Wall clock time and date at job start Tue Mar 31 2020 11:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34781 * 119.99659 * 2 1 4 4 O 1.21545 * 120.00122 * 359.97438 * 3 2 1 5 5 C 1.47857 * 119.99770 * 180.02562 * 3 2 1 6 6 C 1.39700 * 120.47853 * 359.97438 * 5 3 2 7 7 N 1.31734 * 120.94205 * 180.02562 * 6 5 3 8 8 C 1.31731 * 122.07436 * 0.02562 * 7 6 5 9 9 C 1.39891 * 120.83891 * 359.97438 * 8 7 6 10 10 C 1.47230 * 120.51765 * 180.02562 * 9 8 7 11 11 C 1.34797 * 119.99859 * 316.39580 * 10 9 8 12 12 C 1.46431 * 119.99898 * 349.01201 * 11 10 9 13 13 O 1.21700 * 120.00240 * 353.21680 * 12 11 10 14 14 N 1.34779 * 120.00151 * 173.21464 * 12 11 10 15 15 C 1.46497 * 120.00365 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47166 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.47273 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47296 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00053 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00220 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99425 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00198 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47251 * 89.99560 * 22 20 18 24 24 H 1.48503 * 109.47364 * 209.99809 * 22 20 18 25 25 H 1.48498 * 109.47247 * 329.99831 * 22 20 18 26 26 C 1.39669 * 120.47648 * 180.27900 * 5 3 2 27 27 H 1.09000 * 109.46618 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47023 * 299.99744 * 1 2 3 29 29 H 1.08999 * 109.46520 * 60.00294 * 1 2 3 30 30 H 0.97001 * 119.99956 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.52835 * 359.97438 * 6 5 3 32 32 H 1.07999 * 119.57951 * 180.02562 * 8 7 6 33 33 H 1.08000 * 120.00313 * 136.39976 * 10 9 8 34 34 H 1.07996 * 119.99935 * 169.01378 * 11 10 9 35 35 H 0.97000 * 119.99428 * 359.97438 * 14 12 11 36 36 H 1.08999 * 109.47025 * 299.99611 * 15 14 12 37 37 H 1.09004 * 109.47115 * 59.99718 * 15 14 12 38 38 H 1.09004 * 109.47351 * 299.99994 * 16 15 14 39 39 H 1.09004 * 109.47235 * 59.99913 * 16 15 14 40 40 H 1.08995 * 109.47004 * 300.00622 * 17 16 15 41 41 H 1.08998 * 109.46510 * 59.99747 * 17 16 15 42 42 H 0.97001 * 119.99677 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.93705 * 359.97438 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6175 1.1673 -0.0006 6 6 4.3261 -0.0366 -0.0006 7 7 5.6434 -0.0473 -0.0006 8 6 6.3519 1.0633 -0.0001 9 6 5.7250 2.3139 -0.0001 10 6 6.5238 3.5506 -0.0001 11 6 7.5996 3.6581 0.8050 12 6 7.8375 2.6567 1.8466 13 8 7.0033 1.7987 2.0678 14 7 8.9804 2.6852 2.5604 15 6 9.2188 1.6831 3.6020 16 6 10.5790 1.9388 4.2541 17 6 10.8276 0.8926 5.3425 18 6 12.1671 1.1448 5.9852 19 1 12.7801 1.9688 5.6505 20 6 12.6107 0.3232 6.9997 21 7 11.8645 -0.6803 7.4068 22 14 14.2714 0.6355 7.7958 23 1 14.1020 1.5542 8.9502 24 1 14.8443 -0.6510 8.2670 25 1 15.1882 1.2516 6.8033 26 6 4.3259 2.3710 0.0053 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.9501 -0.8401 -0.0004 31 1 3.7862 -0.9720 0.0003 32 1 7.4305 1.0076 -0.0005 33 1 6.2479 4.3717 -0.6450 34 1 8.2860 4.4827 0.6819 35 1 9.6455 3.3689 2.3838 36 1 8.4353 1.7502 4.3568 37 1 9.2107 0.6879 3.1574 38 1 11.3623 1.8715 3.4991 39 1 10.5875 2.9341 4.6986 40 1 10.0443 0.9603 6.0973 41 1 10.8190 -0.1027 4.8983 42 1 12.1764 -1.2581 8.1208 43 1 3.8091 3.3193 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255399017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:01 Heat of formation + Delta-G solvation = -23.584717 kcal Electronic energy + Delta-G solvation = -24760.231679 eV Core-core repulsion = 20998.748905 eV Total energy + Delta-G solvation = -3761.482774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90343 -39.82596 -38.91337 -35.71939 -35.07022 -34.34582 -33.36743 -32.51618 -31.43318 -30.27952 -27.39584 -26.96180 -24.93132 -23.80545 -23.28197 -22.06809 -20.97257 -20.65688 -19.48230 -18.33076 -17.15834 -16.95285 -16.86412 -16.45284 -15.68346 -15.60444 -15.50432 -15.18302 -14.63515 -14.50639 -14.33105 -13.86827 -13.81187 -13.55370 -13.31515 -13.14700 -12.90545 -12.64975 -12.34458 -12.30667 -11.86084 -11.76942 -10.92792 -10.77927 -10.67910 -10.59034 -10.54343 -10.12016 -9.92369 -9.86293 -9.55765 -9.51162 -9.40704 -9.15042 -8.80532 -8.52324 -8.39354 -6.03854 -4.07145 0.26031 0.76022 1.48271 2.65990 2.80181 3.24964 3.29298 3.35362 3.37073 3.40356 3.71111 4.04902 4.35029 4.42416 4.51032 4.60011 4.65933 4.76787 4.82413 5.05972 5.10564 5.12205 5.31915 5.34026 5.42390 5.62160 5.65099 5.73043 5.77634 5.91444 5.96003 6.04864 6.11949 6.37188 6.41553 6.55419 6.78244 6.96299 7.05029 7.60847 7.63184 7.72925 7.73068 7.83885 7.94608 8.28733 8.36010 8.99501 9.57150 11.07412 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002057 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.397621 B =13612.004809 C =14435.281385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.568 3.432 4 O -0.538 6.538 5 C -0.208 4.208 6 C 0.144 3.856 7 N -0.492 5.492 8 C 0.211 3.789 9 C -0.126 4.126 10 C -0.029 4.029 11 C -0.197 4.197 12 C 0.530 3.470 13 O -0.540 6.540 14 N -0.715 5.715 15 C 0.116 3.884 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.001 4.001 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.402 0.598 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.518 5.355 -19.961 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.385 5.385 3 C 0.356 3.644 4 O -0.415 6.415 5 C -0.213 4.213 6 C -0.014 4.014 7 N -0.200 5.200 8 C 0.053 3.947 9 C -0.128 4.128 10 C -0.050 4.050 11 C -0.218 4.218 12 C 0.318 3.682 13 O -0.419 6.419 14 N -0.364 5.364 15 C -0.007 4.007 16 C -0.159 4.159 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.027 4.027 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.237 0.763 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.127 4.522 -19.630 27.099 hybrid contribution 1.085 0.859 0.684 1.544 sum -17.042 5.381 -18.945 26.044 Atomic orbital electron populations 1.21568 0.79002 1.02465 1.02529 1.45697 1.08033 1.08570 1.76189 1.18105 0.86812 0.83763 0.75749 1.90768 1.69871 1.31161 1.49742 1.20662 0.93643 0.95642 1.11360 1.22913 0.90442 0.96377 0.91651 1.67634 1.07344 1.31033 1.14036 1.22981 0.99913 0.86339 0.85473 1.19863 0.93478 0.95049 1.04378 1.22182 0.92064 0.94670 0.96074 1.23157 0.99723 1.01418 0.97513 1.18509 0.82096 0.84996 0.82643 1.90847 1.44395 1.37998 1.68682 1.46216 1.19486 1.33197 1.37500 1.21673 0.99154 0.90935 0.88931 1.21895 0.92958 1.01625 0.99431 1.19026 0.96939 0.93206 0.92214 1.21195 1.03132 1.13470 1.18328 0.92639 1.25039 0.97429 0.95128 0.96924 1.69967 1.37392 1.17085 1.28781 0.86572 0.84077 0.77582 0.79625 1.20662 1.21188 1.19890 1.21687 0.92325 0.98199 0.90442 0.90392 0.91989 0.92055 0.76274 0.82971 0.83010 0.84069 0.84370 0.76631 0.91713 0.91569 0.92665 0.92732 0.96322 0.96256 0.92905 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.85 0.64 1.17 16 2 N -0.73 -5.54 5.67 -68.04 -0.39 -5.93 16 3 C 0.57 6.37 7.78 -12.32 -0.10 6.27 16 4 O -0.54 -7.76 16.41 5.33 0.09 -7.67 16 5 C -0.21 -2.33 5.88 -104.88 -0.62 -2.95 16 6 C 0.14 1.55 10.71 -17.05 -0.18 1.36 16 7 N -0.49 -6.52 10.33 -12.51 -0.13 -6.65 16 8 C 0.21 2.70 7.77 -16.98 -0.13 2.57 16 9 C -0.13 -1.42 4.55 -104.95 -0.48 -1.89 16 10 C -0.03 -0.25 9.83 -37.15 -0.37 -0.62 16 11 C -0.20 -1.78 9.91 -37.51 -0.37 -2.15 16 12 C 0.53 7.03 6.79 -12.96 -0.09 6.94 16 13 O -0.54 -9.09 12.14 5.19 0.06 -9.03 16 14 N -0.71 -9.40 5.55 -61.70 -0.34 -9.74 16 15 C 0.12 1.96 5.67 -4.05 -0.02 1.94 16 16 C -0.12 -2.30 5.27 -26.73 -0.14 -2.45 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.00 -0.01 9.48 -38.38 -0.36 -0.37 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.40 1.96 6.88 -40.82 -0.28 1.68 16 31 H 0.15 1.07 6.40 -52.49 -0.34 0.73 16 32 H 0.15 1.90 7.00 -52.49 -0.37 1.54 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.40 4.08 8.45 -40.82 -0.35 3.74 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.14 1.50 7.73 -52.49 -0.41 1.10 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -36.39 370.05 -8.11 -44.50 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.93 Total: 1.61 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.77 Total: -3.03 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.12 Total: -48.33 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.15 Total: -16.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.39 -8.11 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255399017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.919 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds