Wall clock time and date at job start Tue Mar 31 2020 11:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00441 * 2 1 4 4 C 1.50696 * 109.47094 * 270.00071 * 3 2 1 5 5 H 1.08003 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00277 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99766 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00085 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47046 * 119.99860 * 8 6 4 11 11 H 1.48501 * 109.47101 * 239.99849 * 8 6 4 12 12 C 1.34781 * 119.99736 * 179.97438 * 2 1 3 13 13 O 1.21586 * 120.00178 * 180.02562 * 12 2 1 14 14 N 1.34783 * 119.99666 * 0.02562 * 12 2 1 15 15 C 1.40113 * 119.99429 * 184.44089 * 14 12 2 16 16 C 1.38697 * 120.09592 * 325.32370 * 15 14 12 17 17 C 1.38208 * 119.99675 * 180.26388 * 16 15 14 18 18 C 1.38297 * 120.19640 * 359.73731 * 17 16 15 19 19 C 1.38207 * 120.19111 * 359.97438 * 18 17 16 20 20 C 1.38706 * 120.00267 * 0.02562 * 19 18 17 21 21 N 1.40086 * 120.09903 * 179.97438 * 20 19 18 22 22 C 1.46768 * 124.34550 * 89.99968 * 21 20 19 23 23 C 1.54475 * 105.47145 * 197.01768 * 22 21 20 24 24 C 1.54633 * 101.76578 * 334.58426 * 23 22 21 25 25 C 1.34408 * 124.35226 * 270.00023 * 21 20 19 26 26 O 1.21297 * 124.94442 * 359.62379 * 25 21 20 27 27 H 1.09004 * 109.46967 * 270.00406 * 1 2 3 28 28 H 1.09006 * 109.47048 * 30.00033 * 1 2 3 29 29 H 1.08998 * 109.47830 * 149.99989 * 1 2 3 30 30 H 1.09003 * 109.47461 * 29.99971 * 3 2 1 31 31 H 1.09001 * 109.47367 * 149.99731 * 3 2 1 32 32 H 0.96996 * 119.99549 * 180.02562 * 7 6 4 33 33 H 0.96992 * 120.00106 * 4.42964 * 14 12 2 34 34 H 1.08000 * 120.00346 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.90446 * 179.77085 * 17 16 15 36 36 H 1.08000 * 119.90738 * 180.02562 * 18 17 16 37 37 H 1.08003 * 120.00256 * 179.97438 * 19 18 17 38 38 H 1.08998 * 110.24313 * 78.01490 * 22 21 20 39 39 H 1.09001 * 110.24724 * 316.01366 * 22 21 20 40 40 H 1.08997 * 110.97313 * 92.70389 * 23 22 21 41 41 H 1.08999 * 110.97147 * 216.46792 * 23 22 21 42 42 H 1.08997 * 110.48877 * 143.47936 * 24 23 22 43 43 H 1.09002 * 110.48407 * 265.98926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.5545 3.6174 -0.6732 8 14 3.4390 3.4161 -3.4339 9 1 2.8619 2.4156 -4.3673 10 1 2.8020 4.7370 -3.6676 11 1 4.9017 3.5237 -3.6669 12 6 2.1388 -1.1673 0.0005 13 8 3.3547 -1.1674 0.0010 14 7 1.4648 -2.3345 0.0005 15 6 2.1622 -3.5460 0.0950 16 6 3.4077 -3.6799 -0.5003 17 6 4.0914 -4.8776 -0.4104 18 6 3.5398 -5.9436 0.2767 19 6 2.3018 -5.8171 0.8779 20 6 1.6086 -4.6187 0.7928 21 7 0.3534 -4.4884 1.4011 22 6 0.1449 -4.0305 2.7798 23 6 -1.2949 -4.4568 3.1423 24 6 -1.9642 -4.5230 1.7499 25 6 -0.8146 -4.7667 0.7971 26 8 -0.9302 -5.1571 -0.3455 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3635 -0.8899 -0.5138 30 1 1.6086 2.0284 0.5138 31 1 3.1499 1.1383 0.5139 32 1 4.0313 4.4432 -0.8505 33 1 0.4971 -2.3356 -0.0647 34 1 3.8416 -2.8494 -1.0373 35 1 5.0595 -4.9814 -0.8777 36 1 4.0783 -6.8773 0.3443 37 1 1.8737 -6.6516 1.4134 38 1 0.2429 -2.9464 2.8360 39 1 0.8598 -4.5098 3.4487 40 1 -1.3026 -5.4337 3.6256 41 1 -1.7767 -3.7082 3.7713 42 1 -2.6761 -5.3473 1.7076 43 1 -2.4598 -3.5799 1.5196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176545933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:01 Heat of formation + Delta-G solvation = -13.820211 kcal Electronic energy + Delta-G solvation = -26981.712789 eV Core-core repulsion = 23220.653436 eV Total energy + Delta-G solvation = -3761.059353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13807 -39.84937 -38.31036 -36.54274 -35.06777 -34.40658 -33.05544 -32.55784 -29.85748 -28.84630 -27.81925 -27.63129 -25.83868 -23.48457 -23.20127 -22.17007 -21.84623 -19.94092 -19.39183 -18.05777 -17.36211 -16.86492 -16.75965 -16.52564 -15.64228 -15.24488 -15.08303 -14.75145 -14.54521 -14.11671 -13.98007 -13.75757 -13.58528 -13.31584 -13.22676 -12.96016 -12.90037 -12.38283 -12.24208 -11.97840 -11.80557 -11.73306 -11.49151 -11.31223 -11.22919 -10.91113 -10.62080 -10.19922 -10.13683 -10.07303 -9.66159 -9.35809 -9.03905 -8.71848 -8.45913 -8.03164 -7.63296 -6.06717 -4.11394 1.26429 1.49379 2.35874 2.75806 3.14231 3.28989 3.36847 3.41900 3.61274 3.93724 4.13062 4.24200 4.36157 4.49344 4.50249 4.74507 4.94329 5.11500 5.17608 5.22838 5.27544 5.33256 5.38835 5.43751 5.46821 5.53401 5.62678 5.67164 5.77099 5.90692 6.05259 6.24156 6.39269 6.52107 6.63882 6.74145 6.77192 6.87514 7.22707 7.29633 7.44650 7.61250 7.90902 8.02361 8.19837 8.50006 8.89399 9.16678 9.54197 11.01208 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.003833 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.439840 B = 7303.566519 C = 8263.085417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.610 5.610 3 C 0.260 3.740 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.698 3.302 13 O -0.566 6.566 14 N -0.692 5.692 15 C 0.192 3.808 16 C -0.116 4.116 17 C -0.093 4.093 18 C -0.140 4.140 19 C -0.093 4.093 20 C 0.096 3.904 21 N -0.571 5.571 22 C 0.103 3.897 23 C -0.130 4.130 24 C -0.154 4.154 25 C 0.513 3.487 26 O -0.521 6.521 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.400 0.600 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 -17.915 9.331 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.346 5.346 3 C 0.141 3.859 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.400 3.600 13 O -0.442 6.442 14 N -0.341 5.341 15 C 0.094 3.906 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.160 4.160 19 C -0.113 4.113 20 C 0.004 3.996 21 N -0.303 5.303 22 C -0.019 4.019 23 C -0.168 4.168 24 C -0.194 4.194 25 C 0.301 3.699 26 O -0.396 6.396 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.721 -17.775 8.753 21.648 hybrid contribution -0.345 0.475 -0.932 1.101 sum -9.066 -17.301 7.821 21.040 Atomic orbital electron populations 1.21586 0.81731 1.02386 1.00303 1.47509 1.05691 1.06312 1.75053 1.19270 0.92360 0.76714 0.97593 1.21490 1.36496 1.06287 0.92348 0.92422 1.24922 0.95288 0.96342 0.97468 1.69941 1.38405 1.14353 1.30661 0.86438 0.78114 0.78290 0.84557 1.19824 1.20953 1.20830 1.15916 0.85557 0.79975 0.78546 1.90882 1.11196 1.85448 1.56703 1.42943 1.10025 1.03599 1.77545 1.17793 0.93279 0.84677 0.94863 1.21460 0.94160 0.98679 0.99415 1.21158 0.99701 0.92317 0.97972 1.20934 0.95637 0.99216 1.00195 1.20970 0.94835 0.95701 0.99796 1.17118 0.87222 0.94583 1.00664 1.45507 1.04106 1.66322 1.14331 1.22201 0.97508 1.00407 0.81820 1.22610 0.94270 1.03411 0.96495 1.22326 0.97168 1.05365 0.94542 1.21145 0.84791 0.76424 0.87517 1.90766 1.85521 1.45450 1.17852 0.93672 0.90073 0.93456 0.94717 0.93599 0.92741 0.76350 0.83107 0.85472 0.85780 0.85951 0.90628 0.89975 0.89858 0.88816 0.87856 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.61 -13.03 2.86 -188.74 -0.54 -13.57 16 3 C 0.26 6.74 5.16 -5.20 -0.03 6.71 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 C 0.70 15.06 8.13 -86.91 -0.71 14.36 16 13 O -0.57 -14.28 13.34 5.29 0.07 -14.21 16 14 N -0.69 -12.14 5.05 -14.08 -0.07 -12.21 16 15 C 0.19 3.25 6.33 -83.46 -0.53 2.72 16 16 C -0.12 -1.99 8.70 -39.42 -0.34 -2.33 16 17 C -0.09 -1.26 10.04 -39.57 -0.40 -1.66 16 18 C -0.14 -1.67 10.04 -39.57 -0.40 -2.07 16 19 C -0.09 -1.17 9.96 -39.42 -0.39 -1.56 16 20 C 0.10 1.38 5.40 -83.47 -0.45 0.93 16 21 N -0.57 -6.76 2.43 -112.11 -0.27 -7.04 16 22 C 0.10 0.85 7.28 -3.12 -0.02 0.83 16 23 C -0.13 -0.69 7.18 -25.10 -0.18 -0.88 16 24 C -0.15 -1.12 6.86 -26.74 -0.18 -1.31 16 25 C 0.51 6.34 7.96 -10.87 -0.09 6.26 16 26 O -0.52 -8.76 17.71 5.54 0.10 -8.66 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.05 0.65 6.30 -51.93 -0.33 0.33 16 30 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.40 6.25 6.18 -40.82 -0.25 6.00 16 34 H 0.15 2.99 6.19 -52.49 -0.33 2.66 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -35.70 363.17 -8.95 -44.65 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.90 Total: 3.94 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -3.52 Total: 10.36 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.15 Total: -58.45 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.70 -8.95 -44.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176545933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.829 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds