -0.572 4.572 12 H 0.053 0.947 13 C -0.184 4.184 14 N -0.583 5.583 15 Si 0.765 3.235 16 H -0.203 1.203 17 H -0.200 1.200 18 H -0.163 1.163 19 C 0.067 3.933 20 C -0.094 4.094 21 C -0.231 4.231 22 C -0.248 4.248 23 C -0.100 4.100 24 O -0.077 6.077 25 C -0.142 4.142 26 N -0.155 5.155 27 H 0.103 0.897 28 H 0.134 0.866 29 H 0.108 0.892 30 H 0.220 0.780 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.162 0.838 41 H 0.184 0.816 42 H 0.258 0.742 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -27.323 -0.138 -2.163 27.409 hybrid contribution 1.685 1.421 -0.051 2.205 sum -25.638 1.283 -2.214 25.766 Atomic orbital electron populations 1.22187 0.71994 1.05959 1.04509 1.48802 1.07913 1.03308 1.56245 1.22779 0.90307 0.94500 1.00484 1.20044 0.94696 0.93709 1.17341 1.19400 0.93593 0.98062 0.94206 1.21697 0.94236 0.99474 1.00252 1.21521 0.85810 0.80747 0.82778 1.90632 1.65059 1.58255 1.32644 1.48059 1.28111 1.50764 1.05835 1.19285 0.82754 0.90384 0.96979 1.21543 0.90901 0.93844 1.50885 0.94662 1.25766 0.95163 1.03447 0.93978 1.70040 0.98580 1.37738 1.51966 0.85805 0.79034 0.79751 0.78940 1.20307 1.19999 1.16335 1.19999 0.92072 0.94724 0.86517 1.22928 0.83014 1.01284 1.02214 1.21930 1.00480 0.96807 1.03845 1.22129 0.92338 1.04022 1.06351 1.24829 1.00329 0.87211 0.97677 1.83995 1.20127 1.43695 1.59863 1.24081 0.95443 0.95232 0.99465 1.77273 1.02244 1.09866 1.26162 0.89738 0.86648 0.89212 0.77972 0.92302 0.91423 0.87982 0.87354 0.93624 0.96551 0.92294 0.86895 0.86960 0.83846 0.81592 0.74174 0.79288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.47 127.77 1.47 2.32 16 2 N -0.38 -7.27 4.01 -369.56 -1.48 -8.75 16 3 C 0.07 1.24 11.40 83.54 0.95 2.19 16 4 C -0.25 -5.80 5.35 -20.14 -0.11 -5.91 16 5 C -0.01 -0.37 4.99 29.85 0.15 -0.22 16 6 C -0.12 -3.34 4.23 29.85 0.13 -3.21 16 7 C 0.50 20.30 7.67 87.66 0.67 20.97 16 8 O -0.59 -29.22 15.56 -3.01 -0.05 -29.26 16 9 N -0.60 -24.24 2.44 -830.49 -2.03 -26.27 16 10 C 0.23 11.11 4.23 85.64 0.36 11.47 16 11 C -0.53 -31.04 9.94 25.60 0.25 -30.79 16 12 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 13 C 0.01 0.87 5.47 84.65 0.46 1.33 16 14 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 15 Si 0.94 44.51 27.47 68.60 1.88 46.39 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 19 C 0.19 5.85 5.74 85.63 0.49 6.34 16 20 C -0.04 -1.21 6.85 24.83 0.17 -1.04 16 21 C -0.21 -5.74 10.81 22.19 0.24 -5.50 16 22 C -0.23 -4.89 10.91 22.19 0.24 -4.65 16 23 C -0.03 -0.61 12.09 66.97 0.81 0.20 16 24 O -0.18 -4.37 9.54 -2.50 -0.02 -4.39 16 25 C 0.04 1.05 11.96 85.24 1.02 2.07 16 26 N -0.33 -8.41 12.58 -57.03 -0.72 -9.13 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 32 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 33 H 0.10 2.65 7.40 -2.39 -0.02 2.64 16 34 H 0.11 2.70 6.91 -2.39 -0.02 2.68 16 35 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 36 H 0.02 0.87 6.85 -2.39 -0.02 0.85 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.11 3.52 8.07 -2.39 -0.02 3.50 16 39 H 0.11 2.85 6.44 -2.39 -0.02 2.84 16 40 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.24 2.01 8.06 -2.91 -0.02 1.98 16 43 H 0.19 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -82.91 369.52 6.15 -76.76 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.95 Total: 18.15 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 7.31 Total: -4.43 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -3.93 Total: -103.21 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.07 Total: -33.66 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -82.91 6.15 -76.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162486580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.371 kcal (2) G-P(sol) polarization free energy of solvation -82.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds