Wall clock time and date at job start Tue Mar 31 2020 11:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99945 * 2 1 4 4 C 1.50699 * 109.47212 * 270.00039 * 3 2 1 5 5 H 1.08004 * 120.00324 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00135 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99883 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00218 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47110 * 89.99877 * 8 6 4 10 10 H 1.48500 * 109.46976 * 209.99789 * 8 6 4 11 11 H 1.48492 * 109.47079 * 329.99718 * 8 6 4 12 12 C 1.34780 * 119.99743 * 180.02562 * 2 1 3 13 13 O 1.21594 * 119.99428 * 179.97438 * 12 2 1 14 14 N 1.34766 * 120.00150 * 359.97438 * 12 2 1 15 15 C 1.39948 * 120.00003 * 184.50873 * 14 12 2 16 16 C 1.38932 * 120.03646 * 324.20844 * 15 14 12 17 17 C 1.38138 * 120.07601 * 180.02562 * 16 15 14 18 18 C 1.38184 * 120.13523 * 359.69799 * 17 16 15 19 19 C 1.38900 * 120.06577 * 0.55668 * 18 17 16 20 20 N 1.39928 * 120.03503 * 179.74971 * 19 18 17 21 21 C 1.46768 * 124.34709 * 353.99275 * 20 19 18 22 22 C 1.54481 * 105.47263 * 162.98922 * 21 20 19 23 23 C 1.54629 * 101.76657 * 25.41634 * 22 21 20 24 24 C 1.34415 * 124.35211 * 174.00056 * 20 19 18 25 25 O 1.21286 * 124.94503 * 0.66684 * 24 20 19 26 26 C 1.38722 * 120.03554 * 144.22931 * 15 14 12 27 27 H 1.09000 * 109.47167 * 269.99602 * 1 2 3 28 28 H 1.09009 * 109.47318 * 30.00004 * 1 2 3 29 29 H 1.09004 * 109.47119 * 149.99695 * 1 2 3 30 30 H 1.08998 * 109.47125 * 30.00194 * 3 2 1 31 31 H 1.09000 * 109.46565 * 150.00325 * 3 2 1 32 32 H 0.97001 * 120.00213 * 180.02562 * 7 6 4 33 33 H 0.97004 * 120.00019 * 4.51120 * 14 12 2 34 34 H 1.08003 * 119.96537 * 0.02562 * 16 15 14 35 35 H 1.07992 * 119.93592 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.96542 * 180.29934 * 18 17 16 37 37 H 1.08995 * 110.24623 * 43.98635 * 21 20 19 38 38 H 1.08998 * 110.24716 * 281.98494 * 21 20 19 39 39 H 1.08996 * 110.96654 * 267.29807 * 22 21 20 40 40 H 1.08999 * 111.00350 * 143.55212 * 22 21 20 41 41 H 1.08995 * 110.48569 * 216.52527 * 23 22 21 42 42 H 1.08994 * 110.48411 * 93.87696 * 23 22 21 43 43 H 1.08007 * 120.06574 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2418 6 6 3.1268 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.3077 4.2607 -3.8998 10 1 4.6982 4.1995 -3.4968 11 1 3.5538 2.2203 -4.3051 12 6 2.1388 -1.1673 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1615 -3.5445 0.0942 16 6 3.3988 -3.6848 -0.5218 17 6 4.0868 -4.8791 -0.4293 18 6 3.5499 -5.9357 0.2811 19 6 2.3108 -5.8036 0.8949 20 7 1.7654 -6.8757 1.6097 21 6 2.3560 -8.2180 1.6681 22 6 1.6886 -8.9097 2.8774 23 6 0.3473 -8.1468 2.9763 24 6 0.6332 -6.8087 2.3310 25 8 -0.0611 -5.8206 2.4440 26 6 1.6170 -4.6054 0.8030 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0310 4.4435 -0.8503 33 1 0.4972 -2.3356 -0.0662 34 1 3.8234 -2.8592 -1.0738 35 1 5.0482 -4.9858 -0.9094 36 1 4.0923 -6.8667 0.3558 37 1 3.4332 -8.1499 1.8197 38 1 2.1373 -8.7665 0.7519 39 1 2.2824 -8.7735 3.7812 40 1 1.5216 -9.9684 2.6788 41 1 0.0601 -8.0138 4.0193 42 1 -0.4333 -8.6752 2.4290 43 1 0.6552 -4.4987 1.2828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176545830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:58 Heat of formation + Delta-G solvation = -37.827809 kcal Electronic energy + Delta-G solvation = -26004.529332 eV Core-core repulsion = 22242.428931 eV Total energy + Delta-G solvation = -3762.100400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15865 -41.47552 -39.46522 -37.72918 -36.74385 -35.89435 -34.68253 -33.80446 -31.13535 -29.97011 -29.43121 -28.54002 -27.40574 -25.29673 -24.30557 -23.78562 -22.09070 -21.56082 -20.35273 -19.35239 -18.72021 -18.69516 -17.72028 -17.43028 -17.27008 -16.62451 -16.55247 -16.38950 -15.91948 -15.31096 -14.96204 -14.94060 -14.79227 -14.45428 -14.40037 -14.30735 -13.97043 -13.70546 -13.51961 -13.45758 -13.21107 -12.93740 -12.82793 -12.65559 -12.52353 -12.27802 -12.20132 -12.07500 -11.76046 -11.53779 -11.12040 -10.80892 -10.67809 -10.64604 -9.64610 -9.29995 -8.81104 -8.22801 -6.38079 0.22431 0.32460 1.35786 1.39011 1.48676 1.51858 1.59287 1.89354 2.12449 2.38442 2.86475 2.98756 3.06872 3.31815 3.58393 3.97547 4.03816 4.13777 4.16369 4.22090 4.29942 4.39091 4.48161 4.58251 4.62130 4.66349 4.76298 4.78421 4.87451 4.91148 5.10814 5.12542 5.15413 5.22016 5.30863 5.38232 5.49326 5.53548 5.65318 5.76055 6.01626 6.03774 6.08721 6.10896 6.69853 6.95229 6.98317 7.28498 7.55722 8.84046 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.002707 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.210435 B =10340.584315 C =11000.623727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.275 3.725 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.694 3.306 13 O -0.615 6.615 14 N -0.680 5.680 15 C 0.179 3.821 16 C -0.170 4.170 17 C -0.070 4.070 18 C -0.162 4.162 19 C 0.174 3.826 20 N -0.560 5.560 21 C 0.084 3.916 22 C -0.118 4.118 23 C -0.145 4.145 24 C 0.494 3.506 25 O -0.562 6.562 26 C -0.202 4.202 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.000 1.000 32 H 0.268 0.732 33 H 0.415 0.585 34 H 0.109 0.891 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -30.911 5.134 31.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.355 5.355 3 C 0.154 3.846 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.396 3.604 13 O -0.495 6.495 14 N -0.330 5.330 15 C 0.083 3.917 16 C -0.192 4.192 17 C -0.089 4.089 18 C -0.183 4.183 19 C 0.079 3.921 20 N -0.283 5.283 21 C -0.037 4.037 22 C -0.155 4.155 23 C -0.184 4.184 24 C 0.286 3.714 25 O -0.441 6.441 26 C -0.225 4.225 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.255 0.745 34 H 0.127 0.873 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.147 0.853 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.557 -30.136 5.274 31.095 hybrid contribution -0.211 1.374 -0.819 1.613 sum -5.768 -28.763 4.455 29.672 Atomic orbital electron populations 1.21885 0.78095 1.03900 1.02530 1.47386 1.07917 1.04899 1.75265 1.18740 0.90902 0.78697 0.96262 1.21677 1.36995 1.06603 0.92871 0.93054 1.25863 0.94797 0.96326 1.02118 1.70053 1.38868 1.14789 1.33044 0.85378 0.78155 0.78132 0.78895 1.18727 1.20439 1.19956 1.16060 0.85154 0.80989 0.78187 1.90841 1.13491 1.86388 1.58750 1.42649 1.10578 1.02746 1.77032 1.17532 0.93510 0.84757 0.95863 1.21335 0.96116 0.99189 1.02512 1.21110 0.99835 0.90867 0.97117 1.21008 0.94192 1.01352 1.01758 1.17548 0.93401 0.86742 0.94421 1.46085 1.24944 1.11531 1.45721 1.22707 1.00358 0.78949 1.01646 1.22691 0.93504 1.01555 0.97749 1.22418 1.01505 0.90890 1.03603 1.22220 0.79385 0.91747 0.78095 1.90617 1.52423 1.38132 1.62933 1.21152 1.04135 0.93224 1.03965 0.91268 0.90248 0.90037 0.95183 0.98158 0.92308 0.74540 0.87318 0.82844 0.81596 0.87911 0.88052 0.89020 0.85252 0.86852 0.85424 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.24 127.77 1.31 3.92 16 2 N -0.62 -28.89 2.86 -869.30 -2.48 -31.38 16 3 C 0.28 15.61 5.16 85.63 0.44 16.05 16 4 C -0.54 -32.39 9.39 25.60 0.24 -32.15 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 8 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 12 C 0.69 33.15 8.12 179.06 1.45 34.60 16 13 O -0.61 -34.79 13.40 -4.01 -0.05 -34.85 16 14 N -0.68 -25.83 5.21 -317.24 -1.65 -27.48 16 15 C 0.18 6.57 6.28 38.13 0.24 6.81 16 16 C -0.17 -6.23 8.69 22.41 0.19 -6.04 16 17 C -0.07 -1.87 10.03 22.23 0.22 -1.65 16 18 C -0.16 -3.47 9.42 22.42 0.21 -3.26 16 19 C 0.17 4.43 6.59 38.13 0.25 4.68 16 20 N -0.56 -10.43 3.14 -627.76 -1.97 -12.40 16 21 C 0.08 0.56 6.51 86.83 0.57 1.13 16 22 C -0.12 -0.26 7.18 31.65 0.23 -0.04 16 23 C -0.14 -1.21 6.86 30.59 0.21 -1.00 16 24 C 0.49 10.37 7.92 87.90 0.70 11.06 16 25 O -0.56 -17.40 14.81 -3.05 -0.05 -17.44 16 26 C -0.20 -6.52 9.21 22.51 0.21 -6.31 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.08 2.65 8.07 -2.38 -0.02 2.63 16 29 H 0.08 2.18 6.30 -2.39 -0.02 2.16 16 30 H 0.03 1.70 8.07 -2.39 -0.02 1.69 16 31 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.42 12.90 6.52 -92.71 -0.60 12.30 16 34 H 0.11 4.78 6.27 -2.91 -0.02 4.76 16 35 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 36 H 0.17 2.04 6.73 -2.91 -0.02 2.02 16 37 H 0.10 0.43 7.22 -2.39 -0.02 0.41 16 38 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.13 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.14 4.95 5.25 -2.91 -0.02 4.94 16 Total: -1.00 -87.46 355.50 3.48 -83.98 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.44 Total: 19.77 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 6.93 Total: 28.75 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -5.82 Total: -128.27 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.10 Total: -52.29 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -87.46 3.48 -83.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176545830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.153 kcal (2) G-P(sol) polarization free energy of solvation -87.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds