Wall clock time and date at job start Tue Mar 31 2020 11:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99945 * 2 1 4 4 C 1.50699 * 109.47212 * 270.00039 * 3 2 1 5 5 H 1.08004 * 120.00324 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00135 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99883 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00218 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47110 * 89.99877 * 8 6 4 10 10 H 1.48500 * 109.46976 * 209.99789 * 8 6 4 11 11 H 1.48492 * 109.47079 * 329.99718 * 8 6 4 12 12 C 1.34780 * 119.99743 * 180.02562 * 2 1 3 13 13 O 1.21594 * 119.99428 * 179.97438 * 12 2 1 14 14 N 1.34766 * 120.00150 * 359.97438 * 12 2 1 15 15 C 1.39948 * 120.00003 * 184.50873 * 14 12 2 16 16 C 1.38932 * 120.03646 * 324.20844 * 15 14 12 17 17 C 1.38138 * 120.07601 * 180.02562 * 16 15 14 18 18 C 1.38184 * 120.13523 * 359.69799 * 17 16 15 19 19 C 1.38900 * 120.06577 * 0.55668 * 18 17 16 20 20 N 1.39928 * 120.03503 * 179.74971 * 19 18 17 21 21 C 1.46768 * 124.34709 * 353.99275 * 20 19 18 22 22 C 1.54481 * 105.47263 * 162.98922 * 21 20 19 23 23 C 1.54629 * 101.76657 * 25.41634 * 22 21 20 24 24 C 1.34415 * 124.35211 * 174.00056 * 20 19 18 25 25 O 1.21286 * 124.94503 * 0.66684 * 24 20 19 26 26 C 1.38722 * 120.03554 * 144.22931 * 15 14 12 27 27 H 1.09000 * 109.47167 * 269.99602 * 1 2 3 28 28 H 1.09009 * 109.47318 * 30.00004 * 1 2 3 29 29 H 1.09004 * 109.47119 * 149.99695 * 1 2 3 30 30 H 1.08998 * 109.47125 * 30.00194 * 3 2 1 31 31 H 1.09000 * 109.46565 * 150.00325 * 3 2 1 32 32 H 0.97001 * 120.00213 * 180.02562 * 7 6 4 33 33 H 0.97004 * 120.00019 * 4.51120 * 14 12 2 34 34 H 1.08003 * 119.96537 * 0.02562 * 16 15 14 35 35 H 1.07992 * 119.93592 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.96542 * 180.29934 * 18 17 16 37 37 H 1.08995 * 110.24623 * 43.98635 * 21 20 19 38 38 H 1.08998 * 110.24716 * 281.98494 * 21 20 19 39 39 H 1.08996 * 110.96654 * 267.29807 * 22 21 20 40 40 H 1.08999 * 111.00350 * 143.55212 * 22 21 20 41 41 H 1.08995 * 110.48569 * 216.52527 * 23 22 21 42 42 H 1.08994 * 110.48411 * 93.87696 * 23 22 21 43 43 H 1.08007 * 120.06574 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2418 6 6 3.1268 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.3077 4.2607 -3.8998 10 1 4.6982 4.1995 -3.4968 11 1 3.5538 2.2203 -4.3051 12 6 2.1388 -1.1673 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1615 -3.5445 0.0942 16 6 3.3988 -3.6848 -0.5218 17 6 4.0868 -4.8791 -0.4293 18 6 3.5499 -5.9357 0.2811 19 6 2.3108 -5.8036 0.8949 20 7 1.7654 -6.8757 1.6097 21 6 2.3560 -8.2180 1.6681 22 6 1.6886 -8.9097 2.8774 23 6 0.3473 -8.1468 2.9763 24 6 0.6332 -6.8087 2.3310 25 8 -0.0611 -5.8206 2.4440 26 6 1.6170 -4.6054 0.8030 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0310 4.4435 -0.8503 33 1 0.4972 -2.3356 -0.0662 34 1 3.8234 -2.8592 -1.0738 35 1 5.0482 -4.9858 -0.9094 36 1 4.0923 -6.8667 0.3558 37 1 3.4332 -8.1499 1.8197 38 1 2.1373 -8.7665 0.7519 39 1 2.2824 -8.7735 3.7812 40 1 1.5216 -9.9684 2.6788 41 1 0.0601 -8.0138 4.0193 42 1 -0.4333 -8.6752 2.4290 43 1 0.6552 -4.4987 1.2828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176545830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:59 Heat of formation + Delta-G solvation = -12.950473 kcal Electronic energy + Delta-G solvation = -26003.450569 eV Core-core repulsion = 22242.428931 eV Total energy + Delta-G solvation = -3761.021638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26621 -39.98459 -38.19347 -36.86470 -35.01835 -34.36523 -33.04895 -32.46565 -29.84714 -28.84104 -28.05900 -27.54285 -25.74644 -23.64375 -23.16944 -22.69648 -21.14438 -20.30892 -19.06741 -18.04771 -17.39038 -17.05510 -16.54264 -16.25138 -15.89073 -15.53736 -14.92038 -14.83594 -14.40927 -14.24035 -14.05801 -13.83550 -13.66407 -13.31139 -13.20575 -13.08570 -12.78349 -12.39535 -12.17309 -12.07003 -11.86935 -11.61580 -11.57107 -11.51864 -11.17051 -10.89195 -10.55327 -10.52953 -10.13278 -9.84064 -9.72822 -9.61909 -9.16419 -8.41219 -8.20972 -7.80546 -7.51448 -6.01670 -4.06384 1.35498 1.50627 2.40411 2.53254 3.27343 3.32003 3.38574 3.44012 3.74811 3.86860 3.96072 4.13631 4.31955 4.42458 4.52651 4.58128 4.96777 5.00391 5.03111 5.16171 5.21930 5.30408 5.32174 5.46624 5.48137 5.55456 5.57516 5.64314 5.84583 5.91083 6.14949 6.15887 6.34391 6.58410 6.67480 6.83203 6.89550 6.96600 7.34232 7.38704 7.53499 7.70213 7.81119 7.96431 8.25594 8.61143 8.94444 9.27159 9.58903 11.06216 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.002707 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.210435 B =10340.584315 C =11000.623727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.699 3.301 13 O -0.568 6.568 14 N -0.695 5.695 15 C 0.207 3.793 16 C -0.140 4.140 17 C -0.076 4.076 18 C -0.182 4.182 19 C 0.174 3.826 20 N -0.557 5.557 21 C 0.096 3.904 22 C -0.132 4.132 23 C -0.153 4.153 24 C 0.512 3.488 25 O -0.510 6.510 26 C -0.192 4.192 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 -27.182 5.514 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.400 3.600 13 O -0.444 6.444 14 N -0.345 5.345 15 C 0.109 3.891 16 C -0.161 4.161 17 C -0.095 4.095 18 C -0.204 4.204 19 C 0.080 3.920 20 N -0.281 5.281 21 C -0.027 4.027 22 C -0.170 4.170 23 C -0.193 4.193 24 C 0.301 3.699 25 O -0.385 6.385 26 C -0.215 4.215 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.229 -26.318 5.641 27.419 hybrid contribution -0.292 0.374 -1.017 1.122 sum -5.521 -25.944 4.624 26.925 Atomic orbital electron populations 1.21603 0.81619 1.02346 1.00526 1.47499 1.05766 1.06293 1.75157 1.19260 0.92412 0.76833 0.97502 1.21455 1.36422 1.06247 0.92354 0.92474 1.24934 0.95371 0.96397 0.97432 1.69936 1.38446 1.14331 1.30701 0.86487 0.77645 0.78557 0.84669 1.20683 1.21090 1.19917 1.15900 0.85567 0.80015 0.78479 1.90884 1.11269 1.85493 1.56719 1.42971 1.10105 1.03661 1.77731 1.17337 0.92887 0.84735 0.94094 1.21468 0.95276 0.98426 1.00970 1.20809 0.99264 0.91950 0.97470 1.20611 0.95044 1.00471 1.04255 1.17325 0.93188 0.86574 0.94897 1.45738 1.24921 1.10599 1.46854 1.22244 0.99473 0.81391 0.99568 1.22626 0.95521 1.00350 0.98457 1.22344 0.99427 0.93928 1.03636 1.21086 0.79912 0.90448 0.78462 1.90652 1.50823 1.35773 1.61246 1.21186 1.04128 0.92408 1.03747 0.93555 0.90235 0.93156 0.94732 0.93625 0.92717 0.76073 0.83645 0.85452 0.86136 0.89403 0.90088 0.89591 0.88643 0.87566 0.87387 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.24 59.85 0.61 2.00 16 2 N -0.61 -13.62 2.86 -188.74 -0.54 -14.16 16 3 C 0.26 6.95 5.16 -5.19 -0.03 6.92 16 4 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.70 15.72 8.12 -86.92 -0.71 15.02 16 13 O -0.57 -14.91 13.40 5.28 0.07 -14.84 16 14 N -0.70 -12.56 5.21 -14.24 -0.07 -12.64 16 15 C 0.21 3.62 6.28 -83.72 -0.53 3.09 16 16 C -0.14 -2.45 8.69 -39.36 -0.34 -2.79 16 17 C -0.08 -1.04 10.03 -39.64 -0.40 -1.44 16 18 C -0.18 -2.21 9.42 -39.36 -0.37 -2.58 16 19 C 0.17 2.34 6.59 -83.72 -0.55 1.78 16 20 N -0.56 -5.87 3.14 -112.29 -0.35 -6.22 16 21 C 0.10 0.54 6.51 -3.12 -0.02 0.52 16 22 C -0.13 -0.47 7.18 -25.10 -0.18 -0.65 16 23 C -0.15 -0.89 6.86 -26.74 -0.18 -1.07 16 24 C 0.51 5.73 7.92 -10.86 -0.09 5.64 16 25 O -0.51 -7.76 14.81 5.55 0.08 -7.68 16 26 C -0.19 -3.03 9.21 -39.21 -0.36 -3.39 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.33 8.07 -51.92 -0.42 0.91 16 29 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 30 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.40 6.06 6.52 -40.82 -0.27 5.79 16 34 H 0.15 2.93 6.27 -52.48 -0.33 2.60 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.06 6.73 -52.49 -0.35 0.71 16 37 H 0.09 0.42 7.22 -51.93 -0.38 0.04 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.15 2.54 5.25 -52.48 -0.28 2.26 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -36.80 355.50 -8.95 -45.75 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.65 Total: 4.24 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -3.56 Total: 9.25 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.23 Total: -59.19 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.15 Total: -22.52 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.80 -8.95 -45.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176545830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.802 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds