Wall clock time and date at job start Tue Mar 31 2020 11:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00407 * 2 1 4 4 C 1.50701 * 109.46986 * 270.00134 * 3 2 1 5 5 H 1.08003 * 119.99827 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00024 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99756 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00076 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46978 * 90.00063 * 8 6 4 10 10 H 1.48501 * 109.46734 * 209.99872 * 8 6 4 11 11 H 1.48498 * 109.46925 * 329.99919 * 8 6 4 12 12 C 1.34779 * 120.00099 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00436 * 179.97438 * 12 2 1 14 14 N 1.34777 * 119.99829 * 0.02562 * 12 2 1 15 15 C 1.39977 * 119.99951 * 185.29649 * 14 12 2 16 16 C 1.38982 * 120.00002 * 213.34289 * 15 14 12 17 17 C 1.38209 * 120.22696 * 179.97438 * 16 15 14 18 18 C 1.38024 * 120.22353 * 0.02562 * 17 16 15 19 19 C 1.39577 * 119.98891 * 0.23712 * 18 17 16 20 20 C 1.47865 * 120.10772 * 179.72414 * 19 18 17 21 21 O 1.21557 * 119.99951 * 180.02562 * 20 19 18 22 22 N 1.34771 * 120.00012 * 359.97438 * 20 19 18 23 23 C 1.46504 * 120.00010 * 180.02562 * 22 20 19 24 24 C 1.53001 * 117.49889 * 223.62103 * 23 22 20 25 25 C 1.52995 * 117.50090 * 154.99831 * 23 22 20 26 26 C 1.38595 * 119.99937 * 33.32221 * 15 14 12 27 27 H 1.08997 * 109.46767 * 270.00100 * 1 2 3 28 28 H 1.08997 * 109.46754 * 29.99882 * 1 2 3 29 29 H 1.08998 * 109.47417 * 150.00209 * 1 2 3 30 30 H 1.09004 * 109.46719 * 30.00007 * 3 2 1 31 31 H 1.09000 * 109.47480 * 149.99906 * 3 2 1 32 32 H 0.97005 * 119.99805 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99939 * 5.29236 * 14 12 2 34 34 H 1.08004 * 119.88847 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.89099 * 180.02562 * 17 16 15 36 36 H 1.08001 * 120.00691 * 179.97438 * 18 17 16 37 37 H 0.96996 * 120.00273 * 359.97438 * 22 20 19 38 38 H 1.08997 * 115.54642 * 9.33002 * 23 22 20 39 39 H 1.09001 * 117.50062 * 0.02562 * 24 23 22 40 40 H 1.08999 * 117.49693 * 145.01858 * 24 23 22 41 41 H 1.09003 * 117.50266 * 214.98341 * 25 23 22 42 42 H 1.09004 * 117.49759 * 359.97438 * 25 23 22 43 43 H 1.08001 * 120.10991 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6184 -0.6732 8 14 3.4368 3.4175 -3.4340 9 1 2.3065 4.2601 -3.9002 10 1 4.6969 4.2007 -3.4967 11 1 3.5541 2.2205 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1673 0.0001 14 7 1.4650 -2.3344 0.0005 15 6 2.1603 -3.5440 0.1130 16 6 1.6898 -4.6791 -0.5366 17 6 2.3729 -5.8757 -0.4292 18 6 3.5269 -5.9518 0.3243 19 6 4.0046 -4.8189 0.9849 20 6 5.2372 -4.8989 1.7978 21 8 5.6513 -3.9111 2.3727 22 7 5.9010 -6.0672 1.9021 23 6 7.1219 -6.1466 2.7079 24 6 8.3076 -6.9144 2.1202 25 6 7.5053 -7.5141 3.2766 26 6 3.3183 -3.6097 0.8717 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5139 31 1 3.1500 1.1384 0.5138 32 1 4.0289 4.4447 -0.8505 33 1 0.4981 -2.3362 -0.0773 34 1 0.7872 -4.6258 -1.1273 35 1 2.0026 -6.7543 -0.9366 36 1 4.0577 -6.8888 0.4061 37 1 5.5700 -6.8556 1.4443 38 1 7.3417 -5.2691 3.3160 39 1 8.1795 -7.3601 1.1337 40 1 9.3078 -6.5420 2.3414 41 1 7.9777 -7.5364 4.2587 42 1 6.8489 -8.3548 3.0516 43 1 3.6855 -2.7288 1.3772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176546348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:51 Heat of formation + Delta-G solvation = 5.336586 kcal Electronic energy + Delta-G solvation = -25642.102074 eV Core-core repulsion = 21881.873423 eV Total energy + Delta-G solvation = -3760.228652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56538 -39.74551 -38.24203 -37.10786 -35.06128 -34.44727 -33.04300 -32.49979 -30.99829 -29.49303 -27.63948 -25.81454 -24.56730 -23.45557 -22.70923 -22.03961 -21.89098 -20.64240 -19.47858 -18.41589 -17.30104 -16.84270 -16.52613 -16.17428 -16.03751 -15.28035 -14.94232 -14.83472 -14.68494 -14.31538 -14.18458 -13.86885 -13.64532 -13.17882 -12.95155 -12.84413 -12.46018 -12.19027 -11.98395 -11.92225 -11.86367 -11.60271 -11.50442 -11.18690 -10.91771 -10.82496 -10.56664 -10.25023 -10.13335 -9.95386 -9.61778 -9.35340 -9.04907 -8.84397 -8.41580 -8.06939 -7.62472 -6.02228 -4.07005 0.83288 1.39404 2.76959 2.83888 3.14842 3.31541 3.38670 3.43597 3.56173 3.76552 4.04787 4.38406 4.45966 4.50026 4.58754 4.66117 4.67583 4.79023 4.99060 5.14421 5.28624 5.31762 5.39192 5.46864 5.49520 5.54267 5.67942 5.74264 5.83231 5.85119 6.09146 6.22948 6.25773 6.30595 6.39317 6.57720 6.78354 7.11844 7.32970 7.34574 7.49262 7.64594 7.95021 8.14662 8.24149 8.53848 8.93150 9.20746 9.58087 11.05784 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002973 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.627670 B = 9414.642507 C =10485.322985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.694 3.306 13 O -0.561 6.561 14 N -0.697 5.697 15 C 0.179 3.821 16 C -0.132 4.132 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.118 4.118 20 C 0.564 3.436 21 O -0.522 6.522 22 N -0.703 5.703 23 C 0.082 3.918 24 C -0.194 4.194 25 C -0.191 4.191 26 C -0.061 4.061 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.400 0.600 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -24.411 4.485 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.346 5.346 3 C 0.139 3.861 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.396 3.604 13 O -0.436 6.436 14 N -0.346 5.346 15 C 0.082 3.918 16 C -0.153 4.153 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.122 4.122 20 C 0.352 3.648 21 O -0.397 6.397 22 N -0.354 5.354 23 C -0.024 4.024 24 C -0.233 4.233 25 C -0.229 4.229 26 C -0.082 4.082 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.236 0.764 38 H 0.157 0.843 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.675 -23.313 4.963 23.894 hybrid contribution -0.524 -0.073 -1.435 1.530 sum -2.198 -23.386 3.528 23.753 Atomic orbital electron populations 1.21599 0.81629 1.02341 1.00485 1.47522 1.05759 1.06310 1.75002 1.19286 0.92473 0.76743 0.97563 1.21437 1.36642 1.06229 0.92309 0.92518 1.24931 0.95317 0.96409 0.97447 1.69933 1.38364 1.14291 1.30706 0.86488 0.77670 0.78551 0.84662 1.20673 1.21052 1.19934 1.15965 0.85642 0.80091 0.78722 1.90956 1.11172 1.85358 1.56124 1.43044 1.10082 1.03671 1.77843 1.17456 0.93757 0.85340 0.95231 1.21055 1.01946 0.92525 0.99783 1.20757 0.95142 0.97332 0.99235 1.21080 0.97104 0.97049 0.98487 1.19638 0.96373 0.94695 1.01446 1.18312 0.83377 0.82598 0.80508 1.90824 1.67691 1.35263 1.45935 1.45260 1.26151 1.12287 1.51725 1.21601 0.85712 0.97065 0.97999 1.23432 0.97123 1.04484 0.98260 1.23379 1.03794 0.96776 0.98937 1.21406 0.93578 0.97729 0.95499 0.93529 0.90216 0.93224 0.94648 0.93521 0.92678 0.75972 0.85391 0.85271 0.86130 0.76436 0.84284 0.88469 0.87901 0.87846 0.88526 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.25 59.85 0.61 1.90 16 2 N -0.61 -13.12 2.86 -188.74 -0.54 -13.66 16 3 C 0.26 6.87 5.16 -5.19 -0.03 6.84 16 4 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 8 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.69 15.08 8.01 -86.92 -0.70 14.38 16 13 O -0.56 -14.85 13.61 5.29 0.07 -14.77 16 14 N -0.70 -11.23 5.22 -14.25 -0.07 -11.31 16 15 C 0.18 2.76 6.28 -83.73 -0.53 2.24 16 16 C -0.13 -1.51 9.95 -39.32 -0.39 -1.90 16 17 C -0.11 -1.03 10.02 -39.67 -0.40 -1.42 16 18 C -0.12 -1.22 9.54 -39.16 -0.37 -1.59 16 19 C -0.12 -1.70 5.87 -104.99 -0.62 -2.32 16 20 C 0.56 8.55 7.77 -12.32 -0.10 8.45 16 21 O -0.52 -10.27 15.91 5.32 0.08 -10.18 16 22 N -0.70 -7.50 5.52 -54.74 -0.30 -7.80 16 23 C 0.08 0.81 6.43 -67.93 -0.44 0.38 16 24 C -0.19 -1.47 10.46 -26.73 -0.28 -1.75 16 25 C -0.19 -1.29 10.45 -26.74 -0.28 -1.57 16 26 C -0.06 -1.06 8.20 -38.98 -0.32 -1.38 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.05 0.59 6.29 -51.93 -0.33 0.26 16 30 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.05 1.41 7.42 -51.93 -0.39 1.02 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.40 4.95 6.51 -40.82 -0.27 4.68 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.12 0.82 6.40 -52.49 -0.34 0.48 16 37 H 0.40 2.98 6.86 -40.82 -0.28 2.70 16 38 H 0.14 1.62 7.40 -51.93 -0.38 1.24 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.15 3.29 6.00 -52.49 -0.32 2.98 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -37.42 366.47 -9.40 -46.83 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.64 Total: 5.98 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -4.25 Total: 8.43 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.18 Total: -59.01 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.16 Total: -24.96 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.42 -9.40 -46.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176546348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.164 kcal (2) G-P(sol) polarization free energy of solvation -37.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds