Wall clock time and date at job start Tue Mar 31 2020 11:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39737 * 123.89130 * 2 1 4 4 C 1.39381 * 130.73931 * 359.36924 * 3 2 1 5 5 C 1.37871 * 120.22021 * 180.37723 * 4 3 2 6 6 C 1.38880 * 120.30047 * 0.25431 * 5 4 3 7 7 N 1.40111 * 120.15852 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99898 * 144.94415 * 7 6 5 9 9 O 1.21591 * 120.00380 * 4.63937 * 8 7 6 10 10 N 1.34778 * 120.00198 * 184.63580 * 8 7 6 11 11 C 1.46490 * 120.00435 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47366 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47241 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47177 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99653 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00049 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00364 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00153 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47522 * 89.99435 * 18 16 14 20 20 H 1.48500 * 109.46921 * 209.99886 * 18 16 14 21 21 H 1.48505 * 109.46809 * 329.99545 * 18 16 14 22 22 C 1.38964 * 119.68171 * 359.97438 * 6 5 4 23 23 C 1.37634 * 119.86118 * 0.02562 * 22 6 5 24 24 C 1.51151 * 132.77412 * 179.97438 * 23 22 6 25 25 C 1.34358 * 123.89103 * 179.75748 * 2 1 3 26 26 O 1.21295 * 126.43284 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47357 * 180.26903 * 1 2 3 28 28 H 1.09004 * 109.47177 * 300.26486 * 1 2 3 29 29 H 1.09003 * 109.47368 * 60.26590 * 1 2 3 30 30 H 1.07992 * 119.88693 * 0.65448 * 4 3 2 31 31 H 1.07997 * 119.84667 * 180.27990 * 5 4 3 32 32 H 0.96999 * 120.00043 * 324.93628 * 7 6 5 33 33 H 0.97009 * 119.99596 * 0.02562 * 10 8 7 34 34 H 1.09011 * 109.47325 * 300.00140 * 11 10 8 35 35 H 1.08995 * 109.47330 * 59.99916 * 11 10 8 36 36 H 1.09005 * 109.46726 * 299.99359 * 12 11 10 37 37 H 1.08995 * 109.47408 * 59.99420 * 12 11 10 38 38 H 1.09005 * 109.47083 * 299.99053 * 13 12 11 39 39 H 1.08995 * 109.47532 * 59.99325 * 13 12 11 40 40 H 0.97001 * 120.00447 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.07569 * 179.97438 * 22 6 5 42 42 H 1.09006 * 110.50101 * 298.66952 * 24 23 22 43 43 H 1.08992 * 110.50543 * 61.36040 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2441 1.1600 0.0000 4 6 1.8748 2.5039 -0.0116 5 6 2.8396 3.4887 -0.0167 6 6 4.1865 3.1501 -0.0156 7 7 5.1645 4.1533 -0.0213 8 6 6.3194 3.9724 0.6495 9 8 6.5487 2.9072 1.1891 10 7 7.2203 4.9722 0.7222 11 6 8.4758 4.7754 1.4508 12 6 9.3122 6.0546 1.3806 13 6 10.6238 5.8488 2.1411 14 6 11.4479 7.1087 2.0714 15 1 11.0737 7.9698 1.5377 16 6 12.6794 7.1619 2.6889 17 7 13.3989 8.2611 2.6277 18 14 13.3269 5.6721 3.6114 19 1 14.1066 4.8151 2.6827 20 1 14.2023 6.1209 4.7239 21 1 12.1862 4.8962 4.1612 22 6 4.5595 1.8115 -0.0088 23 6 3.5936 0.8310 -0.0038 24 6 3.6637 -0.6789 0.0034 25 6 2.2141 -1.1153 0.0047 26 8 1.8057 -2.2574 0.0100 27 1 -0.3634 -1.0276 0.0048 28 1 -0.3634 0.5180 0.8876 29 1 -0.3634 0.5097 -0.8924 30 1 0.8293 2.7746 -0.0121 31 1 2.5466 4.5282 -0.0211 32 1 5.0105 4.9781 -0.5081 33 1 7.0373 5.8222 0.2920 34 1 8.2583 4.5407 2.4929 35 1 9.0315 3.9524 1.0015 36 1 9.5299 6.2896 0.3387 37 1 8.7563 6.8773 1.8302 38 1 10.4066 5.6136 3.1830 39 1 11.1795 5.0262 1.6911 40 1 14.2655 8.2984 3.0619 41 1 5.6051 1.5410 -0.0083 42 1 4.1704 -1.0418 -0.8909 43 1 4.1705 -1.0333 0.9009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194101689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:13 Heat of formation + Delta-G solvation = -28.015039 kcal Electronic energy + Delta-G solvation = -24815.580077 eV Core-core repulsion = 21053.905190 eV Total energy + Delta-G solvation = -3761.674887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85615 -40.48351 -38.62641 -36.69909 -35.53529 -34.38790 -33.38452 -33.18642 -31.50460 -29.86419 -28.32405 -27.19066 -26.68146 -23.57993 -22.59937 -22.02482 -21.04501 -20.63785 -20.32892 -18.48942 -17.86734 -17.42164 -16.81110 -16.67900 -16.65535 -15.78673 -15.24206 -14.92528 -14.62341 -14.44231 -14.27762 -14.10911 -14.05122 -13.79854 -13.45903 -13.39597 -13.19323 -12.78477 -12.72743 -12.57328 -12.12433 -11.96816 -11.57544 -11.13606 -11.11057 -10.91659 -10.49402 -10.34102 -10.07580 -9.88615 -9.79124 -9.73170 -9.26652 -9.18201 -8.98117 -8.58501 -7.85737 -6.09256 -4.08339 0.78752 1.00164 2.08072 2.34810 2.48845 3.00817 3.29275 3.37173 3.40966 3.47607 3.76779 3.98315 4.17793 4.41761 4.47578 4.60506 4.72642 4.86437 4.94315 4.97997 5.06209 5.16884 5.24820 5.29667 5.42004 5.59955 5.60963 5.62619 5.65056 5.95349 5.99429 6.09793 6.24004 6.27915 6.39376 6.47930 6.58161 6.72960 6.77444 6.81708 7.18562 7.31947 7.52902 7.71924 7.83646 8.42777 8.47168 8.94205 9.52848 11.03851 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.001955 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.290121 B =14319.557546 C =15083.255116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.552 5.552 3 C 0.118 3.882 4 C -0.115 4.115 5 C -0.115 4.115 6 C 0.154 3.846 7 N -0.688 5.688 8 C 0.700 3.300 9 O -0.576 6.576 10 N -0.734 5.734 11 C 0.131 3.869 12 C -0.113 4.113 13 C -0.011 4.011 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.067 4.067 23 C -0.121 4.121 24 C -0.113 4.113 25 C 0.526 3.474 26 O -0.509 6.509 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.408 0.592 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.264 0.736 41 H 0.150 0.850 42 H 0.124 0.876 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.038 -11.578 -8.485 30.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.276 5.276 3 C 0.022 3.978 4 C -0.136 4.136 5 C -0.136 4.136 6 C 0.058 3.942 7 N -0.336 5.336 8 C 0.400 3.600 9 O -0.453 6.453 10 N -0.388 5.388 11 C 0.008 3.992 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.088 4.088 23 C -0.124 4.124 24 C -0.152 4.152 25 C 0.316 3.684 26 O -0.384 6.384 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.243 0.757 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.168 0.832 42 H 0.142 0.858 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -26.910 -13.138 -7.881 30.965 hybrid contribution 0.189 0.362 0.106 0.422 sum -26.721 -12.775 -7.775 30.622 Atomic orbital electron populations 1.21824 0.77650 1.04502 1.02574 1.45712 1.07185 1.05566 1.69091 1.18142 0.90134 0.87455 1.02042 1.20037 0.99733 0.88755 1.05091 1.20590 0.90464 0.99574 1.02974 1.17261 0.87409 0.87744 1.01764 1.42587 1.16568 1.20119 1.54348 1.15990 0.79861 0.84722 0.79413 1.90922 1.77610 1.25509 1.51275 1.45358 1.19939 1.15197 1.58329 1.21593 0.81778 0.99905 0.95891 1.21717 0.97247 0.94553 1.01621 1.19503 0.92102 0.97868 0.95426 1.21082 1.02016 0.98607 1.34387 0.91017 1.25030 0.96676 0.95911 0.95871 1.69909 1.12596 1.27054 1.44563 0.86777 0.79215 0.83385 0.79930 1.20225 1.21366 1.18869 1.20430 1.00494 0.89751 0.98145 1.19618 0.92217 0.94768 1.05812 1.21061 0.95130 0.92486 1.06561 1.20667 0.89026 0.83908 0.74800 1.90782 1.78997 1.18925 1.49716 0.89243 0.91148 0.91148 0.85382 0.84798 0.75664 0.76861 0.91692 0.91676 0.92065 0.92044 0.96250 0.96677 0.92673 0.83229 0.85797 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.87 59.84 0.65 1.10 16 2 N -0.55 -4.87 3.14 -120.56 -0.38 -5.25 16 3 C 0.12 1.04 6.70 -83.58 -0.56 0.48 16 4 C -0.11 -0.82 9.83 -39.29 -0.39 -1.20 16 5 C -0.11 -0.83 9.94 -39.48 -0.39 -1.22 16 6 C 0.15 1.47 6.31 -83.57 -0.53 0.95 16 7 N -0.69 -6.23 5.35 -14.16 -0.08 -6.30 16 8 C 0.70 8.99 8.41 -86.92 -0.73 8.26 16 9 O -0.58 -9.56 13.79 5.29 0.07 -9.48 16 10 N -0.73 -8.84 5.56 -65.23 -0.36 -9.21 16 11 C 0.13 2.00 5.67 -4.05 -0.02 1.98 16 12 C -0.11 -1.98 5.27 -26.73 -0.14 -2.12 16 13 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 15 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 18 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 22 C -0.07 -0.73 8.69 -39.53 -0.34 -1.07 16 23 C -0.12 -1.17 6.34 -104.38 -0.66 -1.83 16 24 C -0.11 -0.97 6.87 -28.48 -0.20 -1.17 16 25 C 0.53 5.51 8.24 -10.84 -0.09 5.42 16 26 O -0.51 -6.83 17.43 5.54 0.10 -6.73 16 27 H 0.09 0.57 7.57 -51.93 -0.39 0.18 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 31 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.41 2.27 8.84 -40.82 -0.36 1.90 16 33 H 0.40 3.60 8.49 -40.82 -0.35 3.26 16 34 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.15 1.87 6.24 -52.49 -0.33 1.54 16 42 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -35.23 363.22 -9.02 -44.25 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.01 Total: 0.79 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.94 Total: -3.70 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.04 Total: -47.31 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.17 Total: -16.21 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.23 -9.02 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194101689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.239 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds