Wall clock time and date at job start Tue Mar 31 2020 11:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00131 * 2 1 4 4 C 1.50696 * 109.47485 * 270.00295 * 3 2 1 5 5 H 1.07996 * 120.00119 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00358 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99873 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00261 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47003 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47196 * 120.00053 * 8 6 4 11 11 H 1.48499 * 109.47199 * 240.00759 * 8 6 4 12 12 C 1.34773 * 120.00204 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00046 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99865 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47164 * 180.02562 * 14 12 2 16 16 N 1.46501 * 109.47356 * 179.97438 * 15 14 12 17 17 C 1.39285 * 125.81396 * 89.99485 * 16 15 14 18 18 C 1.38663 * 133.34240 * 0.02904 * 17 16 15 19 19 C 1.38098 * 119.85477 * 179.97438 * 18 17 16 20 20 C 1.38445 * 120.28496 * 0.02562 * 19 18 17 21 21 C 1.38108 * 120.27837 * 359.73777 * 20 19 18 22 22 C 1.38651 * 119.85200 * 0.48294 * 21 20 19 23 23 N 1.39286 * 133.33624 * 179.85428 * 22 21 20 24 24 C 1.46503 * 125.81634 * 359.67563 * 23 22 21 25 25 C 1.34633 * 125.82073 * 270.00100 * 16 15 14 26 26 O 1.21687 * 125.16331 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.46967 * 269.99857 * 1 2 3 28 28 H 1.09006 * 109.46839 * 29.99708 * 1 2 3 29 29 H 1.08993 * 109.47077 * 149.99739 * 1 2 3 30 30 H 1.09007 * 109.46660 * 30.00057 * 3 2 1 31 31 H 1.08998 * 109.47312 * 149.99961 * 3 2 1 32 32 H 0.96998 * 120.00025 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47454 * 60.00144 * 14 12 2 34 34 H 1.09004 * 109.47092 * 300.00272 * 14 12 2 35 35 H 1.08999 * 109.47305 * 60.00089 * 15 14 12 36 36 H 1.09004 * 109.47030 * 299.99932 * 15 14 12 37 37 H 1.08007 * 120.07039 * 359.95371 * 18 17 16 38 38 H 1.08008 * 119.85898 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.86031 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.06950 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46980 * 89.99904 * 24 23 22 42 42 H 1.08994 * 109.47466 * 210.00028 * 24 23 22 43 43 H 1.08998 * 109.47295 * 330.00730 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0982 1.0960 -2.2417 6 6 3.1261 2.8781 -1.6727 7 7 3.5534 3.6182 -0.6731 8 14 3.4380 3.4171 -3.4338 9 1 2.8608 2.4166 -4.3673 10 1 2.7999 4.7374 -3.6678 11 1 4.9006 3.5258 -3.6665 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6472 -4.9039 0.0001 17 6 1.2392 -5.6101 -1.1290 18 6 1.3695 -5.3847 -2.4910 19 6 0.8460 -6.2919 -3.3911 20 6 0.1913 -7.4250 -2.9394 21 6 0.0608 -7.6605 -1.5848 22 6 0.5791 -6.7531 -0.6735 23 7 0.6065 -6.7059 0.7182 24 6 0.0290 -7.7044 1.6215 25 6 1.2536 -5.5860 1.0921 26 8 1.4518 -5.2420 2.2424 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0303 4.4440 -0.8503 33 1 0.7584 -2.5299 -0.8903 34 1 0.7591 -2.5302 0.8897 35 1 3.0063 -3.5774 0.8894 36 1 3.0063 -3.5774 -0.8905 37 1 1.8791 -4.5015 -2.8471 38 1 0.9478 -6.1166 -4.4520 39 1 -0.2159 -8.1297 -3.6494 40 1 -0.4503 -8.5457 -1.2362 41 1 0.7754 -8.4666 1.8454 42 1 -0.2843 -7.2199 2.5462 43 1 -0.8337 -8.1698 1.1448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192733938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:32 Heat of formation + Delta-G solvation = -1.598686 kcal Electronic energy + Delta-G solvation = -26192.877398 eV Core-core repulsion = 22432.348010 eV Total energy + Delta-G solvation = -3760.529388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65504 -39.09414 -38.49706 -36.13589 -36.02990 -34.84354 -32.71909 -31.90684 -30.71241 -29.20580 -28.12294 -27.34531 -25.83473 -24.41158 -22.74561 -22.63574 -22.21767 -20.47564 -18.48513 -18.15693 -17.67358 -16.77568 -16.57255 -16.25476 -16.19044 -15.36727 -15.21029 -14.89073 -14.53776 -14.37853 -14.35219 -14.16407 -13.83441 -13.37628 -13.19003 -12.79520 -12.69659 -12.47764 -12.31770 -12.18429 -12.13422 -11.82481 -11.39760 -11.22420 -11.14146 -10.86077 -10.73264 -10.67884 -10.58203 -10.51914 -10.17708 -9.62841 -9.00858 -8.61210 -8.45125 -7.97459 -7.67630 -6.05496 -4.10503 0.95746 1.12457 1.94630 2.76729 2.99463 3.28753 3.33826 3.37240 3.41356 3.45933 3.95757 4.23937 4.43584 4.45361 4.66439 4.83306 4.92601 4.95198 4.99031 5.00574 5.13292 5.20000 5.23278 5.29335 5.33140 5.47732 5.51254 5.66640 5.71608 5.87262 5.93779 5.96833 6.10257 6.19605 6.22839 6.30728 6.40048 6.58999 7.02686 7.14552 7.43129 7.50884 7.90497 8.05123 8.21701 8.36885 8.87241 9.03699 9.54544 11.02707 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.003062 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.430287 B = 9142.366836 C =10131.247116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.600 5.600 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.511 3.489 13 O -0.543 6.543 14 C -0.157 4.157 15 C 0.147 3.853 16 N -0.536 5.536 17 C 0.095 3.905 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.107 4.107 22 C 0.086 3.914 23 N -0.545 5.545 24 C 0.102 3.898 25 C 0.677 3.323 26 O -0.551 6.551 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 -24.459 -2.654 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.332 5.332 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.296 3.704 13 O -0.421 6.421 14 C -0.198 4.198 15 C 0.026 3.974 16 N -0.256 5.256 17 C -0.006 4.006 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.015 4.015 23 N -0.268 5.268 24 C -0.039 4.039 25 C 0.380 3.620 26 O -0.426 6.426 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.325 -23.964 -1.620 26.144 hybrid contribution -0.008 0.453 -0.926 1.031 sum -10.333 -23.511 -2.546 25.807 Atomic orbital electron populations 1.21654 0.81367 1.02569 1.00532 1.48145 1.06243 1.07813 1.70978 1.19322 0.92609 0.77979 0.97593 1.21457 1.36539 1.06269 0.92244 0.92401 1.24952 0.95360 0.96391 0.97481 1.69943 1.38350 1.14333 1.30693 0.86431 0.78094 0.78308 0.84508 1.19801 1.20968 1.20844 1.19979 0.87926 0.84787 0.77694 1.90684 1.13699 1.87256 1.50463 1.22037 0.99764 0.93581 1.04443 1.21375 0.92603 0.77337 1.06051 1.45351 1.53616 1.22357 1.04322 1.18148 1.00649 0.92297 0.89533 1.20213 1.02233 1.01263 0.88633 1.20891 0.98507 0.94045 0.99522 1.20846 1.00237 0.98072 0.94194 1.20009 1.02433 0.98649 0.91775 1.18094 1.03048 0.97180 0.83162 1.45028 1.54169 1.22745 1.04818 1.21704 0.98440 0.90245 0.93545 1.16002 0.80659 0.80489 0.84807 1.91050 1.62618 1.72032 1.16923 0.93655 0.90631 0.92532 0.94937 0.93724 0.92735 0.88985 0.88989 0.87881 0.88172 0.84877 0.84950 0.85123 0.85503 0.91403 0.89480 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.60 -12.87 2.86 -182.95 -0.52 -13.40 16 3 C 0.24 6.45 5.16 -5.20 -0.03 6.42 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.51 10.59 7.67 -10.99 -0.08 10.51 16 13 O -0.54 -13.43 15.56 5.56 0.09 -13.34 16 14 C -0.16 -2.42 4.58 -27.88 -0.13 -2.55 16 15 C 0.15 2.20 5.26 -4.04 -0.02 2.18 16 16 N -0.54 -7.47 2.78 -118.90 -0.33 -7.80 16 17 C 0.10 1.13 6.83 -83.80 -0.57 0.56 16 18 C -0.10 -1.02 10.02 -39.48 -0.40 -1.41 16 19 C -0.11 -0.85 10.03 -39.56 -0.40 -1.25 16 20 C -0.11 -0.78 10.03 -39.55 -0.40 -1.17 16 21 C -0.11 -0.83 10.02 -39.48 -0.40 -1.22 16 22 C 0.09 0.92 6.83 -83.80 -0.57 0.35 16 23 N -0.55 -6.30 3.18 -126.33 -0.40 -6.70 16 24 C 0.10 0.77 11.00 59.85 0.66 1.43 16 25 C 0.68 10.17 8.45 -87.17 -0.74 9.43 16 26 O -0.55 -10.00 17.48 5.20 0.09 -9.91 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.09 1.25 7.40 -51.93 -0.38 0.86 16 34 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 35 H 0.10 1.71 7.99 -51.93 -0.41 1.29 16 36 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -36.21 369.40 -8.79 -45.00 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.12 Total: -1.82 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -2.87 Total: 11.61 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.52 Total: -53.85 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.18 Total: -23.25 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.21 -8.79 -45.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192733938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.406 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds