Wall clock time and date at job start Tue Mar 31 2020 11:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99782 * 2 1 4 4 O 1.21500 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.48332 * 119.99955 * 180.02562 * 3 2 1 6 6 C 1.39307 * 119.57106 * 180.02562 * 5 3 2 7 7 C 1.38450 * 119.18918 * 180.02562 * 6 5 3 8 8 C 1.39871 * 118.35588 * 359.97438 * 7 6 5 9 9 C 1.48009 * 120.45822 * 180.02562 * 8 7 6 10 10 O 1.21532 * 120.00010 * 229.38472 * 9 8 7 11 11 N 1.34777 * 119.99999 * 49.39251 * 9 8 7 12 12 C 1.46502 * 119.99921 * 175.20886 * 11 9 8 13 13 C 1.50701 * 109.46812 * 90.00108 * 12 11 9 14 14 H 1.08000 * 120.00637 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99973 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99863 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47119 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47062 * 119.99806 * 17 15 13 20 20 H 1.48499 * 109.47154 * 239.99901 * 17 15 13 21 21 C 1.46498 * 119.99829 * 355.20872 * 11 9 8 22 22 C 1.53005 * 109.46969 * 263.89507 * 21 11 9 23 23 C 1.53009 * 117.49499 * 243.74719 * 22 21 11 24 24 C 1.52999 * 117.49681 * 175.09187 * 22 21 11 25 25 C 1.39720 * 119.07704 * 0.28167 * 8 7 6 26 26 N 1.31413 * 120.71898 * 359.39891 * 25 8 7 27 27 H 1.09003 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47644 * 299.99765 * 1 2 3 29 29 H 1.09002 * 109.47368 * 60.00147 * 1 2 3 30 30 H 0.96995 * 120.00084 * 180.02562 * 2 1 3 31 31 H 1.07998 * 120.40549 * 0.02562 * 6 5 3 32 32 H 1.07996 * 120.81756 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46945 * 209.99356 * 12 11 9 34 34 H 1.08993 * 109.47324 * 330.00094 * 12 11 9 35 35 H 0.96999 * 120.00204 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47447 * 23.89385 * 21 11 9 37 37 H 1.09002 * 109.47262 * 143.89870 * 21 11 9 38 38 H 1.08993 * 115.55275 * 29.41361 * 22 21 11 39 39 H 1.08989 * 117.50133 * 0.02562 * 23 22 21 40 40 H 1.09006 * 117.49446 * 145.02436 * 23 22 21 41 41 H 1.09009 * 117.49676 * 214.97839 * 24 22 21 42 42 H 1.08993 * 117.50170 * 359.97438 * 24 22 21 43 43 H 1.07999 * 119.64245 * 179.72195 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2194 -0.0005 5 6 3.6222 1.1673 -0.0006 6 6 4.3096 2.3789 0.0000 7 6 5.6941 2.3697 -0.0011 8 6 6.3502 1.1345 -0.0022 9 6 7.8289 1.0704 -0.0028 10 8 8.4060 0.3601 -0.8024 11 7 8.5354 1.7996 0.8835 12 6 9.9918 1.6573 0.9535 13 6 10.6383 2.6400 0.0116 14 1 10.0257 3.3039 -0.5804 15 6 12.0120 2.6910 -0.0954 16 7 12.7581 1.8823 0.6250 17 14 12.8134 3.9086 -1.2635 18 1 11.7619 4.6989 -1.9527 19 1 13.6962 4.8234 -0.4959 20 1 13.6193 3.1720 -2.2701 21 6 7.8469 2.7345 1.7769 22 6 7.8904 4.1406 1.1752 23 6 8.6527 5.2173 1.9502 24 6 7.1229 5.2451 1.9046 25 6 5.5903 -0.0380 -0.0081 26 7 4.2772 0.0130 -0.0008 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8400 -0.0004 31 1 3.7692 3.3140 0.0012 32 1 6.2535 3.2935 -0.0011 33 1 10.3277 1.8550 1.9715 34 1 10.2719 0.6431 0.6690 35 1 13.7245 1.9183 0.5501 36 1 6.8095 2.4234 1.8989 37 1 8.3413 2.7396 2.7484 38 1 7.9236 4.1853 0.0867 39 1 9.1236 4.9239 2.8883 40 1 9.1871 5.9707 1.3713 41 1 6.6515 6.0167 1.2958 42 1 6.5868 4.9700 2.8128 43 1 6.0875 -0.9967 -0.0135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264079572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:46 Heat of formation + Delta-G solvation = -20.836766 kcal Electronic energy + Delta-G solvation = -26344.590473 eV Core-core repulsion = 22583.226859 eV Total energy + Delta-G solvation = -3761.363613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07668 -40.84578 -39.64807 -38.46413 -36.13134 -35.78231 -34.77069 -33.74503 -32.75029 -29.87538 -28.45860 -27.69974 -25.94244 -25.06302 -24.17471 -23.12806 -22.02011 -21.97686 -20.54661 -19.54066 -18.66752 -18.47339 -17.91028 -17.39689 -16.63550 -16.51322 -16.42237 -16.26038 -16.13633 -15.62569 -15.30755 -14.98686 -14.77052 -14.63672 -14.23015 -14.19420 -13.79058 -13.67500 -13.56733 -13.30442 -13.07391 -12.96147 -12.71445 -12.57960 -12.25395 -12.22473 -11.60678 -11.58896 -11.30025 -11.15161 -11.12675 -10.70481 -10.63551 -10.58658 -10.41725 -10.11927 -9.56096 -8.19659 -6.30104 -0.77591 0.02153 1.33756 1.36332 1.39194 1.49228 1.80813 2.01205 2.12926 2.40934 2.66885 2.91438 3.00755 3.11786 3.38760 3.64953 3.68391 3.84792 3.91014 3.99108 4.11081 4.20470 4.41459 4.45234 4.53005 4.59046 4.64562 4.75500 4.80043 4.89015 4.90219 4.95948 5.01138 5.14565 5.21150 5.29437 5.32601 5.34412 5.37171 5.56065 5.80681 6.08482 6.24390 6.54158 6.60197 6.76758 7.04295 7.17854 7.39967 8.88549 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.003313 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.728475 B = 8450.375422 C = 9221.315668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.706 5.706 3 C 0.570 3.430 4 O -0.559 6.559 5 C 0.079 3.921 6 C -0.106 4.106 7 C -0.046 4.046 8 C -0.152 4.152 9 C 0.546 3.454 10 O -0.576 6.576 11 N -0.585 5.585 12 C 0.264 3.736 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.958 3.042 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.285 1.285 21 C 0.137 3.863 22 C -0.182 4.182 23 C -0.177 4.177 24 C -0.146 4.146 25 C 0.145 3.855 26 N -0.455 5.455 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.421 0.579 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.027 0.973 34 H 0.002 0.998 35 H 0.265 0.735 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.342 0.867 3.716 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.357 5.357 3 C 0.355 3.645 4 O -0.438 6.438 5 C -0.059 4.059 6 C -0.127 4.127 7 C -0.071 4.071 8 C -0.158 4.158 9 C 0.333 3.667 10 O -0.457 6.457 11 N -0.314 5.314 12 C 0.143 3.857 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.211 1.211 21 C 0.015 3.985 22 C -0.201 4.201 23 C -0.214 4.214 24 C -0.184 4.184 25 C -0.015 4.015 26 N -0.166 5.166 27 H 0.130 0.870 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.258 0.742 31 H 0.188 0.812 32 H 0.182 0.818 33 H 0.045 0.955 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.839 0.409 3.380 23.091 hybrid contribution 2.088 0.707 -0.726 2.320 sum -20.751 1.116 2.654 20.950 Atomic orbital electron populations 1.21823 0.77459 1.04730 1.02171 1.45695 1.08910 1.08594 1.72455 1.17938 0.85585 0.84464 0.76551 1.90773 1.69177 1.32302 1.51536 1.21418 0.94493 0.90221 0.99772 1.22180 0.93478 1.00021 0.96999 1.22273 0.94481 0.98011 0.92379 1.21136 0.93472 0.96903 1.04262 1.18589 0.87028 0.80173 0.80876 1.90768 1.72223 1.43209 1.39509 1.48126 1.08562 1.39101 1.35567 1.18835 0.74593 0.95852 0.96440 1.21587 0.91595 1.19083 1.23557 0.92722 1.25714 0.97905 0.97757 0.97495 1.70039 1.05548 1.39336 1.42074 0.85510 0.78447 0.78917 0.78812 1.19251 1.19779 1.21148 1.21435 0.97742 0.86757 0.92587 1.22607 1.08034 0.91142 0.98331 1.22929 0.95308 1.01357 1.01853 1.23126 0.93351 0.99250 1.02639 1.22898 0.88246 0.98029 0.92360 1.67590 1.09395 1.28093 1.11508 0.86984 0.92178 0.92385 0.74182 0.81229 0.81837 0.95489 0.97955 0.92626 0.88318 0.90134 0.89349 0.89033 0.89816 0.87205 0.86767 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.70 127.77 1.37 2.27 16 2 N -0.71 -11.37 5.70 -486.98 -2.78 -14.14 16 3 C 0.57 12.82 7.82 86.93 0.68 13.50 16 4 O -0.56 -15.37 16.31 -3.72 -0.06 -15.43 16 5 C 0.08 1.83 6.75 41.96 0.28 2.11 16 6 C -0.11 -2.32 9.62 22.58 0.22 -2.11 16 7 C -0.05 -1.12 7.67 22.72 0.17 -0.94 16 8 C -0.15 -4.57 4.92 -19.93 -0.10 -4.67 16 9 C 0.55 22.16 7.25 86.83 0.63 22.79 16 10 O -0.58 -29.06 16.67 -3.82 -0.06 -29.12 16 11 N -0.58 -23.67 2.47 -829.39 -2.05 -25.71 16 12 C 0.26 13.56 5.16 85.63 0.44 14.00 16 13 C -0.52 -28.62 9.09 25.60 0.23 -28.39 16 14 H 0.05 3.00 7.67 -2.91 -0.02 2.98 16 15 C 0.01 0.55 5.46 84.66 0.46 1.01 16 16 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 17 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 C 0.14 4.09 5.22 86.38 0.45 4.54 16 22 C -0.18 -5.09 3.76 -10.79 -0.04 -5.13 16 23 C -0.18 -4.79 10.18 30.62 0.31 -4.48 16 24 C -0.15 -2.87 10.25 30.62 0.31 -2.56 16 25 C 0.14 3.84 10.89 85.11 0.93 4.76 16 26 N -0.45 -10.66 9.52 -183.91 -1.75 -12.41 16 27 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.42 5.60 8.15 -92.71 -0.76 4.84 16 31 H 0.17 3.15 7.63 -2.91 -0.02 3.13 16 32 H 0.16 3.84 4.55 -2.91 -0.01 3.83 16 33 H 0.03 1.42 7.95 -2.39 -0.02 1.40 16 34 H 0.00 0.14 7.49 -2.39 -0.02 0.12 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.10 2.40 5.44 -2.39 -0.01 2.38 16 37 H 0.08 2.35 7.71 -2.39 -0.02 2.33 16 38 H 0.09 2.84 7.29 -2.39 -0.02 2.82 16 39 H 0.09 2.50 8.03 -2.39 -0.02 2.48 16 40 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -73.43 366.69 2.26 -71.17 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.29 Total: 17.21 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 6.35 Total: 16.71 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -6.29 Total: -106.98 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.12 Total: -44.55 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.43 2.26 -71.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264079572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.332 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds