Wall clock time and date at job start Tue Mar 31 2020 11:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46502 * 119.99767 * 2 1 4 4 C 1.50703 * 109.46643 * 269.99539 * 3 2 1 5 5 H 1.08001 * 120.00139 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99871 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99727 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47415 * 60.00472 * 8 6 4 10 10 H 1.48501 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47226 * 299.99791 * 8 6 4 12 12 C 1.34773 * 120.00031 * 179.97438 * 2 1 3 13 13 O 1.21573 * 120.00300 * 180.02562 * 12 2 1 14 14 N 1.34781 * 119.99723 * 0.02562 * 12 2 1 15 15 C 1.39434 * 119.99691 * 185.29808 * 14 12 2 16 16 C 1.39136 * 119.92427 * 213.42536 * 15 14 12 17 17 C 1.37659 * 120.07446 * 179.74720 * 16 15 14 18 18 C 1.39760 * 119.92486 * 0.24990 * 17 16 15 19 19 C 1.47576 * 120.07412 * 179.97438 * 18 17 16 20 20 O 1.21589 * 120.00088 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99950 * 180.02562 * 19 18 17 22 22 C 1.46504 * 120.00057 * 180.02562 * 21 19 18 23 23 C 1.52995 * 117.49832 * 223.74786 * 22 21 19 24 24 C 1.52997 * 117.49894 * 155.08611 * 22 21 19 25 25 C 1.39764 * 119.85093 * 0.02562 * 18 17 16 26 26 C 1.37656 * 119.92375 * 359.97438 * 25 18 17 27 27 H 1.09000 * 109.46925 * 270.00458 * 1 2 3 28 28 H 1.09002 * 109.46742 * 30.00285 * 1 2 3 29 29 H 1.08993 * 109.47022 * 150.00279 * 1 2 3 30 30 H 1.08999 * 109.47337 * 29.99525 * 3 2 1 31 31 H 1.08997 * 109.47179 * 150.00266 * 3 2 1 32 32 H 0.96997 * 119.99814 * 179.97438 * 7 6 4 33 33 H 0.97002 * 120.00151 * 5.29290 * 14 12 2 34 34 H 1.07996 * 119.96344 * 0.02562 * 16 15 14 35 35 H 1.07997 * 120.04123 * 180.27587 * 17 16 15 36 36 H 0.96996 * 120.00408 * 0.02562 * 21 19 18 37 37 H 1.09001 * 115.54755 * 9.41295 * 22 21 19 38 38 H 1.08998 * 117.50154 * 359.97438 * 23 22 21 39 39 H 1.09006 * 117.50213 * 145.01925 * 23 22 21 40 40 H 1.09002 * 117.49823 * 214.97507 * 24 22 21 41 41 H 1.08998 * 117.49937 * 359.97438 * 24 22 21 42 42 H 1.07996 * 120.03461 * 180.02562 * 25 18 17 43 43 H 1.07998 * 119.96112 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1270 2.8774 -1.6729 7 7 3.5551 3.6171 -0.6733 8 14 3.4377 3.4168 -3.4341 9 1 2.1400 3.5952 -4.1335 10 1 4.1814 4.7022 -3.4342 11 1 4.2395 2.3817 -4.1347 12 6 2.1390 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1577 -3.5393 0.1126 16 6 1.6862 -4.6742 -0.5397 17 6 2.3704 -5.8641 -0.4355 18 6 3.5371 -5.9327 0.3309 19 6 4.2730 -7.2068 0.4454 20 8 3.8641 -8.1985 -0.1270 21 7 5.3977 -7.2713 1.1853 22 6 6.1285 -8.5360 1.2985 23 6 6.6336 -8.9382 2.6855 24 6 7.6228 -8.4621 1.6187 25 6 4.0048 -4.7921 0.9895 26 6 3.3157 -3.6054 0.8810 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5137 31 1 3.1500 1.1385 0.5138 32 1 4.0325 4.4426 -0.8506 33 1 0.4981 -2.3362 -0.0773 34 1 0.7848 -4.6205 -1.1322 35 1 2.0064 -6.7437 -0.9456 36 1 5.7233 -6.4804 1.6429 37 1 5.7949 -9.3328 0.6338 38 1 6.4226 -8.2617 3.5138 39 1 6.6329 -9.9997 2.9332 40 1 8.2723 -9.2107 1.1649 41 1 8.0622 -7.4727 1.7446 42 1 4.9063 -4.8416 1.5822 43 1 3.6768 -2.7236 1.3894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176546694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:53 Heat of formation + Delta-G solvation = 2.238610 kcal Electronic energy + Delta-G solvation = -25275.106025 eV Core-core repulsion = 21514.743035 eV Total energy + Delta-G solvation = -3760.362990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61778 -39.90975 -38.26775 -37.17156 -35.11098 -34.53538 -33.15784 -32.58224 -30.91380 -29.71659 -27.77046 -25.99229 -24.34464 -22.92822 -22.83987 -22.75090 -21.75262 -20.70060 -19.53333 -18.20956 -17.90552 -16.93982 -16.80643 -16.58407 -15.44254 -15.08458 -15.04309 -14.88851 -14.80834 -14.37374 -14.19684 -13.90022 -13.54804 -13.27560 -12.99244 -12.90147 -12.59754 -12.44067 -12.22575 -11.97885 -11.96318 -11.68306 -11.27348 -11.25459 -10.98344 -10.87148 -10.62593 -10.24932 -10.19793 -10.09919 -9.70849 -9.46415 -9.05383 -8.98392 -8.48122 -8.11052 -7.71217 -6.09486 -4.14506 0.81298 1.40455 2.69094 2.83588 3.03940 3.29117 3.33818 3.37428 3.50538 3.68773 3.98624 4.30401 4.40804 4.44143 4.57635 4.61688 4.64458 4.75789 4.95074 5.24661 5.24858 5.26009 5.36646 5.40662 5.45933 5.53578 5.58998 5.69914 5.75850 5.94434 6.03975 6.14811 6.24227 6.27740 6.32149 6.54743 6.70203 7.05153 7.24453 7.26872 7.38454 7.54575 7.87313 8.04060 8.15967 8.42404 8.85020 9.08522 9.50890 10.98416 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.002475 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.857419 B =11310.832517 C =11972.230176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.530 4.530 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.696 3.304 13 O -0.564 6.564 14 N -0.695 5.695 15 C 0.218 3.782 16 C -0.169 4.169 17 C -0.033 4.033 18 C -0.175 4.175 19 C 0.572 3.428 20 O -0.543 6.543 21 N -0.703 5.703 22 C 0.081 3.919 23 C -0.195 4.195 24 C -0.191 4.191 25 C -0.061 4.061 26 C -0.133 4.133 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.402 0.598 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -20.194 6.749 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.345 5.345 3 C 0.140 3.860 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.397 3.603 13 O -0.439 6.439 14 N -0.343 5.343 15 C 0.120 3.880 16 C -0.190 4.190 17 C -0.052 4.052 18 C -0.180 4.180 19 C 0.361 3.639 20 O -0.422 6.422 21 N -0.353 5.353 22 C -0.025 4.025 23 C -0.233 4.233 24 C -0.229 4.229 25 C -0.080 4.080 26 C -0.153 4.153 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.238 0.762 37 H 0.156 0.844 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.142 0.858 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.833 -20.528 6.388 21.515 hybrid contribution -0.116 0.925 -0.823 1.244 sum -0.950 -19.602 5.565 20.399 Atomic orbital electron populations 1.21624 0.81495 1.02491 1.00577 1.47553 1.05868 1.06326 1.74704 1.19283 0.92382 0.76716 0.97596 1.21400 1.36802 1.06361 0.92277 0.92531 1.24925 0.95261 0.96334 0.97502 1.69915 1.38185 1.14417 1.30809 0.86547 0.78385 0.77849 0.84580 1.20248 1.21126 1.20162 1.15933 0.85606 0.80052 0.78669 1.90916 1.11204 1.85444 1.56367 1.43051 1.10364 1.03919 1.77010 1.17800 0.92850 0.84891 0.92505 1.20827 1.03174 0.92376 1.02614 1.20921 0.92246 0.97347 0.94698 1.19660 0.99187 0.93192 1.05922 1.18240 0.79689 0.88305 0.77635 1.90745 1.67649 1.37158 1.46608 1.45312 1.26287 1.11904 1.51822 1.21587 0.92424 0.89112 0.99347 1.23448 1.03968 1.02586 0.93322 1.23404 0.92569 1.03523 1.03391 1.21073 0.98330 0.91561 0.97073 1.21196 0.95984 0.98590 0.99570 0.93422 0.90123 0.93135 0.94608 0.93596 0.92583 0.75822 0.85110 0.84571 0.76164 0.84414 0.88425 0.87983 0.87826 0.88311 0.85822 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.25 59.85 0.61 1.80 16 2 N -0.61 -12.32 2.86 -188.74 -0.54 -12.86 16 3 C 0.26 6.54 5.16 -5.19 -0.03 6.52 16 4 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.70 14.02 8.00 -86.92 -0.70 13.32 16 13 O -0.56 -13.66 13.61 5.30 0.07 -13.59 16 14 N -0.69 -10.44 5.20 -14.22 -0.07 -10.51 16 15 C 0.22 3.16 6.27 -83.73 -0.53 2.63 16 16 C -0.17 -2.05 9.94 -39.46 -0.39 -2.45 16 17 C -0.03 -0.40 9.58 -39.22 -0.38 -0.78 16 18 C -0.18 -2.21 5.88 -104.95 -0.62 -2.83 16 19 C 0.57 7.33 7.76 -12.45 -0.10 7.23 16 20 O -0.54 -8.51 15.90 5.29 0.08 -8.43 16 21 N -0.70 -6.90 5.52 -54.83 -0.30 -7.21 16 22 C 0.08 0.71 6.43 -67.93 -0.44 0.28 16 23 C -0.19 -1.29 10.46 -26.70 -0.28 -1.57 16 24 C -0.19 -1.25 10.46 -26.69 -0.28 -1.53 16 25 C -0.06 -0.74 9.53 -39.22 -0.37 -1.12 16 26 C -0.13 -1.96 8.62 -39.46 -0.34 -2.30 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.05 0.57 6.29 -51.93 -0.33 0.24 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.40 4.67 6.51 -40.82 -0.27 4.40 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.14 1.57 7.64 -52.49 -0.40 1.17 16 36 H 0.40 3.11 6.85 -40.82 -0.28 2.83 16 37 H 0.14 1.36 7.40 -51.93 -0.38 0.97 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.12 1.14 6.39 -52.49 -0.34 0.80 16 43 H 0.15 2.42 6.42 -52.49 -0.34 2.09 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -34.76 366.37 -9.40 -44.16 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.63 Total: 5.79 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -4.25 Total: 5.84 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.18 Total: -55.89 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.16 Total: -22.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.76 -9.40 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176546694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.398 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds