Wall clock time and date at job start Tue Mar 31 2020 11:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.46502 * 119.99767 * 2 1 4 4 C 1.50703 * 109.46643 * 269.99539 * 3 2 1 5 5 H 1.08001 * 120.00139 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99871 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99727 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47415 * 60.00472 * 8 6 4 10 10 H 1.48501 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47226 * 299.99791 * 8 6 4 12 12 C 1.34773 * 120.00031 * 179.97438 * 2 1 3 13 13 O 1.21573 * 120.00300 * 180.02562 * 12 2 1 14 14 N 1.34781 * 119.99723 * 0.02562 * 12 2 1 15 15 C 1.39434 * 119.99691 * 185.29808 * 14 12 2 16 16 C 1.39136 * 119.92427 * 213.42536 * 15 14 12 17 17 C 1.37659 * 120.07446 * 179.74720 * 16 15 14 18 18 C 1.39760 * 119.92486 * 0.24990 * 17 16 15 19 19 C 1.47576 * 120.07412 * 179.97438 * 18 17 16 20 20 O 1.21589 * 120.00088 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99950 * 180.02562 * 19 18 17 22 22 C 1.46504 * 120.00057 * 180.02562 * 21 19 18 23 23 C 1.52995 * 117.49832 * 223.74786 * 22 21 19 24 24 C 1.52997 * 117.49894 * 155.08611 * 22 21 19 25 25 C 1.39764 * 119.85093 * 0.02562 * 18 17 16 26 26 C 1.37656 * 119.92375 * 359.97438 * 25 18 17 27 27 H 1.09000 * 109.46925 * 270.00458 * 1 2 3 28 28 H 1.09002 * 109.46742 * 30.00285 * 1 2 3 29 29 H 1.08993 * 109.47022 * 150.00279 * 1 2 3 30 30 H 1.08999 * 109.47337 * 29.99525 * 3 2 1 31 31 H 1.08997 * 109.47179 * 150.00266 * 3 2 1 32 32 H 0.96997 * 119.99814 * 179.97438 * 7 6 4 33 33 H 0.97002 * 120.00151 * 5.29290 * 14 12 2 34 34 H 1.07996 * 119.96344 * 0.02562 * 16 15 14 35 35 H 1.07997 * 120.04123 * 180.27587 * 17 16 15 36 36 H 0.96996 * 120.00408 * 0.02562 * 21 19 18 37 37 H 1.09001 * 115.54755 * 9.41295 * 22 21 19 38 38 H 1.08998 * 117.50154 * 359.97438 * 23 22 21 39 39 H 1.09006 * 117.50213 * 145.01925 * 23 22 21 40 40 H 1.09002 * 117.49823 * 214.97507 * 24 22 21 41 41 H 1.08998 * 117.49937 * 359.97438 * 24 22 21 42 42 H 1.07996 * 120.03461 * 180.02562 * 25 18 17 43 43 H 1.07998 * 119.96112 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1270 2.8774 -1.6729 7 7 3.5551 3.6171 -0.6733 8 14 3.4377 3.4168 -3.4341 9 1 2.1400 3.5952 -4.1335 10 1 4.1814 4.7022 -3.4342 11 1 4.2395 2.3817 -4.1347 12 6 2.1390 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1577 -3.5393 0.1126 16 6 1.6862 -4.6742 -0.5397 17 6 2.3704 -5.8641 -0.4355 18 6 3.5371 -5.9327 0.3309 19 6 4.2730 -7.2068 0.4454 20 8 3.8641 -8.1985 -0.1270 21 7 5.3977 -7.2713 1.1853 22 6 6.1285 -8.5360 1.2985 23 6 6.6336 -8.9382 2.6855 24 6 7.6228 -8.4621 1.6187 25 6 4.0048 -4.7921 0.9895 26 6 3.3157 -3.6054 0.8810 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5137 31 1 3.1500 1.1385 0.5138 32 1 4.0325 4.4426 -0.8506 33 1 0.4981 -2.3362 -0.0773 34 1 0.7848 -4.6205 -1.1322 35 1 2.0064 -6.7437 -0.9456 36 1 5.7233 -6.4804 1.6429 37 1 5.7949 -9.3328 0.6338 38 1 6.4226 -8.2617 3.5138 39 1 6.6329 -9.9997 2.9332 40 1 8.2723 -9.2107 1.1649 41 1 8.0622 -7.4727 1.7446 42 1 4.9063 -4.8416 1.5822 43 1 3.6768 -2.7236 1.3894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176546694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:52 Heat of formation + Delta-G solvation = -20.903531 kcal Electronic energy + Delta-G solvation = -25276.109544 eV Core-core repulsion = 21514.743035 eV Total energy + Delta-G solvation = -3761.366509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.84563 -41.03883 -39.37736 -37.97925 -36.72189 -35.91544 -34.65708 -33.98222 -31.93021 -30.94950 -29.50222 -27.42763 -25.72742 -24.38575 -23.94810 -23.27162 -22.68904 -21.67743 -20.94149 -19.40278 -18.99996 -18.67191 -18.25979 -17.65721 -16.85218 -16.68313 -16.04052 -15.99277 -15.91432 -15.74277 -15.25668 -15.01220 -14.81356 -14.61529 -14.28152 -13.97532 -13.75579 -13.61014 -13.57454 -13.46701 -13.13603 -12.81705 -12.53631 -12.53328 -12.38385 -12.29676 -12.18106 -11.76917 -11.48251 -11.46049 -11.17428 -10.98917 -10.63244 -10.02307 -9.83670 -9.57551 -9.06639 -8.21636 -6.36049 -0.24084 0.38694 1.37389 1.41253 1.48008 1.59667 1.71960 2.02727 2.19205 2.39297 2.82899 3.00314 3.03854 3.08690 3.66626 3.75524 3.83024 3.93662 4.05485 4.07510 4.25154 4.29470 4.38226 4.51169 4.64867 4.76894 4.77892 4.80600 4.94427 4.99448 5.02676 5.12764 5.19629 5.20920 5.28047 5.28842 5.43839 5.48886 5.53781 5.76609 5.92541 6.03790 6.06035 6.42888 6.72173 6.99006 7.11819 7.30525 7.56989 8.84654 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.002475 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.857419 B =11310.832517 C =11972.230176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.275 3.725 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.964 3.036 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.693 3.307 13 O -0.614 6.614 14 N -0.674 5.674 15 C 0.194 3.806 16 C -0.152 4.152 17 C -0.037 4.037 18 C -0.176 4.176 19 C 0.569 3.431 20 O -0.577 6.577 21 N -0.690 5.690 22 C 0.051 3.949 23 C -0.181 4.181 24 C -0.177 4.177 25 C -0.053 4.053 26 C -0.152 4.152 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.003 0.997 32 H 0.267 0.733 33 H 0.423 0.577 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.412 0.588 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 -21.572 6.205 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.154 3.846 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.789 3.211 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.206 1.206 12 C 0.395 3.605 13 O -0.494 6.494 14 N -0.324 5.324 15 C 0.096 3.904 16 C -0.173 4.173 17 C -0.057 4.057 18 C -0.180 4.180 19 C 0.359 3.641 20 O -0.458 6.458 21 N -0.341 5.341 22 C -0.055 4.055 23 C -0.220 4.220 24 C -0.215 4.215 25 C -0.072 4.072 26 C -0.173 4.173 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.263 0.737 34 H 0.179 0.821 35 H 0.165 0.835 36 H 0.250 0.750 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.168 0.832 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.576 -21.944 5.873 22.771 hybrid contribution 0.139 1.230 -0.574 1.364 sum -1.437 -20.715 5.299 21.430 Atomic orbital electron populations 1.21934 0.77809 1.04067 1.02800 1.47396 1.08077 1.04863 1.74879 1.18727 0.91062 0.78885 0.95962 1.21681 1.36892 1.06486 0.93148 0.93018 1.25802 0.94957 0.96464 1.01733 1.70027 1.38804 1.14850 1.32924 0.85518 0.78808 0.77310 0.79468 1.18501 1.20349 1.20606 1.16079 0.85126 0.81097 0.78238 1.90877 1.13633 1.86389 1.58484 1.42627 1.11042 1.02499 1.76236 1.18027 0.93381 0.85162 0.93797 1.21027 1.03678 0.91021 1.01586 1.21152 0.92172 0.97801 0.94541 1.19812 0.99337 0.93187 1.05655 1.18276 0.80296 0.87813 0.77763 1.90727 1.68744 1.38081 1.48283 1.45245 1.25299 1.12863 1.50650 1.21695 0.94125 0.88471 1.01174 1.23521 1.02637 1.03466 0.92359 1.23491 0.91218 1.04257 1.02523 1.21228 0.98777 0.90424 0.96798 1.21134 0.96985 0.98603 1.00540 0.90829 0.90751 0.89386 0.95092 0.97928 0.92366 0.73653 0.82111 0.83536 0.74967 0.85958 0.87782 0.86878 0.86679 0.87623 0.83241 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 10.25 127.77 1.31 3.37 16 2 N -0.62 -25.12 2.86 -869.30 -2.48 -27.61 16 3 C 0.28 14.38 5.16 85.63 0.44 14.82 16 4 C -0.54 -30.68 9.39 25.60 0.24 -30.44 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.55 5.46 84.66 0.46 1.01 16 7 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 8 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 9 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.69 28.25 8.00 179.05 1.43 29.69 16 13 O -0.61 -31.05 13.61 -3.95 -0.05 -31.10 16 14 N -0.67 -19.51 5.20 -317.17 -1.65 -21.16 16 15 C 0.19 5.44 6.27 38.36 0.24 5.68 16 16 C -0.15 -3.38 9.94 22.35 0.22 -3.16 16 17 C -0.04 -0.86 9.58 22.50 0.22 -0.64 16 18 C -0.18 -4.25 5.88 -20.08 -0.12 -4.37 16 19 C 0.57 14.14 7.76 86.71 0.67 14.81 16 20 O -0.58 -17.91 15.90 -4.00 -0.06 -17.97 16 21 N -0.69 -12.78 5.52 -445.66 -2.46 -15.24 16 22 C 0.05 0.83 6.43 44.99 0.29 1.12 16 23 C -0.18 -2.03 10.46 30.62 0.32 -1.71 16 24 C -0.18 -1.96 10.46 30.62 0.32 -1.64 16 25 C -0.05 -1.26 9.53 22.50 0.21 -1.04 16 26 C -0.15 -4.54 8.62 22.35 0.19 -4.34 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 29 H 0.09 1.70 6.29 -2.39 -0.02 1.68 16 30 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 31 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 32 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.42 8.67 6.51 -92.71 -0.60 8.07 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.15 3.11 7.64 -2.91 -0.02 3.09 16 36 H 0.41 5.73 6.85 -92.71 -0.63 5.09 16 37 H 0.12 2.40 7.40 -2.39 -0.02 2.39 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.15 2.58 6.39 -2.91 -0.02 2.56 16 43 H 0.12 4.21 6.42 -2.91 -0.02 4.19 16 Total: -1.00 -78.45 366.37 1.88 -76.56 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.18 Total: 21.66 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.46 Total: 23.16 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.30 Total: -118.75 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.12 Total: -49.07 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -78.45 1.88 -76.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176546694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.661 kcal (2) G-P(sol) polarization free energy of solvation -78.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds