Wall clock time and date at job start Tue Mar 31 2020 11:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00131 * 2 1 4 4 C 1.50696 * 109.47485 * 270.00295 * 3 2 1 5 5 H 1.07996 * 120.00119 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00358 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99873 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00261 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47003 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47196 * 120.00053 * 8 6 4 11 11 H 1.48499 * 109.47199 * 240.00759 * 8 6 4 12 12 C 1.34773 * 120.00204 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00046 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99865 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47164 * 180.02562 * 14 12 2 16 16 N 1.46501 * 109.47356 * 179.97438 * 15 14 12 17 17 C 1.39285 * 125.81396 * 89.99485 * 16 15 14 18 18 C 1.38663 * 133.34240 * 0.02904 * 17 16 15 19 19 C 1.38098 * 119.85477 * 179.97438 * 18 17 16 20 20 C 1.38445 * 120.28496 * 0.02562 * 19 18 17 21 21 C 1.38108 * 120.27837 * 359.73777 * 20 19 18 22 22 C 1.38651 * 119.85200 * 0.48294 * 21 20 19 23 23 N 1.39286 * 133.33624 * 179.85428 * 22 21 20 24 24 C 1.46503 * 125.81634 * 359.67563 * 23 22 21 25 25 C 1.34633 * 125.82073 * 270.00100 * 16 15 14 26 26 O 1.21687 * 125.16331 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.46967 * 269.99857 * 1 2 3 28 28 H 1.09006 * 109.46839 * 29.99708 * 1 2 3 29 29 H 1.08993 * 109.47077 * 149.99739 * 1 2 3 30 30 H 1.09007 * 109.46660 * 30.00057 * 3 2 1 31 31 H 1.08998 * 109.47312 * 149.99961 * 3 2 1 32 32 H 0.96998 * 120.00025 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47454 * 60.00144 * 14 12 2 34 34 H 1.09004 * 109.47092 * 300.00272 * 14 12 2 35 35 H 1.08999 * 109.47305 * 60.00089 * 15 14 12 36 36 H 1.09004 * 109.47030 * 299.99932 * 15 14 12 37 37 H 1.08007 * 120.07039 * 359.95371 * 18 17 16 38 38 H 1.08008 * 119.85898 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.86031 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.06950 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46980 * 89.99904 * 24 23 22 42 42 H 1.08994 * 109.47466 * 210.00028 * 24 23 22 43 43 H 1.08998 * 109.47295 * 330.00730 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0982 1.0960 -2.2417 6 6 3.1261 2.8781 -1.6727 7 7 3.5534 3.6182 -0.6731 8 14 3.4380 3.4171 -3.4338 9 1 2.8608 2.4166 -4.3673 10 1 2.7999 4.7374 -3.6678 11 1 4.9006 3.5258 -3.6665 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6472 -4.9039 0.0001 17 6 1.2392 -5.6101 -1.1290 18 6 1.3695 -5.3847 -2.4910 19 6 0.8460 -6.2919 -3.3911 20 6 0.1913 -7.4250 -2.9394 21 6 0.0608 -7.6605 -1.5848 22 6 0.5791 -6.7531 -0.6735 23 7 0.6065 -6.7059 0.7182 24 6 0.0290 -7.7044 1.6215 25 6 1.2536 -5.5860 1.0921 26 8 1.4518 -5.2420 2.2424 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0303 4.4440 -0.8503 33 1 0.7584 -2.5299 -0.8903 34 1 0.7591 -2.5302 0.8897 35 1 3.0063 -3.5774 0.8894 36 1 3.0063 -3.5774 -0.8905 37 1 1.8791 -4.5015 -2.8471 38 1 0.9478 -6.1166 -4.4520 39 1 -0.2159 -8.1297 -3.6494 40 1 -0.4503 -8.5457 -1.2362 41 1 0.7754 -8.4666 1.8454 42 1 -0.2843 -7.2199 2.5462 43 1 -0.8337 -8.1698 1.1448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192733938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:31 Heat of formation + Delta-G solvation = -24.244961 kcal Electronic energy + Delta-G solvation = -26193.859414 eV Core-core repulsion = 22432.348010 eV Total energy + Delta-G solvation = -3761.511404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.54816 -40.76793 -39.36834 -37.21281 -36.94252 -36.59443 -34.77545 -33.14420 -31.36381 -30.33157 -29.55716 -28.41523 -27.35839 -25.87328 -24.17678 -23.40098 -23.33285 -21.42289 -20.11281 -18.95282 -18.73094 -18.65089 -17.79652 -17.61573 -17.14448 -17.07505 -16.69231 -16.15976 -15.95697 -15.36752 -15.15986 -14.98753 -14.80725 -14.66084 -14.30631 -14.07654 -13.98531 -13.72583 -13.57916 -13.49097 -13.34195 -13.09520 -13.01115 -12.82547 -12.56253 -12.39248 -12.21883 -12.00147 -11.71492 -11.68982 -11.55080 -11.43635 -10.73487 -10.66132 -9.49005 -9.33543 -8.82788 -8.23453 -6.38762 0.27890 0.44033 1.01088 1.37209 1.39624 1.51593 1.70441 1.72084 2.10071 2.33085 2.46538 2.81634 3.06470 3.48411 3.56965 3.62092 3.77801 3.95634 4.04540 4.20675 4.28740 4.38722 4.40303 4.44432 4.47122 4.51505 4.65140 4.70267 4.71607 4.76778 4.89203 4.91939 4.97561 5.13679 5.20262 5.28935 5.52955 5.54794 5.61928 5.70121 5.79107 5.83004 6.03464 6.29618 6.63946 6.72505 7.02093 7.23903 7.38913 8.84352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.003062 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.430287 B = 9142.366836 C =10131.247116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.608 5.608 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.972 3.028 9 H -0.263 1.263 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.503 3.497 13 O -0.592 6.592 14 C -0.133 4.133 15 C 0.155 3.845 16 N -0.538 5.538 17 C 0.062 3.938 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.102 4.102 21 C -0.099 4.099 22 C 0.072 3.928 23 N -0.540 5.540 24 C 0.094 3.906 25 C 0.661 3.339 26 O -0.599 6.599 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.023 0.977 31 H -0.002 1.002 32 H 0.267 0.733 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -27.033 -5.706 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.339 5.339 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.796 3.204 9 H -0.187 1.187 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.291 3.709 13 O -0.474 6.474 14 C -0.174 4.174 15 C 0.033 3.967 16 N -0.258 5.258 17 C -0.038 4.038 18 C -0.136 4.136 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.029 4.029 23 N -0.261 5.261 24 C -0.046 4.046 25 C 0.364 3.636 26 O -0.479 6.479 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.175 0.825 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.887 -26.599 -4.711 29.929 hybrid contribution 0.726 1.146 -0.036 1.357 sum -12.160 -25.454 -4.747 28.606 Atomic orbital electron populations 1.21936 0.77877 1.04155 1.02432 1.48171 1.08440 1.06410 1.70873 1.18806 0.91060 0.80119 0.96392 1.21721 1.36883 1.06593 0.92833 0.92448 1.25924 0.94846 0.96393 1.02232 1.70070 1.38927 1.14849 1.33179 0.85302 0.77856 0.78425 0.78827 1.18699 1.19519 1.20787 1.20856 0.87650 0.86136 0.76223 1.90652 1.16162 1.88093 1.52500 1.21858 0.99269 0.90187 1.06038 1.21094 0.92481 0.78266 1.04886 1.45184 1.53504 1.21849 1.05259 1.18483 1.02531 0.93157 0.89653 1.20397 1.02891 1.02070 0.88225 1.21274 0.97227 0.93555 1.00387 1.21330 0.98488 0.97863 0.94428 1.20451 1.01238 0.98677 0.91617 1.18436 1.03958 0.97701 0.82795 1.45134 1.53109 1.22002 1.05897 1.22018 0.99897 0.89563 0.93119 1.16259 0.81357 0.81628 0.84366 1.90994 1.64782 1.73487 1.18654 0.91582 0.90960 0.89001 0.95869 0.98383 0.92386 0.86186 0.88063 0.90510 0.87995 0.85221 0.82502 0.81500 0.82373 0.90290 0.90443 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.24 127.77 1.31 3.74 16 2 N -0.61 -26.62 2.86 -851.13 -2.43 -29.05 16 3 C 0.26 14.23 5.16 85.63 0.44 14.67 16 4 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 5 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 6 C 0.00 0.28 5.46 84.66 0.46 0.74 16 7 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 8 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 C 0.50 21.53 7.67 87.66 0.67 22.21 16 13 O -0.59 -31.03 15.56 -3.02 -0.05 -31.08 16 14 C -0.13 -4.08 4.58 29.85 0.14 -3.95 16 15 C 0.15 4.84 5.26 86.38 0.45 5.29 16 16 N -0.54 -15.23 2.78 -648.40 -1.81 -17.04 16 17 C 0.06 1.40 6.83 38.40 0.26 1.67 16 18 C -0.11 -2.07 10.02 22.34 0.22 -1.85 16 19 C -0.10 -1.22 10.03 22.29 0.22 -1.00 16 20 C -0.10 -0.88 10.03 22.29 0.22 -0.66 16 21 C -0.10 -1.10 10.02 22.34 0.22 -0.88 16 22 C 0.07 1.37 6.83 38.39 0.26 1.63 16 23 N -0.54 -11.96 3.18 -671.89 -2.14 -14.10 16 24 C 0.09 1.26 11.00 127.77 1.41 2.66 16 25 C 0.66 20.34 8.45 179.14 1.51 21.86 16 26 O -0.60 -22.96 17.48 -4.31 -0.08 -23.03 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.30 8.07 -2.38 -0.02 2.28 16 29 H 0.09 2.20 6.44 -2.39 -0.02 2.19 16 30 H 0.02 1.30 8.07 -2.38 -0.02 1.28 16 31 H 0.00 -0.13 7.42 -2.39 -0.02 -0.14 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.12 3.03 7.40 -2.39 -0.02 3.01 16 34 H 0.10 2.98 8.11 -2.38 -0.02 2.96 16 35 H 0.08 2.78 7.99 -2.39 -0.02 2.76 16 36 H 0.10 3.08 8.10 -2.38 -0.02 3.06 16 37 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 40 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 1.20 8.03 -2.39 -0.02 1.18 16 43 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -84.23 369.40 4.88 -79.35 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.01 Total: 9.81 kcal Atomic # 6 Polarization: 26.92 SS G_CDS: 8.06 Total: 34.97 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -6.09 Total: -116.85 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.12 Total: -54.11 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -84.23 4.88 -79.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192733938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.108 kcal (2) G-P(sol) polarization free energy of solvation -84.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds