Wall clock time and date at job start Tue Mar 31 2020 11:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 120.00059 * 2 1 4 4 C 1.50698 * 109.47476 * 270.00193 * 3 2 1 5 5 H 1.08009 * 119.99369 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00455 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00098 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99906 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47374 * 89.99776 * 8 6 4 10 10 H 1.48505 * 109.47400 * 210.00343 * 8 6 4 11 11 H 1.48506 * 109.46867 * 329.99846 * 8 6 4 12 12 C 1.34769 * 119.99742 * 179.97438 * 2 1 3 13 13 O 1.21591 * 119.99788 * 180.02562 * 12 2 1 14 14 N 1.34776 * 120.00497 * 0.02562 * 12 2 1 15 15 C 1.39946 * 120.00315 * 184.59954 * 14 12 2 16 16 C 1.38929 * 120.03230 * 324.64911 * 15 14 12 17 17 C 1.38145 * 120.07043 * 179.72148 * 16 15 14 18 18 C 1.38178 * 120.13858 * 0.55555 * 17 16 15 19 19 C 1.38909 * 120.06609 * 359.71914 * 18 17 16 20 20 N 1.39922 * 120.03266 * 179.97438 * 19 18 17 21 21 C 1.34780 * 120.00001 * 215.11219 * 20 19 18 22 22 O 1.21281 * 119.99917 * 355.38483 * 21 20 19 23 23 C 1.50698 * 120.00069 * 175.37994 * 21 20 19 24 24 C 1.53004 * 117.49991 * 248.62530 * 23 21 20 25 25 C 1.52992 * 117.50046 * 180.02562 * 23 21 20 26 26 C 1.38725 * 120.03445 * 144.92138 * 15 14 12 27 27 H 1.08997 * 109.47076 * 270.00048 * 1 2 3 28 28 H 1.09005 * 109.46790 * 29.99763 * 1 2 3 29 29 H 1.08996 * 109.46759 * 149.99772 * 1 2 3 30 30 H 1.09010 * 109.47210 * 30.00090 * 3 2 1 31 31 H 1.08993 * 109.46961 * 149.99595 * 3 2 1 32 32 H 0.97000 * 119.99739 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99518 * 4.87115 * 14 12 2 34 34 H 1.08002 * 119.96598 * 359.97438 * 16 15 14 35 35 H 1.07998 * 119.93133 * 180.27359 * 17 16 15 36 36 H 1.07994 * 119.96691 * 179.74524 * 18 17 16 37 37 H 0.96999 * 120.00387 * 35.12246 * 20 19 18 38 38 H 1.09003 * 115.55169 * 34.33235 * 23 21 20 39 39 H 1.09000 * 117.49668 * 0.02562 * 24 23 21 40 40 H 1.08996 * 117.49782 * 145.01699 * 24 23 21 41 41 H 1.09001 * 117.50325 * 214.97729 * 25 23 21 42 42 H 1.09006 * 117.50110 * 359.97438 * 25 23 21 43 43 H 1.07998 * 120.06902 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3466 3.2568 -2.9126 8 14 3.7340 3.9287 -0.2529 9 1 5.1070 3.5068 0.1238 10 1 3.7499 5.3554 -0.6647 11 1 2.8273 3.7596 0.9111 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1613 -3.5444 0.0982 16 6 3.4041 -3.6824 -0.5073 17 6 4.0947 -4.8745 -0.4065 18 6 3.5471 -5.9370 0.2868 19 6 2.3024 -5.8073 0.8896 20 7 1.7483 -6.8838 1.5910 21 6 0.4166 -7.0896 1.5675 22 8 -0.3100 -6.2954 1.0086 23 6 -0.1697 -8.3066 2.2354 24 6 -0.7785 -9.3828 1.3342 25 6 -1.6881 -8.4840 2.1734 26 6 1.6088 -4.6091 0.7951 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5139 31 1 3.1499 1.1383 0.5139 32 1 3.8234 4.0827 -3.0898 33 1 0.4977 -2.3359 -0.0712 34 1 3.8326 -2.8553 -1.0540 35 1 5.0626 -4.9779 -0.8743 36 1 4.0876 -6.8691 0.3604 37 1 2.3226 -7.4819 2.0944 38 1 0.3391 -8.6369 3.1411 39 1 -0.7545 -9.2107 0.2581 40 1 -0.6700 -10.4213 1.6467 41 1 -2.1784 -8.9310 3.0381 42 1 -2.2631 -7.7202 1.6497 43 1 0.6408 -4.5059 1.2625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176548213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:09 Heat of formation + Delta-G solvation = -14.691613 kcal Electronic energy + Delta-G solvation = -25676.309403 eV Core-core repulsion = 21915.212263 eV Total energy + Delta-G solvation = -3761.097140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.95251 -41.31979 -39.58468 -37.31532 -36.79378 -36.25643 -35.24658 -34.54647 -31.36112 -30.71268 -29.73726 -27.46927 -25.98707 -24.95115 -23.63907 -23.28968 -22.92417 -21.26071 -20.82909 -19.52569 -19.15787 -18.73502 -18.44313 -17.31942 -17.12028 -16.68371 -16.42656 -16.30238 -16.12350 -15.58988 -15.34532 -15.16210 -14.94680 -14.50461 -14.46403 -14.19223 -13.78037 -13.70839 -13.56973 -13.32573 -13.03485 -12.82570 -12.59620 -12.42981 -12.41393 -12.06664 -11.80779 -11.75320 -11.52354 -11.46245 -11.15996 -11.05102 -10.83443 -10.78194 -9.61852 -9.36294 -8.91198 -8.33926 -6.39477 0.23958 0.35605 1.33125 1.38171 1.42165 1.46261 1.61765 1.96461 2.13260 2.31448 2.81335 2.93642 2.95460 3.01460 3.63526 3.85578 3.97379 3.98072 4.18333 4.21580 4.23409 4.28694 4.42734 4.52833 4.56831 4.66736 4.71278 4.77225 4.83721 4.88721 4.92511 5.05677 5.20456 5.24334 5.30458 5.34651 5.43471 5.47956 5.54691 5.61859 5.94540 6.08281 6.25228 6.41338 6.61251 6.91743 7.10839 7.21829 7.52090 8.83230 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.002617 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.391354 B =10696.272343 C =11348.045721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.240 3.760 4 C -0.537 4.537 5 H 0.025 0.975 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.236 1.236 12 C 0.695 3.305 13 O -0.613 6.613 14 N -0.679 5.679 15 C 0.168 3.832 16 C -0.161 4.161 17 C -0.081 4.081 18 C -0.148 4.148 19 C 0.155 3.845 20 N -0.652 5.652 21 C 0.533 3.467 22 O -0.564 6.564 23 C -0.194 4.194 24 C -0.140 4.140 25 C -0.155 4.155 26 C -0.158 4.158 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.269 0.731 33 H 0.416 0.584 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.432 0.568 38 H 0.161 0.839 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.083 0.917 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 -28.220 14.692 32.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.351 5.351 3 C 0.118 3.882 4 C -0.576 4.576 5 H 0.043 0.957 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.159 1.159 12 C 0.397 3.603 13 O -0.493 6.493 14 N -0.330 5.330 15 C 0.072 3.928 16 C -0.183 4.183 17 C -0.100 4.100 18 C -0.169 4.169 19 C 0.060 3.940 20 N -0.298 5.298 21 C 0.323 3.677 22 O -0.442 6.442 23 C -0.215 4.215 24 C -0.177 4.177 25 C -0.193 4.193 26 C -0.181 4.181 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.255 0.745 34 H 0.125 0.875 35 H 0.168 0.832 36 H 0.184 0.816 37 H 0.272 0.728 38 H 0.178 0.822 39 H 0.103 0.897 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.101 0.899 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.404 -27.461 14.235 31.805 hybrid contribution 0.247 1.007 -0.203 1.057 sum -7.158 -26.454 14.032 30.788 Atomic orbital electron populations 1.21927 0.77819 1.03800 1.02991 1.47127 1.07939 1.04543 1.75531 1.19316 0.92615 0.80889 0.95425 1.21554 1.36940 1.06753 0.92334 0.95668 1.25873 0.95221 0.98928 0.98775 1.70056 1.42659 1.24496 1.21363 0.85674 0.79610 0.77648 0.79738 1.20160 1.19937 1.15907 1.16051 0.85145 0.81031 0.78069 1.90841 1.13372 1.86404 1.58661 1.42634 1.10655 1.02767 1.76908 1.17564 0.93444 0.84946 0.96845 1.21369 0.95941 0.99206 1.01736 1.21101 1.00070 0.91129 0.97742 1.21146 0.95414 1.00675 0.99655 1.17477 0.93880 0.86702 0.95921 1.43289 1.08014 1.28339 1.50153 1.20592 0.81527 0.86866 0.78694 1.90704 1.60494 1.47572 1.45424 1.22248 0.98927 0.96159 1.04138 1.23056 1.00883 0.96503 0.97301 1.23039 0.90187 1.02387 1.03670 1.20844 1.02657 0.92012 1.02614 0.90084 0.90413 0.90617 0.92456 0.95972 0.92234 0.74509 0.87527 0.83184 0.81577 0.72839 0.82156 0.89678 0.84648 0.85351 0.89854 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.25 127.77 1.31 3.69 16 2 N -0.62 -26.82 2.86 -869.31 -2.48 -29.30 16 3 C 0.24 12.07 4.23 85.63 0.36 12.43 16 4 C -0.54 -32.47 9.94 25.60 0.25 -32.21 16 5 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 6 C 0.01 0.60 5.47 84.65 0.46 1.06 16 7 N -0.95 -60.88 13.96 21.44 0.30 -60.58 16 8 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 12 C 0.70 31.49 8.12 179.06 1.45 32.95 16 13 O -0.61 -32.89 13.37 -4.00 -0.05 -32.94 16 14 N -0.68 -24.68 5.21 -317.24 -1.65 -26.33 16 15 C 0.17 5.88 6.29 38.13 0.24 6.12 16 16 C -0.16 -5.81 8.69 22.41 0.19 -5.62 16 17 C -0.08 -2.14 10.03 22.23 0.22 -1.91 16 18 C -0.15 -3.01 9.96 22.42 0.22 -2.79 16 19 C 0.16 3.58 6.30 38.14 0.24 3.82 16 20 N -0.65 -10.10 5.34 -303.56 -1.62 -11.72 16 21 C 0.53 9.89 7.46 87.66 0.65 10.54 16 22 O -0.56 -15.71 13.69 -3.03 -0.04 -15.75 16 23 C -0.19 -1.90 6.19 -11.54 -0.07 -1.97 16 24 C -0.14 -1.13 10.23 30.58 0.31 -0.82 16 25 C -0.16 -1.62 10.04 30.58 0.31 -1.32 16 26 C -0.16 -4.70 8.61 22.51 0.19 -4.50 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.08 2.48 8.07 -2.38 -0.02 2.46 16 29 H 0.08 1.98 6.30 -2.39 -0.02 1.97 16 30 H 0.06 2.60 7.13 -2.38 -0.02 2.58 16 31 H 0.02 1.19 6.85 -2.39 -0.02 1.17 16 32 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.42 12.43 6.52 -92.70 -0.60 11.83 16 34 H 0.11 4.70 6.24 -2.91 -0.02 4.68 16 35 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.43 2.96 8.82 -92.71 -0.82 2.14 16 38 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 1.34 7.67 -2.38 -0.02 1.32 16 43 H 0.13 4.06 6.22 -2.91 -0.02 4.05 16 Total: -1.00 -87.42 361.46 2.27 -85.15 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.42 Total: 25.03 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.36 Total: 19.47 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -5.46 Total: -127.93 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.10 Total: -48.70 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -87.42 2.27 -85.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176548213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.459 kcal (2) G-P(sol) polarization free energy of solvation -87.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds