Wall clock time and date at job start Tue Mar 31 2020 11:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39737 * 123.89130 * 2 1 4 4 C 1.39381 * 130.73931 * 359.36924 * 3 2 1 5 5 C 1.37871 * 120.22021 * 180.37723 * 4 3 2 6 6 C 1.38880 * 120.30047 * 0.25431 * 5 4 3 7 7 N 1.40111 * 120.15852 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99898 * 144.94415 * 7 6 5 9 9 O 1.21591 * 120.00380 * 4.63937 * 8 7 6 10 10 N 1.34778 * 120.00198 * 184.63580 * 8 7 6 11 11 C 1.46490 * 120.00435 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47366 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47241 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47177 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99653 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00049 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00364 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00153 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47522 * 89.99435 * 18 16 14 20 20 H 1.48500 * 109.46921 * 209.99886 * 18 16 14 21 21 H 1.48505 * 109.46809 * 329.99545 * 18 16 14 22 22 C 1.38964 * 119.68171 * 359.97438 * 6 5 4 23 23 C 1.37634 * 119.86118 * 0.02562 * 22 6 5 24 24 C 1.51151 * 132.77412 * 179.97438 * 23 22 6 25 25 C 1.34358 * 123.89103 * 179.75748 * 2 1 3 26 26 O 1.21295 * 126.43284 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47357 * 180.26903 * 1 2 3 28 28 H 1.09004 * 109.47177 * 300.26486 * 1 2 3 29 29 H 1.09003 * 109.47368 * 60.26590 * 1 2 3 30 30 H 1.07992 * 119.88693 * 0.65448 * 4 3 2 31 31 H 1.07997 * 119.84667 * 180.27990 * 5 4 3 32 32 H 0.96999 * 120.00043 * 324.93628 * 7 6 5 33 33 H 0.97009 * 119.99596 * 0.02562 * 10 8 7 34 34 H 1.09011 * 109.47325 * 300.00140 * 11 10 8 35 35 H 1.08995 * 109.47330 * 59.99916 * 11 10 8 36 36 H 1.09005 * 109.46726 * 299.99359 * 12 11 10 37 37 H 1.08995 * 109.47408 * 59.99420 * 12 11 10 38 38 H 1.09005 * 109.47083 * 299.99053 * 13 12 11 39 39 H 1.08995 * 109.47532 * 59.99325 * 13 12 11 40 40 H 0.97001 * 120.00447 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.07569 * 179.97438 * 22 6 5 42 42 H 1.09006 * 110.50101 * 298.66952 * 24 23 22 43 43 H 1.08992 * 110.50543 * 61.36040 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2441 1.1600 0.0000 4 6 1.8748 2.5039 -0.0116 5 6 2.8396 3.4887 -0.0167 6 6 4.1865 3.1501 -0.0156 7 7 5.1645 4.1533 -0.0213 8 6 6.3194 3.9724 0.6495 9 8 6.5487 2.9072 1.1891 10 7 7.2203 4.9722 0.7222 11 6 8.4758 4.7754 1.4508 12 6 9.3122 6.0546 1.3806 13 6 10.6238 5.8488 2.1411 14 6 11.4479 7.1087 2.0714 15 1 11.0737 7.9698 1.5377 16 6 12.6794 7.1619 2.6889 17 7 13.3989 8.2611 2.6277 18 14 13.3269 5.6721 3.6114 19 1 14.1066 4.8151 2.6827 20 1 14.2023 6.1209 4.7239 21 1 12.1862 4.8962 4.1612 22 6 4.5595 1.8115 -0.0088 23 6 3.5936 0.8310 -0.0038 24 6 3.6637 -0.6789 0.0034 25 6 2.2141 -1.1153 0.0047 26 8 1.8057 -2.2574 0.0100 27 1 -0.3634 -1.0276 0.0048 28 1 -0.3634 0.5180 0.8876 29 1 -0.3634 0.5097 -0.8924 30 1 0.8293 2.7746 -0.0121 31 1 2.5466 4.5282 -0.0211 32 1 5.0105 4.9781 -0.5081 33 1 7.0373 5.8222 0.2920 34 1 8.2583 4.5407 2.4929 35 1 9.0315 3.9524 1.0015 36 1 9.5299 6.2896 0.3387 37 1 8.7563 6.8773 1.8302 38 1 10.4066 5.6136 3.1830 39 1 11.1795 5.0262 1.6911 40 1 14.2655 8.2984 3.0619 41 1 5.6051 1.5410 -0.0083 42 1 4.1704 -1.0418 -0.8909 43 1 4.1705 -1.0333 0.9009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194101689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:12 Heat of formation + Delta-G solvation = -52.304843 kcal Electronic energy + Delta-G solvation = -24816.633362 eV Core-core repulsion = 21053.905190 eV Total energy + Delta-G solvation = -3762.728172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.56053 -41.40396 -39.44603 -37.60023 -36.77567 -35.29690 -34.99890 -33.90001 -33.18334 -30.61590 -29.28489 -28.42126 -27.40695 -24.90750 -23.60526 -22.78582 -22.24466 -21.68692 -21.31166 -19.44705 -18.99224 -18.51658 -18.05058 -17.53372 -17.37156 -16.85645 -16.50879 -16.00197 -15.76867 -15.62817 -15.35012 -14.96104 -14.77004 -14.73371 -14.62474 -14.20090 -14.08967 -13.83017 -13.78715 -13.65573 -13.29037 -13.17891 -12.71905 -12.67537 -12.26886 -11.92619 -11.79688 -11.74822 -11.56455 -11.30258 -11.29418 -11.16957 -10.74361 -10.56488 -10.04752 -9.83456 -8.56268 -8.27688 -6.31271 0.08312 0.35773 1.30791 1.38418 1.40286 1.51633 1.58324 1.74069 2.06773 2.37809 2.79334 3.03071 3.08351 3.24425 3.43730 3.84554 4.06610 4.12311 4.18919 4.25764 4.35254 4.40042 4.43044 4.49960 4.54266 4.63197 4.75483 4.88193 4.93474 4.94046 5.00917 5.02891 5.07177 5.33010 5.38614 5.45753 5.54293 5.59573 5.60559 5.67380 5.75805 5.99183 6.08711 6.29390 6.77097 6.78958 7.01876 7.33636 7.49655 8.88521 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.001955 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.290121 B =14319.557546 C =15083.255116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.550 5.550 3 C 0.109 3.891 4 C -0.104 4.104 5 C -0.101 4.101 6 C 0.138 3.862 7 N -0.669 5.669 8 C 0.698 3.302 9 O -0.617 6.617 10 N -0.725 5.725 11 C 0.146 3.854 12 C -0.100 4.100 13 C -0.013 4.013 14 C -0.529 4.529 15 H 0.039 0.961 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.247 1.247 22 C -0.087 4.087 23 C -0.132 4.132 24 C -0.113 4.113 25 C 0.520 3.480 26 O -0.548 6.548 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.427 0.573 33 H 0.414 0.586 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.265 0.735 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.325 -11.528 -8.688 32.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.272 5.272 3 C 0.013 3.987 4 C -0.125 4.125 5 C -0.122 4.122 6 C 0.042 3.958 7 N -0.319 5.319 8 C 0.398 3.602 9 O -0.497 6.497 10 N -0.380 5.380 11 C 0.022 3.978 12 C -0.138 4.138 13 C -0.051 4.051 14 C -0.567 4.567 15 H 0.057 0.943 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.770 3.230 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.170 1.170 22 C -0.108 4.108 23 C -0.135 4.135 24 C -0.152 4.152 25 C 0.311 3.689 26 O -0.426 6.426 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.179 0.821 31 H 0.186 0.814 32 H 0.266 0.734 33 H 0.251 0.749 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -29.258 -13.026 -8.128 33.042 hybrid contribution 0.816 0.445 0.106 0.935 sum -28.442 -12.582 -8.022 32.118 Atomic orbital electron populations 1.22063 0.75898 1.04617 1.04539 1.45806 1.08346 1.05077 1.68011 1.18358 0.89681 0.88219 1.02428 1.20431 1.01401 0.87630 1.03035 1.20918 0.89026 1.01307 1.00983 1.17484 0.88472 0.87232 1.02634 1.42317 1.15237 1.20802 1.53522 1.16104 0.80630 0.84047 0.79395 1.90910 1.78591 1.27113 1.53036 1.45028 1.18892 1.15977 1.58126 1.21176 0.82692 0.98156 0.95794 1.21475 0.95309 0.95850 1.01128 1.19476 0.93886 0.95411 0.96373 1.21476 1.02551 0.99522 1.33150 0.94309 1.25979 0.97199 0.98984 0.97145 1.70056 1.13285 1.29516 1.46262 0.85719 0.79023 0.79675 0.78621 1.19309 1.21223 1.17032 1.20310 0.99549 0.90964 0.99978 1.19645 0.92778 0.94870 1.06197 1.21085 0.94445 0.92350 1.07304 1.20878 0.89853 0.83787 0.74407 1.90753 1.79699 1.20335 1.51820 0.90148 0.89330 0.88958 0.82146 0.81444 0.73430 0.74930 0.92565 0.92373 0.91555 0.91587 0.96090 0.96174 0.92582 0.85680 0.84592 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.87 127.77 1.39 2.06 16 2 N -0.55 -8.93 3.14 -653.97 -2.05 -10.98 16 3 C 0.11 1.70 6.70 38.32 0.26 1.96 16 4 C -0.10 -1.09 9.83 22.46 0.22 -0.87 16 5 C -0.10 -1.08 9.94 22.34 0.22 -0.86 16 6 C 0.14 2.35 6.31 38.14 0.24 2.59 16 7 N -0.67 -10.61 5.35 -316.96 -1.70 -12.30 16 8 C 0.70 16.96 8.41 179.05 1.51 18.46 16 9 O -0.62 -20.33 13.79 -4.00 -0.06 -20.38 16 10 N -0.72 -16.10 5.56 -478.55 -2.66 -18.76 16 11 C 0.15 4.25 5.67 86.38 0.49 4.74 16 12 C -0.10 -3.34 5.27 30.59 0.16 -3.18 16 13 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 14 C -0.53 -29.31 9.66 25.60 0.25 -29.07 16 15 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 16 C 0.00 0.21 5.47 84.65 0.46 0.68 16 17 N -0.95 -58.66 13.96 21.44 0.30 -58.36 16 18 Si 0.95 43.74 27.47 68.60 1.88 45.62 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 22 C -0.09 -1.85 8.69 22.30 0.19 -1.65 16 23 C -0.13 -2.47 6.34 -19.71 -0.12 -2.59 16 24 C -0.11 -1.96 6.87 29.46 0.20 -1.76 16 25 C 0.52 10.88 8.24 87.94 0.72 11.60 16 26 O -0.55 -15.05 17.43 -3.08 -0.05 -15.11 16 27 H 0.08 0.95 7.57 -2.39 -0.02 0.93 16 28 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 31 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.43 3.36 8.84 -92.71 -0.82 2.54 16 33 H 0.41 6.44 8.49 -92.70 -0.79 5.65 16 34 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 39 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.13 3.26 6.24 -2.91 -0.02 3.24 16 42 H 0.14 1.94 8.14 -2.38 -0.02 1.93 16 43 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -78.57 363.22 1.37 -77.20 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.61 Total: 11.44 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 6.31 Total: 1.64 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -6.11 Total: -100.41 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.11 Total: -35.49 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -78.57 1.37 -77.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194101689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.895 kcal (2) G-P(sol) polarization free energy of solvation -78.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds