Wall clock time and date at job start Tue Mar 31 2020 11:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00407 * 2 1 4 4 C 1.50701 * 109.46986 * 270.00134 * 3 2 1 5 5 H 1.08003 * 119.99827 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00024 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99756 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00076 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46978 * 90.00063 * 8 6 4 10 10 H 1.48501 * 109.46734 * 209.99872 * 8 6 4 11 11 H 1.48498 * 109.46925 * 329.99919 * 8 6 4 12 12 C 1.34779 * 120.00099 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00436 * 179.97438 * 12 2 1 14 14 N 1.34777 * 119.99829 * 0.02562 * 12 2 1 15 15 C 1.39977 * 119.99951 * 185.29649 * 14 12 2 16 16 C 1.38982 * 120.00002 * 213.34289 * 15 14 12 17 17 C 1.38209 * 120.22696 * 179.97438 * 16 15 14 18 18 C 1.38024 * 120.22353 * 0.02562 * 17 16 15 19 19 C 1.39577 * 119.98891 * 0.23712 * 18 17 16 20 20 C 1.47865 * 120.10772 * 179.72414 * 19 18 17 21 21 O 1.21557 * 119.99951 * 180.02562 * 20 19 18 22 22 N 1.34771 * 120.00012 * 359.97438 * 20 19 18 23 23 C 1.46504 * 120.00010 * 180.02562 * 22 20 19 24 24 C 1.53001 * 117.49889 * 223.62103 * 23 22 20 25 25 C 1.52995 * 117.50090 * 154.99831 * 23 22 20 26 26 C 1.38595 * 119.99937 * 33.32221 * 15 14 12 27 27 H 1.08997 * 109.46767 * 270.00100 * 1 2 3 28 28 H 1.08997 * 109.46754 * 29.99882 * 1 2 3 29 29 H 1.08998 * 109.47417 * 150.00209 * 1 2 3 30 30 H 1.09004 * 109.46719 * 30.00007 * 3 2 1 31 31 H 1.09000 * 109.47480 * 149.99906 * 3 2 1 32 32 H 0.97005 * 119.99805 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99939 * 5.29236 * 14 12 2 34 34 H 1.08004 * 119.88847 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.89099 * 180.02562 * 17 16 15 36 36 H 1.08001 * 120.00691 * 179.97438 * 18 17 16 37 37 H 0.96996 * 120.00273 * 359.97438 * 22 20 19 38 38 H 1.08997 * 115.54642 * 9.33002 * 23 22 20 39 39 H 1.09001 * 117.50062 * 0.02562 * 24 23 22 40 40 H 1.08999 * 117.49693 * 145.01858 * 24 23 22 41 41 H 1.09003 * 117.50266 * 214.98341 * 25 23 22 42 42 H 1.09004 * 117.49759 * 359.97438 * 25 23 22 43 43 H 1.08001 * 120.10991 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6184 -0.6732 8 14 3.4368 3.4175 -3.4340 9 1 2.3065 4.2601 -3.9002 10 1 4.6969 4.2007 -3.4967 11 1 3.5541 2.2205 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1673 0.0001 14 7 1.4650 -2.3344 0.0005 15 6 2.1603 -3.5440 0.1130 16 6 1.6898 -4.6791 -0.5366 17 6 2.3729 -5.8757 -0.4292 18 6 3.5269 -5.9518 0.3243 19 6 4.0046 -4.8189 0.9849 20 6 5.2372 -4.8989 1.7978 21 8 5.6513 -3.9111 2.3727 22 7 5.9010 -6.0672 1.9021 23 6 7.1219 -6.1466 2.7079 24 6 8.3076 -6.9144 2.1202 25 6 7.5053 -7.5141 3.2766 26 6 3.3183 -3.6097 0.8717 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5139 31 1 3.1500 1.1384 0.5138 32 1 4.0289 4.4447 -0.8505 33 1 0.4981 -2.3362 -0.0773 34 1 0.7872 -4.6258 -1.1273 35 1 2.0026 -6.7543 -0.9366 36 1 4.0577 -6.8888 0.4061 37 1 5.5700 -6.8556 1.4443 38 1 7.3417 -5.2691 3.3160 39 1 8.1795 -7.3601 1.1337 40 1 9.3078 -6.5420 2.3414 41 1 7.9777 -7.5364 4.2587 42 1 6.8489 -8.3548 3.0516 43 1 3.6855 -2.7288 1.3772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176546348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:50 Heat of formation + Delta-G solvation = -22.467706 kcal Electronic energy + Delta-G solvation = -25643.307759 eV Core-core repulsion = 21881.873423 eV Total energy + Delta-G solvation = -3761.434336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84378 -41.03420 -39.39089 -38.02804 -36.76472 -35.93236 -34.69406 -33.98440 -31.98803 -30.81231 -29.42901 -27.39169 -25.60783 -25.25704 -23.38146 -23.27961 -22.76151 -21.73787 -20.98343 -19.62053 -18.77363 -18.69568 -17.78981 -17.49102 -16.99586 -16.69883 -16.62044 -16.07418 -15.90533 -15.70119 -15.32336 -15.06490 -14.87153 -14.69265 -14.30841 -13.97860 -13.71031 -13.67767 -13.49324 -13.19786 -12.86604 -12.79615 -12.63652 -12.56284 -12.51340 -12.37759 -12.21669 -11.78346 -11.53686 -11.50503 -11.13842 -11.04559 -10.65756 -10.07112 -9.74064 -9.60733 -9.06555 -8.23585 -6.39087 -0.19556 0.35555 1.34293 1.38555 1.48341 1.63623 1.72222 1.95003 2.17385 2.37747 2.84458 3.01452 3.02265 3.06743 3.59767 3.76034 3.93992 4.03836 4.05586 4.11995 4.22490 4.26212 4.41164 4.53046 4.62868 4.73982 4.75463 4.80274 4.90788 4.94454 5.00966 5.16048 5.20125 5.27511 5.30824 5.33912 5.42853 5.50174 5.53019 5.75391 5.97441 6.02851 6.05346 6.43333 6.69517 7.01157 7.12028 7.28036 7.58874 8.83398 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002973 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.627670 B = 9414.642507 C =10485.322985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.274 3.726 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.689 3.311 13 O -0.622 6.622 14 N -0.674 5.674 15 C 0.146 3.854 16 C -0.112 4.112 17 C -0.090 4.090 18 C -0.094 4.094 19 C -0.136 4.136 20 C 0.555 3.445 21 O -0.589 6.589 22 N -0.677 5.677 23 C 0.038 3.962 24 C -0.184 4.184 25 C -0.159 4.159 26 C -0.100 4.100 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.031 0.969 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.423 0.577 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.167 0.833 37 H 0.419 0.581 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 -29.001 1.970 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.354 5.354 3 C 0.153 3.847 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.795 3.205 9 H -0.183 1.183 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.390 3.610 13 O -0.502 6.502 14 N -0.326 5.326 15 C 0.051 3.949 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.140 4.140 20 C 0.344 3.656 21 O -0.470 6.470 22 N -0.329 5.329 23 C -0.067 4.067 24 C -0.222 4.222 25 C -0.197 4.197 26 C -0.122 4.122 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.264 0.736 34 H 0.183 0.817 35 H 0.201 0.799 36 H 0.184 0.816 37 H 0.258 0.742 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.743 -28.019 2.446 28.374 hybrid contribution 0.125 1.173 -0.581 1.315 sum -3.619 -26.846 1.866 27.153 Atomic orbital electron populations 1.21926 0.77603 1.04230 1.02671 1.47376 1.08155 1.04730 1.75168 1.18713 0.90782 0.79022 0.96212 1.21694 1.36991 1.06469 0.92912 0.92807 1.25911 0.94819 0.96440 1.02225 1.70064 1.38947 1.14782 1.33156 0.85364 0.78162 0.78162 0.78792 1.18347 1.20739 1.19879 1.16194 0.85077 0.81424 0.78284 1.90919 1.14185 1.86481 1.58602 1.42591 1.10765 1.02278 1.76967 1.17738 0.93973 0.86147 0.97066 1.21508 1.02633 0.91183 0.97961 1.21412 0.93685 0.98149 0.97589 1.21594 0.97081 0.96818 0.95854 1.19698 0.96254 0.95292 1.02761 1.18666 0.83896 0.82939 0.80106 1.90787 1.69503 1.37785 1.48891 1.45025 1.25650 1.11385 1.50817 1.21667 0.86831 0.98243 0.99994 1.23523 0.96205 1.03103 0.99400 1.23489 1.02492 0.94606 0.99151 1.21113 0.96008 0.97265 0.97822 0.91150 0.90575 0.89072 0.95093 0.98845 0.92365 0.73601 0.81666 0.79873 0.81555 0.74181 0.87527 0.87115 0.87616 0.86837 0.86218 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.25 127.77 1.31 3.63 16 2 N -0.62 -27.92 2.86 -869.31 -2.48 -30.41 16 3 C 0.27 15.62 5.16 85.63 0.44 16.06 16 4 C -0.54 -32.46 9.39 25.60 0.24 -32.22 16 5 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 6 C 0.00 0.29 5.46 84.65 0.46 0.75 16 7 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 8 Si 0.97 46.39 29.54 68.60 2.03 48.41 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 12 C 0.69 31.85 8.01 179.05 1.43 33.28 16 13 O -0.62 -36.33 13.61 -4.00 -0.05 -36.39 16 14 N -0.67 -21.99 5.22 -317.26 -1.66 -23.64 16 15 C 0.15 4.52 6.28 38.10 0.24 4.75 16 16 C -0.11 -2.13 9.95 22.44 0.22 -1.90 16 17 C -0.09 -1.23 10.02 22.21 0.22 -1.01 16 18 C -0.09 -1.60 9.54 22.54 0.22 -1.39 16 19 C -0.14 -4.04 5.87 -20.10 -0.12 -4.16 16 20 C 0.55 18.05 7.77 86.79 0.67 18.72 16 21 O -0.59 -26.32 15.91 -3.90 -0.06 -26.38 16 22 N -0.68 -14.20 5.52 -445.39 -2.46 -16.66 16 23 C 0.04 0.77 6.43 44.99 0.29 1.06 16 24 C -0.18 -2.48 10.46 30.59 0.32 -2.16 16 25 C -0.16 -1.77 10.45 30.59 0.32 -1.45 16 26 C -0.10 -3.81 8.20 22.66 0.19 -3.63 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 29 H 0.09 1.93 6.29 -2.39 -0.02 1.92 16 30 H 0.03 1.76 8.07 -2.38 -0.02 1.74 16 31 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 32 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 33 H 0.42 9.63 6.51 -92.71 -0.60 9.03 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.17 1.24 6.40 -2.91 -0.02 1.22 16 37 H 0.42 5.00 6.86 -92.71 -0.64 4.36 16 38 H 0.11 2.83 7.40 -2.39 -0.02 2.81 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 4.64 6.00 -2.91 -0.02 4.62 16 Total: -1.00 -95.75 366.47 1.88 -93.88 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.18 Total: 18.92 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 6.46 Total: 30.37 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -6.31 Total: -128.81 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: -0.12 Total: -62.77 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -95.75 1.88 -93.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176546348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.408 kcal (2) G-P(sol) polarization free energy of solvation -95.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds