Wall clock time and date at job start Tue Mar 31 2020 11:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00345 * 2 1 4 4 C 1.50694 * 109.47485 * 270.00280 * 3 2 1 5 5 H 1.08000 * 119.99748 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00092 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99841 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99798 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47031 * 89.99722 * 8 6 4 10 10 H 1.48499 * 109.47100 * 209.99505 * 8 6 4 11 11 H 1.48502 * 109.47435 * 329.99951 * 8 6 4 12 12 C 1.34780 * 119.99833 * 179.97438 * 2 1 3 13 13 O 1.21600 * 119.99695 * 184.59140 * 12 2 1 14 14 C 1.47525 * 120.00104 * 4.59380 * 12 2 1 15 15 C 1.39774 * 120.06885 * 138.23971 * 14 12 2 16 16 C 1.37715 * 120.14042 * 180.55921 * 15 14 12 17 17 C 1.39047 * 120.12271 * 359.48663 * 16 15 14 18 18 C 1.39773 * 119.93924 * 359.88434 * 17 16 15 19 19 C 1.38028 * 120.17967 * 0.68286 * 18 17 16 20 20 N 1.40378 * 119.47613 * 181.88832 * 18 17 16 21 21 C 1.34933 * 118.41401 * 48.66091 * 20 18 17 22 22 O 1.21298 * 120.27088 * 183.40755 * 21 20 18 23 23 C 1.50572 * 119.45690 * 3.40634 * 21 20 18 24 24 C 1.52603 * 110.32239 * 283.92123 * 23 21 20 25 25 N 1.39010 * 120.24753 * 179.06853 * 17 16 15 26 26 C 1.46903 * 110.99740 * 227.82560 * 25 17 16 27 27 H 1.08996 * 109.47431 * 264.66579 * 1 2 3 28 28 H 1.09002 * 109.46662 * 24.67281 * 1 2 3 29 29 H 1.09003 * 109.47130 * 144.66110 * 1 2 3 30 30 H 1.09001 * 109.46797 * 30.00339 * 3 2 1 31 31 H 1.08999 * 109.47146 * 149.99189 * 3 2 1 32 32 H 0.96999 * 119.99697 * 180.02562 * 7 6 4 33 33 H 1.08000 * 119.92414 * 0.27856 * 15 14 12 34 34 H 1.08000 * 119.94008 * 179.76157 * 16 15 14 35 35 H 1.07995 * 120.12981 * 179.40388 * 19 18 17 36 36 H 0.96994 * 120.79152 * 228.67984 * 20 18 17 37 37 H 1.08996 * 109.32623 * 163.66175 * 23 21 20 38 38 H 1.08995 * 109.32918 * 44.18267 * 23 21 20 39 39 H 1.09002 * 109.30147 * 283.54559 * 24 23 21 40 40 H 1.09000 * 109.30030 * 164.17347 * 24 23 21 41 41 H 1.09003 * 109.47218 * 63.13518 * 26 25 17 42 42 H 1.09002 * 109.47038 * 183.13567 * 26 25 17 43 43 H 1.08997 * 109.47203 * 303.13440 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2416 6 6 3.1271 2.8775 -1.6726 7 7 3.5544 3.6175 -0.6729 8 14 3.4390 3.4164 -3.4338 9 1 2.3093 4.2597 -3.9008 10 1 4.6996 4.1988 -3.4961 11 1 3.5559 2.2191 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3519 -1.1689 0.0848 14 6 1.4048 -2.4428 -0.1012 15 6 1.8923 -3.4684 -0.9163 16 6 1.2022 -4.6555 -1.0213 17 6 0.0231 -4.8425 -0.3086 18 6 -0.4614 -3.8248 0.5179 19 6 0.2200 -2.6286 0.6179 20 7 -1.6313 -4.0387 1.2638 21 6 -1.7352 -5.1756 1.9830 22 8 -2.7555 -5.4239 2.5902 23 6 -0.5743 -6.1336 2.0257 24 6 -0.4882 -6.9204 0.7210 25 7 -0.6858 -6.0324 -0.4276 26 6 -2.1141 -5.7738 -0.6536 27 1 -0.3634 -0.0955 1.0231 28 1 -0.3633 0.9339 -0.4290 29 1 -0.3633 -0.8383 -0.5944 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5139 32 1 4.0313 4.4433 -0.8502 33 1 2.8099 -3.3277 -1.4683 34 1 1.5799 -5.4443 -1.6550 35 1 -0.1602 -1.8393 1.2493 36 1 -2.3479 -3.3851 1.2619 37 1 -0.7086 -6.8262 2.8565 38 1 0.3498 -5.5743 2.1714 39 1 -1.2567 -7.6935 0.7151 40 1 0.4923 -7.3910 0.6481 41 1 -2.2430 -5.2480 -1.5997 42 1 -2.6538 -6.7202 -0.6875 43 1 -2.5055 -5.1613 0.1587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174755935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:37 Heat of formation + Delta-G solvation = -20.726597 kcal Electronic energy + Delta-G solvation = -26933.849946 eV Core-core repulsion = 23172.491110 eV Total energy + Delta-G solvation = -3761.358836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.93211 -41.02016 -39.55530 -37.65799 -36.74731 -36.05308 -34.77415 -32.65836 -31.74074 -30.49601 -29.57588 -27.64449 -26.85337 -26.06897 -24.67076 -23.84111 -22.33388 -21.75403 -20.44993 -18.80020 -18.66920 -18.43193 -17.88673 -17.70000 -17.11939 -16.92943 -16.47860 -16.30234 -16.11823 -15.64062 -15.28722 -14.83742 -14.74279 -14.35061 -14.22279 -14.02687 -13.94205 -13.69230 -13.57219 -13.44728 -13.26570 -13.04673 -12.84817 -12.70018 -12.53482 -12.42061 -12.27273 -12.21055 -11.74061 -11.52484 -11.19020 -10.77877 -10.64993 -10.09482 -9.59860 -9.41544 -9.28255 -8.23667 -6.38852 -0.26850 0.12809 1.24478 1.37660 1.40424 1.50788 1.75375 1.90202 2.22278 2.41336 2.60100 2.67401 3.06376 3.24435 3.56609 3.64701 3.86421 3.94104 4.08032 4.22732 4.29645 4.33472 4.36702 4.44778 4.55528 4.57103 4.69280 4.78543 4.85470 4.86993 4.91349 4.96743 4.99273 5.13464 5.20068 5.33649 5.45514 5.52064 5.62496 5.76494 5.78892 5.85860 6.03097 6.24210 6.62839 6.71122 6.83499 7.22243 7.37292 8.83654 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.003131 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.880962 B = 8942.066057 C = 9244.389953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.600 5.600 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.271 1.271 12 C 0.540 3.460 13 O -0.590 6.590 14 C -0.115 4.115 15 C -0.070 4.070 16 C -0.071 4.071 17 C 0.103 3.897 18 C 0.100 3.900 19 C -0.088 4.088 20 N -0.666 5.666 21 C 0.529 3.471 22 O -0.562 6.562 23 C -0.179 4.179 24 C 0.069 3.931 25 N -0.505 5.505 26 C -0.011 4.011 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.002 0.998 32 H 0.268 0.732 33 H 0.130 0.870 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.419 0.581 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.538 -21.624 1.010 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.329 5.329 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.196 1.196 12 C 0.329 3.671 13 O -0.472 6.472 14 C -0.119 4.119 15 C -0.090 4.090 16 C -0.090 4.090 17 C 0.006 3.994 18 C 0.004 3.996 19 C -0.109 4.109 20 N -0.316 5.316 21 C 0.320 3.680 22 O -0.439 6.439 23 C -0.221 4.221 24 C -0.056 4.056 25 N -0.224 5.224 26 C -0.158 4.158 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.020 0.980 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.260 0.740 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.147 -21.977 1.081 25.134 hybrid contribution -0.051 1.863 0.054 1.864 sum -12.198 -20.115 1.135 23.552 Atomic orbital electron populations 1.22187 0.78159 1.04036 1.02253 1.48078 1.08313 1.06274 1.70271 1.18841 0.91297 0.79875 0.96316 1.21694 1.37098 1.06749 0.92896 0.92683 1.25862 0.94778 0.96359 1.02046 1.70049 1.38787 1.14781 1.33095 0.85398 0.78053 0.78284 0.78987 1.18879 1.20644 1.19553 1.18849 0.86878 0.84725 0.76646 1.90739 1.16003 1.87989 1.52460 1.19706 0.96365 0.93917 1.01923 1.21239 0.99429 0.91801 0.96495 1.20952 0.93018 0.96771 0.98292 1.18817 0.95227 0.90686 0.94641 1.18060 0.89749 0.96041 0.95762 1.21296 0.92401 0.98074 0.99120 1.43941 1.18429 1.22780 1.46459 1.21087 0.89151 0.81928 0.75839 1.90779 1.32750 1.75486 1.44920 1.22475 0.96623 0.99138 1.03858 1.22296 1.06232 0.94281 0.82840 1.58939 1.10368 1.12612 1.40455 1.23104 0.86480 1.03383 1.02834 0.90611 0.91000 0.89583 0.95471 0.97995 0.92329 0.85218 0.81684 0.83472 0.74045 0.85894 0.88573 0.87955 0.86679 0.90834 0.89744 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 8.92 127.77 1.14 3.36 16 2 N -0.60 -25.30 2.86 -854.93 -2.44 -27.75 16 3 C 0.26 13.81 5.17 85.63 0.44 14.25 16 4 C -0.55 -31.15 9.39 25.60 0.24 -30.91 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.50 5.46 84.66 0.46 0.96 16 7 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 8 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.54 22.71 7.31 86.69 0.63 23.35 16 13 O -0.59 -30.78 16.50 -4.03 -0.07 -30.85 16 14 C -0.12 -3.42 5.15 -20.07 -0.10 -3.52 16 15 C -0.07 -1.77 9.63 22.52 0.22 -1.56 16 16 C -0.07 -1.31 9.95 22.34 0.22 -1.09 16 17 C 0.10 1.80 4.35 38.57 0.17 1.97 16 18 C 0.10 1.84 5.11 38.09 0.19 2.03 16 19 C -0.09 -1.98 7.54 22.61 0.17 -1.81 16 20 N -0.67 -11.10 3.52 -303.02 -1.07 -12.17 16 21 C 0.53 9.99 5.18 87.59 0.45 10.44 16 22 O -0.56 -14.41 17.95 -3.08 -0.06 -14.46 16 23 C -0.18 -2.42 5.41 29.68 0.16 -2.26 16 24 C 0.07 0.74 6.03 86.24 0.52 1.26 16 25 N -0.50 -7.24 4.84 -721.45 -3.49 -10.74 16 26 C -0.01 -0.15 8.80 127.69 1.12 0.97 16 27 H 0.08 1.76 6.84 -2.39 -0.02 1.74 16 28 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 29 H 0.09 2.10 6.01 -2.39 -0.01 2.09 16 30 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 31 H 0.00 0.12 7.36 -2.39 -0.02 0.10 16 32 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 33 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.15 3.04 5.54 -2.91 -0.02 3.03 16 36 H 0.42 5.99 8.95 -92.71 -0.83 5.16 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.36 7.32 -2.39 -0.02 1.34 16 39 H 0.10 0.87 7.72 -2.39 -0.02 0.85 16 40 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.03 7.84 -2.39 -0.02 1.01 16 43 H 0.05 0.87 3.59 -2.94 -0.01 0.86 16 Total: -1.00 -76.86 347.14 1.46 -75.40 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.22 Total: 12.15 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 6.05 Total: 17.46 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -6.72 Total: -106.00 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.12 Total: -45.31 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.86 1.46 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174755935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.673 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds