Wall clock time and date at job start Tue Mar 31 2020 11:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00345 * 2 1 4 4 C 1.50694 * 109.47485 * 270.00280 * 3 2 1 5 5 H 1.08000 * 119.99748 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00092 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99841 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99798 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47031 * 89.99722 * 8 6 4 10 10 H 1.48499 * 109.47100 * 209.99505 * 8 6 4 11 11 H 1.48502 * 109.47435 * 329.99951 * 8 6 4 12 12 C 1.34780 * 119.99833 * 179.97438 * 2 1 3 13 13 O 1.21600 * 119.99695 * 184.59140 * 12 2 1 14 14 C 1.47525 * 120.00104 * 4.59380 * 12 2 1 15 15 C 1.39774 * 120.06885 * 138.23971 * 14 12 2 16 16 C 1.37715 * 120.14042 * 180.55921 * 15 14 12 17 17 C 1.39047 * 120.12271 * 359.48663 * 16 15 14 18 18 C 1.39773 * 119.93924 * 359.88434 * 17 16 15 19 19 C 1.38028 * 120.17967 * 0.68286 * 18 17 16 20 20 N 1.40378 * 119.47613 * 181.88832 * 18 17 16 21 21 C 1.34933 * 118.41401 * 48.66091 * 20 18 17 22 22 O 1.21298 * 120.27088 * 183.40755 * 21 20 18 23 23 C 1.50572 * 119.45690 * 3.40634 * 21 20 18 24 24 C 1.52603 * 110.32239 * 283.92123 * 23 21 20 25 25 N 1.39010 * 120.24753 * 179.06853 * 17 16 15 26 26 C 1.46903 * 110.99740 * 227.82560 * 25 17 16 27 27 H 1.08996 * 109.47431 * 264.66579 * 1 2 3 28 28 H 1.09002 * 109.46662 * 24.67281 * 1 2 3 29 29 H 1.09003 * 109.47130 * 144.66110 * 1 2 3 30 30 H 1.09001 * 109.46797 * 30.00339 * 3 2 1 31 31 H 1.08999 * 109.47146 * 149.99189 * 3 2 1 32 32 H 0.96999 * 119.99697 * 180.02562 * 7 6 4 33 33 H 1.08000 * 119.92414 * 0.27856 * 15 14 12 34 34 H 1.08000 * 119.94008 * 179.76157 * 16 15 14 35 35 H 1.07995 * 120.12981 * 179.40388 * 19 18 17 36 36 H 0.96994 * 120.79152 * 228.67984 * 20 18 17 37 37 H 1.08996 * 109.32623 * 163.66175 * 23 21 20 38 38 H 1.08995 * 109.32918 * 44.18267 * 23 21 20 39 39 H 1.09002 * 109.30147 * 283.54559 * 24 23 21 40 40 H 1.09000 * 109.30030 * 164.17347 * 24 23 21 41 41 H 1.09003 * 109.47218 * 63.13518 * 26 25 17 42 42 H 1.09002 * 109.47038 * 183.13567 * 26 25 17 43 43 H 1.08997 * 109.47203 * 303.13440 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2416 6 6 3.1271 2.8775 -1.6726 7 7 3.5544 3.6175 -0.6729 8 14 3.4390 3.4164 -3.4338 9 1 2.3093 4.2597 -3.9008 10 1 4.6996 4.1988 -3.4961 11 1 3.5559 2.2191 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3519 -1.1689 0.0848 14 6 1.4048 -2.4428 -0.1012 15 6 1.8923 -3.4684 -0.9163 16 6 1.2022 -4.6555 -1.0213 17 6 0.0231 -4.8425 -0.3086 18 6 -0.4614 -3.8248 0.5179 19 6 0.2200 -2.6286 0.6179 20 7 -1.6313 -4.0387 1.2638 21 6 -1.7352 -5.1756 1.9830 22 8 -2.7555 -5.4239 2.5902 23 6 -0.5743 -6.1336 2.0257 24 6 -0.4882 -6.9204 0.7210 25 7 -0.6858 -6.0324 -0.4276 26 6 -2.1141 -5.7738 -0.6536 27 1 -0.3634 -0.0955 1.0231 28 1 -0.3633 0.9339 -0.4290 29 1 -0.3633 -0.8383 -0.5944 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5139 32 1 4.0313 4.4433 -0.8502 33 1 2.8099 -3.3277 -1.4683 34 1 1.5799 -5.4443 -1.6550 35 1 -0.1602 -1.8393 1.2493 36 1 -2.3479 -3.3851 1.2619 37 1 -0.7086 -6.8262 2.8565 38 1 0.3498 -5.5743 2.1714 39 1 -1.2567 -7.6935 0.7151 40 1 0.4923 -7.3910 0.6481 41 1 -2.2430 -5.2480 -1.5997 42 1 -2.6538 -6.7202 -0.6875 43 1 -2.5055 -5.1613 0.1587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174755935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:38 Heat of formation + Delta-G solvation = 3.472335 kcal Electronic energy + Delta-G solvation = -26932.800601 eV Core-core repulsion = 23172.491110 eV Total energy + Delta-G solvation = -3760.309492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10086 -39.66440 -38.47793 -36.70482 -35.27978 -34.92298 -32.75471 -31.85210 -30.68110 -29.54369 -27.81470 -26.33729 -26.00312 -24.87985 -23.04662 -22.89993 -21.34286 -20.83949 -19.20273 -17.79462 -17.33068 -17.00211 -16.72329 -16.57985 -15.86930 -15.79735 -15.45220 -14.89349 -14.71420 -14.44183 -14.10727 -13.76236 -13.60681 -13.47651 -13.17960 -13.01471 -12.58109 -12.46694 -12.39331 -12.12913 -12.06396 -11.86662 -11.68224 -11.38257 -11.23016 -10.95337 -10.66287 -10.59426 -10.32824 -10.21046 -9.71245 -9.22412 -9.17571 -8.58282 -8.48651 -8.46549 -7.76488 -6.09906 -4.15356 0.74162 1.05548 2.07755 2.71108 3.07747 3.26977 3.33942 3.36875 3.37712 3.61409 3.91736 4.03866 4.39712 4.41291 4.54164 4.57307 4.84316 4.97035 5.01716 5.07098 5.17449 5.23311 5.25545 5.28363 5.34083 5.43038 5.54828 5.60572 5.64199 5.78369 5.84442 6.00886 6.11509 6.27322 6.33604 6.43393 6.49350 6.67348 6.95880 7.05383 7.35463 7.42778 7.63518 7.85881 8.15651 8.25810 8.79198 8.94775 9.50063 10.98206 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.003131 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.880962 B = 8942.066057 C = 9244.389953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.592 5.592 3 C 0.244 3.756 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.545 3.455 13 O -0.532 6.532 14 C -0.094 4.094 15 C -0.066 4.066 16 C -0.084 4.084 17 C 0.089 3.911 18 C 0.091 3.909 19 C -0.098 4.098 20 N -0.673 5.673 21 C 0.529 3.471 22 O -0.529 6.529 23 C -0.181 4.181 24 C 0.070 3.930 25 N -0.504 5.504 26 C -0.010 4.010 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.412 0.588 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 -19.440 2.120 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.323 5.323 3 C 0.125 3.875 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.331 3.669 13 O -0.410 6.410 14 C -0.099 4.099 15 C -0.086 4.086 16 C -0.103 4.103 17 C -0.008 4.008 18 C -0.005 4.005 19 C -0.119 4.119 20 N -0.324 5.324 21 C 0.319 3.681 22 O -0.404 6.404 23 C -0.223 4.223 24 C -0.057 4.057 25 N -0.223 5.223 26 C -0.157 4.157 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.252 0.748 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.392 -19.782 2.192 22.453 hybrid contribution -0.511 1.282 -0.343 1.422 sum -10.903 -18.501 1.849 21.554 Atomic orbital electron populations 1.21913 0.81575 1.03240 0.99792 1.48097 1.06190 1.07671 1.70340 1.19373 0.92722 0.77663 0.97733 1.21421 1.36823 1.06494 0.92156 0.92341 1.24939 0.95233 0.96337 0.97537 1.69930 1.38190 1.14307 1.30796 0.86480 0.77725 0.78640 0.84491 1.20611 1.21032 1.19816 1.18049 0.87224 0.83271 0.78315 1.90789 1.13298 1.86961 1.49923 1.20193 0.94946 0.95972 0.98743 1.21257 0.99417 0.91238 0.96642 1.20834 0.93456 0.97492 0.98542 1.18669 0.95733 0.90355 0.96035 1.18161 0.89752 0.96598 0.95946 1.21394 0.93493 0.97182 0.99796 1.43984 1.18728 1.22719 1.46949 1.20675 0.89057 0.81745 0.76657 1.90787 1.31285 1.74797 1.43543 1.22410 0.97968 0.99296 1.02601 1.22139 1.04513 0.94663 0.84336 1.58868 1.10358 1.13402 1.39643 1.23078 0.86667 1.02752 1.03200 0.93697 0.90425 0.92078 0.94764 0.93494 0.92622 0.84182 0.84176 0.84184 0.74770 0.87268 0.88442 0.89404 0.88580 0.90782 0.90984 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 8.92 59.85 0.53 1.72 16 2 N -0.59 -12.13 2.86 -184.20 -0.53 -12.66 16 3 C 0.24 6.21 5.17 -5.20 -0.03 6.19 16 4 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.55 11.06 7.31 -12.47 -0.09 10.97 16 13 O -0.53 -13.07 16.50 5.28 0.09 -12.98 16 14 C -0.09 -1.42 5.15 -104.94 -0.54 -1.96 16 15 C -0.07 -0.86 9.63 -39.20 -0.38 -1.24 16 16 C -0.08 -0.89 9.95 -39.47 -0.39 -1.28 16 17 C 0.09 0.91 4.35 -83.73 -0.36 0.55 16 18 C 0.09 0.95 5.11 -83.45 -0.43 0.53 16 19 C -0.10 -1.18 7.54 -39.06 -0.29 -1.48 16 20 N -0.67 -6.45 3.52 -9.74 -0.03 -6.49 16 21 C 0.53 5.64 5.18 -10.98 -0.06 5.58 16 22 O -0.53 -7.27 17.95 5.54 0.10 -7.17 16 23 C -0.18 -1.50 5.41 -28.15 -0.15 -1.65 16 24 C 0.07 0.51 6.03 -4.23 -0.03 0.49 16 25 N -0.50 -4.55 4.84 -179.39 -0.87 -5.42 16 26 C -0.01 -0.08 8.80 60.07 0.53 0.44 16 27 H 0.04 0.56 6.84 -51.93 -0.36 0.20 16 28 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 29 H 0.06 0.80 6.01 -51.93 -0.31 0.49 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.59 5.54 -52.49 -0.29 1.29 16 36 H 0.41 3.43 8.95 -40.82 -0.37 3.07 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.84 7.32 -51.93 -0.38 0.46 16 39 H 0.09 0.56 7.72 -51.93 -0.40 0.16 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 43 H 0.06 0.59 3.59 -52.21 -0.19 0.40 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -33.90 347.14 -7.98 -41.88 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.58 Total: 1.06 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.11 Total: 5.49 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.69 Total: -49.91 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.19 Total: -20.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.90 -7.98 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174755935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.354 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds