Wall clock time and date at job start Tue Mar 31 2020 11:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34781 * 119.99659 * 2 1 4 4 O 1.21545 * 120.00122 * 359.97438 * 3 2 1 5 5 C 1.47857 * 119.99770 * 180.02562 * 3 2 1 6 6 C 1.39700 * 120.47853 * 359.97438 * 5 3 2 7 7 N 1.31734 * 120.94205 * 180.02562 * 6 5 3 8 8 C 1.31731 * 122.07436 * 0.02562 * 7 6 5 9 9 C 1.39891 * 120.83891 * 359.97438 * 8 7 6 10 10 C 1.47230 * 120.51765 * 180.02562 * 9 8 7 11 11 C 1.34797 * 119.99859 * 316.39580 * 10 9 8 12 12 C 1.46431 * 119.99898 * 349.01201 * 11 10 9 13 13 O 1.21700 * 120.00240 * 353.21680 * 12 11 10 14 14 N 1.34779 * 120.00151 * 173.21464 * 12 11 10 15 15 C 1.46497 * 120.00365 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47166 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.47273 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47296 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00053 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00220 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99425 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00198 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47251 * 89.99560 * 22 20 18 24 24 H 1.48503 * 109.47364 * 209.99809 * 22 20 18 25 25 H 1.48498 * 109.47247 * 329.99831 * 22 20 18 26 26 C 1.39669 * 120.47648 * 180.27900 * 5 3 2 27 27 H 1.09000 * 109.46618 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47023 * 299.99744 * 1 2 3 29 29 H 1.08999 * 109.46520 * 60.00294 * 1 2 3 30 30 H 0.97001 * 119.99956 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.52835 * 359.97438 * 6 5 3 32 32 H 1.07999 * 119.57951 * 180.02562 * 8 7 6 33 33 H 1.08000 * 120.00313 * 136.39976 * 10 9 8 34 34 H 1.07996 * 119.99935 * 169.01378 * 11 10 9 35 35 H 0.97000 * 119.99428 * 359.97438 * 14 12 11 36 36 H 1.08999 * 109.47025 * 299.99611 * 15 14 12 37 37 H 1.09004 * 109.47115 * 59.99718 * 15 14 12 38 38 H 1.09004 * 109.47351 * 299.99994 * 16 15 14 39 39 H 1.09004 * 109.47235 * 59.99913 * 16 15 14 40 40 H 1.08995 * 109.47004 * 300.00622 * 17 16 15 41 41 H 1.08998 * 109.46510 * 59.99747 * 17 16 15 42 42 H 0.97001 * 119.99677 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.93705 * 359.97438 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6175 1.1673 -0.0006 6 6 4.3261 -0.0366 -0.0006 7 7 5.6434 -0.0473 -0.0006 8 6 6.3519 1.0633 -0.0001 9 6 5.7250 2.3139 -0.0001 10 6 6.5238 3.5506 -0.0001 11 6 7.5996 3.6581 0.8050 12 6 7.8375 2.6567 1.8466 13 8 7.0033 1.7987 2.0678 14 7 8.9804 2.6852 2.5604 15 6 9.2188 1.6831 3.6020 16 6 10.5790 1.9388 4.2541 17 6 10.8276 0.8926 5.3425 18 6 12.1671 1.1448 5.9852 19 1 12.7801 1.9688 5.6505 20 6 12.6107 0.3232 6.9997 21 7 11.8645 -0.6803 7.4068 22 14 14.2714 0.6355 7.7958 23 1 14.1020 1.5542 8.9502 24 1 14.8443 -0.6510 8.2670 25 1 15.1882 1.2516 6.8033 26 6 4.3259 2.3710 0.0053 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.9501 -0.8401 -0.0004 31 1 3.7862 -0.9720 0.0003 32 1 7.4305 1.0076 -0.0005 33 1 6.2479 4.3717 -0.6450 34 1 8.2860 4.4827 0.6819 35 1 9.6455 3.3689 2.3838 36 1 8.4353 1.7502 4.3568 37 1 9.2107 0.6879 3.1574 38 1 11.3623 1.8715 3.4991 39 1 10.5875 2.9341 4.6986 40 1 10.0443 0.9603 6.0973 41 1 10.8190 -0.1027 4.8983 42 1 12.1764 -1.2581 8.1208 43 1 3.8091 3.3193 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255399017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:00 Heat of formation + Delta-G solvation = -50.952747 kcal Electronic energy + Delta-G solvation = -24761.418446 eV Core-core repulsion = 20998.748905 eV Total energy + Delta-G solvation = -3762.669540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78062 -40.81333 -39.84616 -37.09398 -35.87501 -35.33120 -35.07841 -33.39077 -33.10751 -31.22737 -28.70998 -28.01121 -26.03642 -25.01108 -24.36003 -23.18838 -22.32059 -21.79903 -20.47670 -19.21645 -18.53239 -17.99488 -17.83259 -17.72891 -16.77435 -16.62835 -16.45568 -16.39687 -16.34332 -15.55594 -15.30104 -15.05450 -14.70957 -14.45859 -14.24741 -14.15685 -13.88692 -13.78392 -13.74244 -13.46344 -13.23502 -13.04255 -12.75399 -12.55511 -12.37934 -11.68391 -11.66597 -11.47929 -11.37054 -11.23908 -10.98725 -10.78275 -10.56543 -10.38116 -10.22973 -9.97841 -9.38140 -8.20448 -6.32140 -0.56821 -0.09334 0.66490 1.41228 1.42635 1.53638 1.79117 2.11468 2.26976 2.33366 2.43183 2.84122 3.13274 3.27587 3.58554 3.75828 3.78375 3.84238 3.92948 4.17568 4.20750 4.27914 4.31441 4.49748 4.54330 4.61229 4.65342 4.86260 4.92202 4.93483 4.94050 4.99513 5.15564 5.19871 5.29549 5.35173 5.43985 5.51636 5.55782 5.69359 5.83180 6.21057 6.38346 6.63260 6.85581 6.85821 7.06628 7.28827 7.37631 8.91691 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002057 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.397621 B =13612.004809 C =14435.281385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.566 3.434 4 O -0.577 6.577 5 C -0.214 4.214 6 C 0.141 3.859 7 N -0.520 5.520 8 C 0.193 3.807 9 C -0.130 4.130 10 C -0.019 4.019 11 C -0.195 4.195 12 C 0.523 3.477 13 O -0.581 6.581 14 N -0.706 5.706 15 C 0.132 3.868 16 C -0.102 4.102 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.068 0.932 20 C -0.006 4.006 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.259 1.259 26 C -0.012 4.012 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.416 0.584 31 H 0.185 0.815 32 H 0.146 0.854 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.417 0.583 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.068 0.932 40 H -0.011 1.011 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.913 6.974 -21.169 27.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.353 3.647 4 O -0.458 6.458 5 C -0.219 4.219 6 C -0.017 4.017 7 N -0.229 5.229 8 C 0.036 3.964 9 C -0.132 4.132 10 C -0.039 4.039 11 C -0.216 4.216 12 C 0.313 3.687 13 O -0.463 6.463 14 N -0.357 5.357 15 C 0.008 3.992 16 C -0.140 4.140 17 C -0.015 4.015 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.793 3.207 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.183 1.183 26 C -0.037 4.037 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.254 0.746 31 H 0.202 0.798 32 H 0.163 0.837 33 H 0.201 0.799 34 H 0.198 0.802 35 H 0.255 0.745 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.008 0.992 41 H 0.009 0.991 42 H 0.072 0.928 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.506 6.141 -20.867 27.921 hybrid contribution 0.793 0.269 1.041 1.336 sum -16.713 6.410 -19.825 26.711 Atomic orbital electron populations 1.21756 0.77761 1.04676 1.01802 1.45676 1.08896 1.08170 1.74256 1.18171 0.86778 0.84186 0.75579 1.90743 1.70436 1.32623 1.51965 1.20812 0.93904 0.95988 1.11201 1.23360 0.89822 0.97613 0.90867 1.67602 1.08547 1.31757 1.15028 1.23026 0.99862 0.87162 0.86388 1.20118 0.93746 0.95776 1.03572 1.22592 0.90843 0.94330 0.96158 1.23239 1.00799 1.01219 0.96310 1.19292 0.81141 0.85180 0.83042 1.90843 1.45679 1.39884 1.69908 1.45968 1.20372 1.32787 1.36554 1.21160 0.97335 0.91360 0.89350 1.21595 0.94426 0.99992 0.97945 1.18945 0.95481 0.93831 0.93218 1.21688 1.04051 1.13650 1.18458 0.91417 1.26056 1.01714 0.94817 0.97718 1.70119 1.39624 1.18295 1.29559 0.85396 0.79014 0.77526 0.78795 1.19856 1.21071 1.18304 1.21907 0.92596 0.98736 0.90508 0.86728 0.93055 0.92461 0.74627 0.79819 0.83654 0.79903 0.80152 0.74535 0.93765 0.93340 0.91170 0.91377 0.99248 0.99070 0.92829 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.70 127.77 1.37 2.25 16 2 N -0.72 -10.01 5.67 -487.44 -2.76 -12.77 16 3 C 0.57 12.49 7.78 86.79 0.68 13.17 16 4 O -0.58 -16.76 16.41 -3.86 -0.06 -16.82 16 5 C -0.21 -4.76 5.88 -20.03 -0.12 -4.88 16 6 C 0.14 2.99 10.71 85.06 0.91 3.90 16 7 N -0.52 -14.04 10.33 -193.48 -2.00 -16.04 16 8 C 0.19 5.02 7.77 85.11 0.66 5.68 16 9 C -0.13 -2.84 4.55 -20.08 -0.09 -2.93 16 10 C -0.02 -0.28 9.83 23.84 0.23 -0.04 16 11 C -0.20 -2.95 9.91 23.61 0.23 -2.72 16 12 C 0.52 13.38 6.79 86.38 0.59 13.97 16 13 O -0.58 -19.88 12.14 -4.35 -0.05 -19.93 16 14 N -0.71 -17.73 5.55 -467.34 -2.59 -20.33 16 15 C 0.13 4.56 5.67 86.38 0.49 5.05 16 16 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 17 C 0.02 1.19 4.97 29.85 0.15 1.34 16 18 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 19 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 21 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 22 Si 0.97 43.72 29.54 68.60 2.03 45.74 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 26 C -0.01 -0.26 9.48 23.05 0.22 -0.04 16 27 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.42 3.32 6.88 -92.71 -0.64 2.68 16 31 H 0.19 2.37 6.40 -2.91 -0.02 2.36 16 32 H 0.15 3.78 7.00 -2.91 -0.02 3.76 16 33 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.42 7.45 8.45 -92.71 -0.78 6.66 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.15 3.08 7.73 -2.91 -0.02 3.06 16 Total: -1.00 -82.61 370.05 0.64 -81.97 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.38 Total: 13.92 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.17 Total: 1.35 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -7.07 Total: -106.23 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.12 Total: -36.75 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -82.61 0.64 -81.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255399017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.015 kcal (2) G-P(sol) polarization free energy of solvation -82.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds