Wall clock time and date at job start Tue Mar 31 2020 11:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99782 * 2 1 4 4 O 1.21500 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.48332 * 119.99955 * 180.02562 * 3 2 1 6 6 C 1.39307 * 119.57106 * 180.02562 * 5 3 2 7 7 C 1.38450 * 119.18918 * 180.02562 * 6 5 3 8 8 C 1.39871 * 118.35588 * 359.97438 * 7 6 5 9 9 C 1.48009 * 120.45822 * 180.02562 * 8 7 6 10 10 O 1.21532 * 120.00010 * 229.38472 * 9 8 7 11 11 N 1.34777 * 119.99999 * 49.39251 * 9 8 7 12 12 C 1.46502 * 119.99921 * 175.20886 * 11 9 8 13 13 C 1.50701 * 109.46812 * 90.00108 * 12 11 9 14 14 H 1.08000 * 120.00637 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99973 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99863 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47119 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47062 * 119.99806 * 17 15 13 20 20 H 1.48499 * 109.47154 * 239.99901 * 17 15 13 21 21 C 1.46498 * 119.99829 * 355.20872 * 11 9 8 22 22 C 1.53005 * 109.46969 * 263.89507 * 21 11 9 23 23 C 1.53009 * 117.49499 * 243.74719 * 22 21 11 24 24 C 1.52999 * 117.49681 * 175.09187 * 22 21 11 25 25 C 1.39720 * 119.07704 * 0.28167 * 8 7 6 26 26 N 1.31413 * 120.71898 * 359.39891 * 25 8 7 27 27 H 1.09003 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47644 * 299.99765 * 1 2 3 29 29 H 1.09002 * 109.47368 * 60.00147 * 1 2 3 30 30 H 0.96995 * 120.00084 * 180.02562 * 2 1 3 31 31 H 1.07998 * 120.40549 * 0.02562 * 6 5 3 32 32 H 1.07996 * 120.81756 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46945 * 209.99356 * 12 11 9 34 34 H 1.08993 * 109.47324 * 330.00094 * 12 11 9 35 35 H 0.96999 * 120.00204 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47447 * 23.89385 * 21 11 9 37 37 H 1.09002 * 109.47262 * 143.89870 * 21 11 9 38 38 H 1.08993 * 115.55275 * 29.41361 * 22 21 11 39 39 H 1.08989 * 117.50133 * 0.02562 * 23 22 21 40 40 H 1.09006 * 117.49446 * 145.02436 * 23 22 21 41 41 H 1.09009 * 117.49676 * 214.97839 * 24 22 21 42 42 H 1.08993 * 117.50170 * 359.97438 * 24 22 21 43 43 H 1.07999 * 119.64245 * 179.72195 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2194 -0.0005 5 6 3.6222 1.1673 -0.0006 6 6 4.3096 2.3789 0.0000 7 6 5.6941 2.3697 -0.0011 8 6 6.3502 1.1345 -0.0022 9 6 7.8289 1.0704 -0.0028 10 8 8.4060 0.3601 -0.8024 11 7 8.5354 1.7996 0.8835 12 6 9.9918 1.6573 0.9535 13 6 10.6383 2.6400 0.0116 14 1 10.0257 3.3039 -0.5804 15 6 12.0120 2.6910 -0.0954 16 7 12.7581 1.8823 0.6250 17 14 12.8134 3.9086 -1.2635 18 1 11.7619 4.6989 -1.9527 19 1 13.6962 4.8234 -0.4959 20 1 13.6193 3.1720 -2.2701 21 6 7.8469 2.7345 1.7769 22 6 7.8904 4.1406 1.1752 23 6 8.6527 5.2173 1.9502 24 6 7.1229 5.2451 1.9046 25 6 5.5903 -0.0380 -0.0081 26 7 4.2772 0.0130 -0.0008 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.7692 3.3140 0.0012 32 1 6.2535 3.2935 -0.0011 33 1 10.3277 1.8550 1.9715 34 1 10.2719 0.6431 0.6690 35 1 13.7245 1.9183 0.5501 36 1 6.8095 2.4234 1.8989 37 1 8.3413 2.7396 2.7484 38 1 7.9236 4.1853 0.0867 39 1 9.1236 4.9239 2.8883 40 1 9.1871 5.9707 1.3713 41 1 6.6515 6.0167 1.2958 42 1 6.5868 4.9700 2.8128 43 1 6.0875 -0.9967 -0.0135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264079572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:46 Heat of formation + Delta-G solvation = 1.163286 kcal Electronic energy + Delta-G solvation = -26343.636479 eV Core-core repulsion = 22583.226859 eV Total energy + Delta-G solvation = -3760.409620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94104 -39.63145 -38.44993 -37.19264 -34.93994 -34.51519 -33.09163 -32.31173 -31.63336 -28.17871 -27.47552 -26.34128 -24.62500 -23.88082 -22.60380 -22.10957 -21.04991 -20.75126 -19.14376 -18.61191 -17.16641 -16.92146 -16.43732 -15.89344 -15.64047 -15.55987 -15.14938 -15.02652 -14.62316 -14.35860 -14.16584 -13.92618 -13.50185 -13.28189 -13.08812 -12.94146 -12.58164 -12.33815 -12.31274 -12.22428 -11.49586 -11.32547 -11.24564 -10.98544 -10.71588 -10.58011 -10.38366 -10.07950 -10.00129 -9.91842 -9.64774 -9.57389 -9.49431 -9.29651 -9.05476 -8.46725 -7.86126 -6.08184 -4.11272 0.32349 1.06655 2.43805 2.87034 3.20357 3.26894 3.35310 3.38083 3.59001 3.75498 3.93897 4.07365 4.41085 4.60861 4.65552 4.75560 4.89237 4.91662 5.03354 5.09692 5.17999 5.19080 5.26970 5.32116 5.46005 5.57529 5.61834 5.70969 5.79454 5.85056 5.94108 5.95402 6.08502 6.21617 6.35461 6.36250 6.49820 6.92258 7.12389 7.30449 7.39612 7.54219 7.87458 7.91967 8.16741 8.19285 8.73111 8.93590 9.52923 11.00503 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.003313 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.728475 B = 8450.375422 C = 9221.315668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.718 5.718 3 C 0.574 3.426 4 O -0.533 6.533 5 C 0.078 3.922 6 C -0.114 4.114 7 C -0.058 4.058 8 C -0.138 4.138 9 C 0.547 3.453 10 O -0.522 6.522 11 N -0.582 5.582 12 C 0.248 3.752 13 C -0.516 4.516 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.138 3.862 22 C -0.163 4.163 23 C -0.157 4.157 24 C -0.190 4.190 25 C 0.142 3.858 26 N -0.463 5.463 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.414 0.586 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.694 -0.350 3.449 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 C 0.359 3.641 4 O -0.409 6.409 5 C -0.061 4.061 6 C -0.134 4.134 7 C -0.083 4.083 8 C -0.143 4.143 9 C 0.332 3.668 10 O -0.398 6.398 11 N -0.312 5.312 12 C 0.129 3.871 13 C -0.554 4.554 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.013 3.987 22 C -0.182 4.182 23 C -0.194 4.194 24 C -0.227 4.227 25 C -0.019 4.019 26 N -0.174 5.174 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.143 -0.805 3.085 20.394 hybrid contribution 1.380 1.140 -0.667 1.910 sum -18.764 0.335 2.417 18.922 Atomic orbital electron populations 1.21599 0.79178 1.02505 1.02470 1.45632 1.07732 1.09187 1.74369 1.17960 0.85852 0.83981 0.76320 1.90782 1.68909 1.31322 1.49859 1.21125 0.93907 0.90047 1.00976 1.22036 0.94190 0.99334 0.97885 1.22265 0.94070 0.98761 0.93254 1.21560 0.96559 0.95204 1.01014 1.17998 0.85166 0.81555 0.82130 1.90810 1.70586 1.41055 1.37375 1.48203 1.10199 1.38088 1.34755 1.19376 0.71411 0.98707 0.97583 1.21373 0.91306 1.19167 1.23596 0.92285 1.24902 0.97187 0.96021 0.95938 1.69930 1.05242 1.37766 1.40567 0.86486 0.79350 0.80977 0.80868 1.19863 1.21027 1.20947 1.21198 0.96870 0.87130 0.93460 1.22753 1.05182 0.91027 0.99223 1.22881 0.92898 1.01504 1.02131 1.23033 0.95372 1.01617 1.02717 1.22819 0.87955 0.98206 0.92895 1.67526 1.10267 1.28094 1.11547 0.90375 0.91998 0.92019 0.75036 0.83067 0.82469 0.94716 0.93782 0.92794 0.91007 0.90399 0.87452 0.88712 0.88980 0.89077 0.89019 0.81154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.70 59.85 0.64 1.24 16 2 N -0.72 -6.72 5.70 -67.88 -0.39 -7.10 16 3 C 0.57 7.14 7.82 -12.11 -0.09 7.04 16 4 O -0.53 -7.90 16.31 5.37 0.09 -7.82 16 5 C 0.08 0.99 6.75 -82.93 -0.56 0.43 16 6 C -0.11 -1.40 9.62 -39.11 -0.38 -1.77 16 7 C -0.06 -0.76 7.67 -38.89 -0.30 -1.06 16 8 C -0.14 -2.11 4.92 -104.73 -0.52 -2.62 16 9 C 0.55 10.78 7.25 -12.25 -0.09 10.69 16 10 O -0.52 -12.51 16.67 5.34 0.09 -12.42 16 11 N -0.58 -11.46 2.47 -176.11 -0.43 -11.90 16 12 C 0.25 6.08 5.16 -5.19 -0.03 6.05 16 13 C -0.52 -13.78 9.09 -34.44 -0.31 -14.09 16 14 H 0.06 1.58 7.67 -52.49 -0.40 1.18 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 17 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.14 2.10 5.22 -4.04 -0.02 2.08 16 22 C -0.16 -2.37 3.76 -90.61 -0.34 -2.71 16 23 C -0.16 -2.21 10.18 -26.69 -0.27 -2.48 16 24 C -0.19 -2.17 10.25 -26.69 -0.27 -2.44 16 25 C 0.14 1.94 10.89 -17.18 -0.19 1.75 16 26 N -0.46 -5.88 9.52 -9.48 -0.09 -5.97 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.41 3.32 8.15 -40.82 -0.33 2.99 16 31 H 0.15 1.66 7.63 -52.49 -0.40 1.26 16 32 H 0.16 2.00 4.55 -52.49 -0.24 1.76 16 33 H 0.03 0.87 7.95 -51.93 -0.41 0.45 16 34 H 0.04 1.22 7.49 -51.93 -0.39 0.84 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.07 0.94 5.44 -51.93 -0.28 0.66 16 37 H 0.08 1.16 7.71 -51.93 -0.40 0.76 16 38 H 0.11 1.74 7.29 -51.93 -0.38 1.37 16 39 H 0.09 1.32 8.03 -51.94 -0.42 0.90 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.17 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -32.76 366.69 -8.07 -40.83 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.75 Total: 3.85 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.82 Total: 3.69 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.18 Total: -50.01 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.18 Total: -20.24 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.76 -8.07 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264079572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.994 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds