Wall clock time and date at job start Tue Mar 31 2020 11:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 120.00059 * 2 1 4 4 C 1.50698 * 109.47476 * 270.00193 * 3 2 1 5 5 H 1.08009 * 119.99369 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00455 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00098 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99906 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47374 * 89.99776 * 8 6 4 10 10 H 1.48505 * 109.47400 * 210.00343 * 8 6 4 11 11 H 1.48506 * 109.46867 * 329.99846 * 8 6 4 12 12 C 1.34769 * 119.99742 * 179.97438 * 2 1 3 13 13 O 1.21591 * 119.99788 * 180.02562 * 12 2 1 14 14 N 1.34776 * 120.00497 * 0.02562 * 12 2 1 15 15 C 1.39946 * 120.00315 * 184.59954 * 14 12 2 16 16 C 1.38929 * 120.03230 * 324.64911 * 15 14 12 17 17 C 1.38145 * 120.07043 * 179.72148 * 16 15 14 18 18 C 1.38178 * 120.13858 * 0.55555 * 17 16 15 19 19 C 1.38909 * 120.06609 * 359.71914 * 18 17 16 20 20 N 1.39922 * 120.03266 * 179.97438 * 19 18 17 21 21 C 1.34780 * 120.00001 * 215.11219 * 20 19 18 22 22 O 1.21281 * 119.99917 * 355.38483 * 21 20 19 23 23 C 1.50698 * 120.00069 * 175.37994 * 21 20 19 24 24 C 1.53004 * 117.49991 * 248.62530 * 23 21 20 25 25 C 1.52992 * 117.50046 * 180.02562 * 23 21 20 26 26 C 1.38725 * 120.03445 * 144.92138 * 15 14 12 27 27 H 1.08997 * 109.47076 * 270.00048 * 1 2 3 28 28 H 1.09005 * 109.46790 * 29.99763 * 1 2 3 29 29 H 1.08996 * 109.46759 * 149.99772 * 1 2 3 30 30 H 1.09010 * 109.47210 * 30.00090 * 3 2 1 31 31 H 1.08993 * 109.46961 * 149.99595 * 3 2 1 32 32 H 0.97000 * 119.99739 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99518 * 4.87115 * 14 12 2 34 34 H 1.08002 * 119.96598 * 359.97438 * 16 15 14 35 35 H 1.07998 * 119.93133 * 180.27359 * 17 16 15 36 36 H 1.07994 * 119.96691 * 179.74524 * 18 17 16 37 37 H 0.96999 * 120.00387 * 35.12246 * 20 19 18 38 38 H 1.09003 * 115.55169 * 34.33235 * 23 21 20 39 39 H 1.09000 * 117.49668 * 0.02562 * 24 23 21 40 40 H 1.08996 * 117.49782 * 145.01699 * 24 23 21 41 41 H 1.09001 * 117.50325 * 214.97729 * 25 23 21 42 42 H 1.09006 * 117.50110 * 359.97438 * 25 23 21 43 43 H 1.07998 * 120.06902 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3466 3.2568 -2.9126 8 14 3.7340 3.9287 -0.2529 9 1 5.1070 3.5068 0.1238 10 1 3.7499 5.3554 -0.6647 11 1 2.8273 3.7596 0.9111 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1613 -3.5444 0.0982 16 6 3.4041 -3.6824 -0.5073 17 6 4.0947 -4.8745 -0.4065 18 6 3.5471 -5.9370 0.2868 19 6 2.3024 -5.8073 0.8896 20 7 1.7483 -6.8838 1.5910 21 6 0.4166 -7.0896 1.5675 22 8 -0.3100 -6.2954 1.0086 23 6 -0.1697 -8.3066 2.2354 24 6 -0.7785 -9.3828 1.3342 25 6 -1.6881 -8.4840 2.1734 26 6 1.6088 -4.6091 0.7951 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5139 31 1 3.1499 1.1383 0.5139 32 1 3.8234 4.0827 -3.0898 33 1 0.4977 -2.3359 -0.0712 34 1 3.8326 -2.8553 -1.0540 35 1 5.0626 -4.9779 -0.8743 36 1 4.0876 -6.8691 0.3604 37 1 2.3226 -7.4819 2.0944 38 1 0.3391 -8.6369 3.1411 39 1 -0.7545 -9.2107 0.2581 40 1 -0.6700 -10.4213 1.6467 41 1 -2.1784 -8.9310 3.0381 42 1 -2.2631 -7.7202 1.6497 43 1 0.6408 -4.5059 1.2625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176548213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:10 Heat of formation + Delta-G solvation = 11.382447 kcal Electronic energy + Delta-G solvation = -25675.178747 eV Core-core repulsion = 21915.212263 eV Total energy + Delta-G solvation = -3759.966484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88881 -40.01449 -38.44240 -36.58653 -35.44871 -34.77651 -33.95428 -32.44885 -30.10144 -29.34851 -28.10120 -25.92762 -25.21322 -23.18947 -22.89512 -22.52540 -21.50692 -20.40960 -19.38488 -18.30530 -17.65559 -17.33070 -16.94574 -16.11906 -15.79682 -15.70484 -15.19363 -14.95902 -14.83330 -14.41344 -14.18687 -13.65678 -13.44865 -13.38508 -12.98654 -12.91373 -12.49223 -12.40343 -12.08501 -12.00509 -11.79956 -11.57412 -11.42854 -11.08639 -10.99008 -10.93401 -10.62751 -10.51279 -10.16774 -10.07096 -9.81477 -9.55141 -9.27335 -8.57187 -8.31613 -7.92599 -7.58075 -6.06840 -4.05588 1.34562 1.49649 2.22060 2.69434 3.15142 3.31485 3.37363 3.39224 3.40334 3.69007 4.04893 4.23521 4.33713 4.40619 4.42129 4.43383 4.64815 5.05602 5.13867 5.14893 5.25622 5.28703 5.47138 5.48247 5.50176 5.55321 5.64985 5.69404 5.78113 5.80483 6.08473 6.25546 6.30585 6.48969 6.61462 6.70291 6.79900 6.90535 7.14463 7.25979 7.30323 7.50400 7.63613 7.85748 8.46215 8.49419 8.96282 9.15562 9.53314 11.06565 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.002617 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.391354 B =10696.272343 C =11348.045721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.608 5.608 3 C 0.230 3.770 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.701 3.299 13 O -0.568 6.568 14 N -0.694 5.694 15 C 0.195 3.805 16 C -0.130 4.130 17 C -0.084 4.084 18 C -0.168 4.168 19 C 0.151 3.849 20 N -0.666 5.666 21 C 0.540 3.460 22 O -0.519 6.519 23 C -0.196 4.196 24 C -0.151 4.151 25 C -0.146 4.146 26 C -0.155 4.155 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.411 0.589 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -25.467 11.660 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.342 5.342 3 C 0.109 3.891 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.403 3.597 13 O -0.444 6.444 14 N -0.343 5.343 15 C 0.098 3.902 16 C -0.151 4.151 17 C -0.103 4.103 18 C -0.189 4.189 19 C 0.058 3.942 20 N -0.311 5.311 21 C 0.328 3.672 22 O -0.394 6.394 23 C -0.218 4.218 24 C -0.189 4.189 25 C -0.184 4.184 26 C -0.178 4.178 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.246 0.754 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.016 -24.628 11.174 27.940 hybrid contribution 0.185 0.339 0.832 0.917 sum -6.830 -24.289 12.006 27.942 Atomic orbital electron populations 1.21632 0.81095 1.02857 1.00527 1.47126 1.05862 1.05693 1.75563 1.19623 0.92281 0.78772 0.98384 1.21352 1.36952 1.07133 0.91324 0.90760 1.24851 0.95252 0.97349 0.95593 1.69900 1.41481 1.23558 1.18648 0.86844 0.80165 0.79718 0.82897 1.19879 1.21096 1.19068 1.15842 0.85496 0.80025 0.78324 1.90881 1.11274 1.85544 1.56695 1.42910 1.10223 1.03583 1.77600 1.17368 0.92973 0.84753 0.95089 1.21523 0.94917 0.98574 1.00126 1.20834 0.99501 0.92063 0.97905 1.20760 0.96092 0.99909 1.02173 1.17305 0.93823 0.86663 0.96450 1.43339 1.07826 1.29224 1.50696 1.19816 0.81672 0.86261 0.79444 1.90715 1.59464 1.45743 1.43464 1.22161 0.98901 0.97663 1.03028 1.22963 1.02264 0.95354 0.98288 1.22978 0.90280 1.02461 1.02646 1.20852 1.02690 0.91565 1.02651 0.93487 0.90005 0.92781 0.94989 0.94337 0.92575 0.75929 0.83515 0.85407 0.86067 0.75381 0.85618 0.88082 0.87613 0.87745 0.87209 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.25 59.85 0.61 1.93 16 2 N -0.61 -12.94 2.86 -188.74 -0.54 -13.48 16 3 C 0.23 5.71 4.23 -5.20 -0.02 5.69 16 4 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 5 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 8 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 C 0.70 15.20 8.12 -86.93 -0.71 14.49 16 13 O -0.57 -14.34 13.37 5.29 0.07 -14.27 16 14 N -0.69 -12.11 5.21 -14.24 -0.07 -12.19 16 15 C 0.20 3.30 6.29 -83.72 -0.53 2.77 16 16 C -0.13 -2.24 8.69 -39.36 -0.34 -2.58 16 17 C -0.08 -1.13 10.03 -39.64 -0.40 -1.53 16 18 C -0.17 -1.96 9.96 -39.36 -0.39 -2.35 16 19 C 0.15 1.90 6.30 -83.72 -0.53 1.38 16 20 N -0.67 -6.17 5.34 -9.88 -0.05 -6.22 16 21 C 0.54 5.56 7.46 -10.98 -0.08 5.48 16 22 O -0.52 -7.33 13.69 5.56 0.08 -7.25 16 23 C -0.20 -1.28 6.19 -91.77 -0.57 -1.85 16 24 C -0.15 -0.84 10.23 -26.75 -0.27 -1.11 16 25 C -0.15 -0.92 10.04 -26.76 -0.27 -1.19 16 26 C -0.15 -2.31 8.61 -39.21 -0.34 -2.65 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 29 H 0.05 0.72 6.30 -51.93 -0.33 0.39 16 30 H 0.03 0.75 7.13 -51.92 -0.37 0.38 16 31 H 0.04 1.02 6.85 -51.93 -0.36 0.66 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.40 5.91 6.52 -40.82 -0.27 5.64 16 34 H 0.15 2.94 6.24 -52.49 -0.33 2.61 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.41 2.30 8.82 -40.82 -0.36 1.94 16 38 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 43 H 0.14 2.09 6.22 -52.49 -0.33 1.77 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -36.85 361.46 -8.94 -45.78 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.70 Total: 7.42 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -4.27 Total: 4.81 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.11 Total: -58.98 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.15 Total: -21.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.85 -8.94 -45.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176548213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.166 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds