Wall clock time and date at job start Tue Mar 31 2020 11:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00441 * 2 1 4 4 C 1.50696 * 109.47094 * 270.00071 * 3 2 1 5 5 H 1.08003 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00277 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99766 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00085 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47046 * 119.99860 * 8 6 4 11 11 H 1.48501 * 109.47101 * 239.99849 * 8 6 4 12 12 C 1.34781 * 119.99736 * 179.97438 * 2 1 3 13 13 O 1.21586 * 120.00178 * 180.02562 * 12 2 1 14 14 N 1.34783 * 119.99666 * 0.02562 * 12 2 1 15 15 C 1.40113 * 119.99429 * 184.44089 * 14 12 2 16 16 C 1.38697 * 120.09592 * 325.32370 * 15 14 12 17 17 C 1.38208 * 119.99675 * 180.26388 * 16 15 14 18 18 C 1.38297 * 120.19640 * 359.73731 * 17 16 15 19 19 C 1.38207 * 120.19111 * 359.97438 * 18 17 16 20 20 C 1.38706 * 120.00267 * 0.02562 * 19 18 17 21 21 N 1.40086 * 120.09903 * 179.97438 * 20 19 18 22 22 C 1.46768 * 124.34550 * 89.99968 * 21 20 19 23 23 C 1.54475 * 105.47145 * 197.01768 * 22 21 20 24 24 C 1.54633 * 101.76578 * 334.58426 * 23 22 21 25 25 C 1.34408 * 124.35226 * 270.00023 * 21 20 19 26 26 O 1.21297 * 124.94442 * 359.62379 * 25 21 20 27 27 H 1.09004 * 109.46967 * 270.00406 * 1 2 3 28 28 H 1.09006 * 109.47048 * 30.00033 * 1 2 3 29 29 H 1.08998 * 109.47830 * 149.99989 * 1 2 3 30 30 H 1.09003 * 109.47461 * 29.99971 * 3 2 1 31 31 H 1.09001 * 109.47367 * 149.99731 * 3 2 1 32 32 H 0.96996 * 119.99549 * 180.02562 * 7 6 4 33 33 H 0.96992 * 120.00106 * 4.42964 * 14 12 2 34 34 H 1.08000 * 120.00346 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.90446 * 179.77085 * 17 16 15 36 36 H 1.08000 * 119.90738 * 180.02562 * 18 17 16 37 37 H 1.08003 * 120.00256 * 179.97438 * 19 18 17 38 38 H 1.08998 * 110.24313 * 78.01490 * 22 21 20 39 39 H 1.09001 * 110.24724 * 316.01366 * 22 21 20 40 40 H 1.08997 * 110.97313 * 92.70389 * 23 22 21 41 41 H 1.08999 * 110.97147 * 216.46792 * 23 22 21 42 42 H 1.08997 * 110.48877 * 143.47936 * 24 23 22 43 43 H 1.09002 * 110.48407 * 265.98926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.5545 3.6174 -0.6732 8 14 3.4390 3.4161 -3.4339 9 1 2.8619 2.4156 -4.3673 10 1 2.8020 4.7370 -3.6676 11 1 4.9017 3.5237 -3.6669 12 6 2.1388 -1.1673 0.0005 13 8 3.3547 -1.1674 0.0010 14 7 1.4648 -2.3345 0.0005 15 6 2.1622 -3.5460 0.0950 16 6 3.4077 -3.6799 -0.5003 17 6 4.0914 -4.8776 -0.4104 18 6 3.5398 -5.9436 0.2767 19 6 2.3018 -5.8171 0.8779 20 6 1.6086 -4.6187 0.7928 21 7 0.3534 -4.4884 1.4011 22 6 0.1449 -4.0305 2.7798 23 6 -1.2949 -4.4568 3.1423 24 6 -1.9642 -4.5230 1.7499 25 6 -0.8146 -4.7667 0.7971 26 8 -0.9302 -5.1571 -0.3455 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3635 -0.8899 -0.5138 30 1 1.6086 2.0284 0.5138 31 1 3.1499 1.1383 0.5139 32 1 4.0313 4.4432 -0.8505 33 1 0.4971 -2.3356 -0.0647 34 1 3.8416 -2.8494 -1.0373 35 1 5.0595 -4.9814 -0.8777 36 1 4.0783 -6.8773 0.3443 37 1 1.8737 -6.6516 1.4134 38 1 0.2429 -2.9464 2.8360 39 1 0.8598 -4.5098 3.4487 40 1 -1.3026 -5.4337 3.6256 41 1 -1.7767 -3.7082 3.7713 42 1 -2.6761 -5.3473 1.7076 43 1 -2.4598 -3.5799 1.5196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176545933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:01 Heat of formation + Delta-G solvation = -36.812147 kcal Electronic energy + Delta-G solvation = -26982.709794 eV Core-core repulsion = 23220.653436 eV Total energy + Delta-G solvation = -3762.056358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22101 -41.19501 -39.54027 -37.48323 -36.78908 -35.91162 -34.66212 -33.89017 -31.08402 -30.09469 -29.28819 -28.51224 -27.44348 -25.30071 -24.20294 -23.41450 -22.66899 -21.12403 -20.78044 -19.37347 -18.73141 -18.50463 -18.17878 -17.54539 -16.92085 -16.76483 -16.37092 -16.19385 -15.79020 -15.48808 -15.00548 -14.92646 -14.75752 -14.63628 -14.50141 -14.04351 -13.91636 -13.66352 -13.53948 -13.52608 -13.23429 -12.91165 -12.76502 -12.56588 -12.54017 -12.34723 -12.23441 -11.85830 -11.75408 -11.50225 -11.10223 -10.98433 -10.66229 -9.99444 -9.84011 -9.63548 -9.07905 -8.24496 -6.39047 0.15916 0.33971 1.34470 1.36949 1.44187 1.48114 1.60325 1.92589 2.07906 2.36728 2.72068 2.93450 3.05463 3.46421 3.68740 3.87836 4.04268 4.10111 4.14552 4.16961 4.32611 4.41869 4.45024 4.54086 4.63495 4.66553 4.72951 4.81270 4.88498 4.89866 5.11277 5.12884 5.20534 5.21876 5.31133 5.44894 5.48654 5.56450 5.59112 5.72995 5.94472 5.98696 6.02967 6.09159 6.68855 6.90584 7.09210 7.27441 7.51920 8.82252 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.003833 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.439840 B = 7303.566519 C = 8263.085417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.618 5.618 3 C 0.277 3.723 4 C -0.545 4.545 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.924 5.924 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.266 1.266 11 H -0.280 1.280 12 C 0.695 3.305 13 O -0.613 6.613 14 N -0.675 5.675 15 C 0.155 3.845 16 C -0.145 4.145 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.093 4.093 20 C 0.096 3.904 21 N -0.573 5.573 22 C 0.094 3.906 23 C -0.112 4.112 24 C -0.145 4.145 25 C 0.502 3.498 26 O -0.576 6.576 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.003 0.997 32 H 0.268 0.732 33 H 0.408 0.592 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 -19.839 10.379 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.353 5.353 3 C 0.156 3.844 4 C -0.584 4.584 5 H 0.065 0.935 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.191 1.191 11 H -0.206 1.206 12 C 0.397 3.603 13 O -0.493 6.493 14 N -0.325 5.325 15 C 0.058 3.942 16 C -0.166 4.166 17 C -0.115 4.115 18 C -0.142 4.142 19 C -0.113 4.113 20 C 0.003 3.997 21 N -0.304 5.304 22 C -0.027 4.027 23 C -0.149 4.149 24 C -0.185 4.185 25 C 0.293 3.707 26 O -0.455 6.455 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.247 0.753 34 H 0.130 0.870 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.522 -19.730 9.844 24.432 hybrid contribution 0.231 0.965 -1.202 1.559 sum -10.291 -18.765 8.643 23.081 Atomic orbital electron populations 1.21849 0.78235 1.03285 1.02779 1.47376 1.07807 1.04894 1.75179 1.18732 0.91010 0.78622 0.96019 1.21710 1.37045 1.06569 0.93039 0.93470 1.25774 0.94788 0.96314 1.01785 1.70037 1.38786 1.14806 1.32777 0.85401 0.77953 0.78364 0.79263 1.19751 1.19123 1.20615 1.16053 0.85112 0.80905 0.78232 1.90846 1.13411 1.86310 1.58687 1.42570 1.10134 1.02754 1.76999 1.18078 0.93905 0.85095 0.97108 1.21326 0.95265 0.99181 1.00853 1.21407 1.00351 0.91530 0.98173 1.21382 0.95261 0.99814 0.97765 1.21387 0.94878 0.95633 0.99363 1.17323 0.88284 0.94210 0.99872 1.45774 1.03185 1.65842 1.15566 1.22469 1.00085 1.00111 0.80012 1.22644 0.91540 1.05155 0.95597 1.22400 0.95430 1.06655 0.94019 1.22092 0.86044 0.75124 0.87400 1.90732 1.86378 1.47979 1.20371 0.90295 0.90322 0.91388 0.94849 0.97916 0.92276 0.75344 0.87033 0.83487 0.81733 0.83079 0.91407 0.88997 0.88122 0.86231 0.86291 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 10.24 127.77 1.31 3.83 16 2 N -0.62 -27.33 2.86 -869.31 -2.48 -29.81 16 3 C 0.28 15.09 5.16 85.63 0.44 15.53 16 4 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.01 0.74 5.46 84.66 0.46 1.20 16 7 N -0.92 -55.70 13.29 21.45 0.28 -55.42 16 8 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.70 31.62 8.13 179.05 1.45 33.07 16 13 O -0.61 -33.31 13.34 -3.99 -0.05 -33.36 16 14 N -0.68 -24.56 5.05 -316.73 -1.60 -26.16 16 15 C 0.16 5.42 6.33 38.21 0.24 5.66 16 16 C -0.15 -5.28 8.70 22.37 0.19 -5.08 16 17 C -0.10 -2.60 10.04 22.28 0.22 -2.38 16 18 C -0.12 -2.63 10.04 22.28 0.22 -2.41 16 19 C -0.09 -2.12 9.96 22.37 0.22 -1.90 16 20 C 0.10 2.68 5.40 38.22 0.21 2.88 16 21 N -0.57 -12.69 2.43 -627.18 -1.53 -14.21 16 22 C 0.09 1.33 7.28 86.83 0.63 1.96 16 23 C -0.11 -0.73 7.18 31.65 0.23 -0.51 16 24 C -0.15 -1.64 6.86 30.59 0.21 -1.43 16 25 C 0.50 11.66 7.96 87.90 0.70 12.36 16 26 O -0.58 -19.18 17.71 -3.08 -0.05 -19.24 16 27 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.08 2.50 8.07 -2.38 -0.02 2.48 16 29 H 0.07 1.82 6.30 -2.39 -0.02 1.81 16 30 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 31 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 32 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.41 12.91 6.18 -92.71 -0.57 12.33 16 34 H 0.11 4.90 6.19 -2.91 -0.02 4.88 16 35 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 36 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -83.79 363.17 4.04 -79.75 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.46 Total: 19.72 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 6.99 Total: 31.10 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.32 Total: -125.60 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.11 Total: -52.60 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -83.79 4.04 -79.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176545933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.934 kcal (2) G-P(sol) polarization free energy of solvation -83.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds