Wall clock time and date at job start Tue Mar 31 2020 11:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99784 * 2 1 4 4 N 1.34773 * 119.99796 * 179.97438 * 2 1 3 5 5 C 1.39934 * 119.99740 * 185.06953 * 4 2 1 6 6 C 1.38942 * 120.03465 * 33.52065 * 5 4 2 7 7 C 1.38135 * 120.07014 * 180.02562 * 6 5 4 8 8 C 1.38182 * 120.14205 * 359.97438 * 7 6 5 9 9 C 1.38907 * 120.06399 * 0.02724 * 8 7 6 10 10 N 1.39929 * 120.03078 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99641 * 144.61245 * 10 9 8 12 12 O 1.21281 * 120.00422 * 5.08746 * 11 10 9 13 13 C 1.50700 * 119.99765 * 185.08411 * 11 10 9 14 14 N 1.46498 * 109.47075 * 180.02562 * 13 11 10 15 15 C 1.36939 * 120.00040 * 270.27407 * 14 13 11 16 16 H 1.08005 * 120.00214 * 191.05283 * 15 14 13 17 17 C 1.38814 * 119.99895 * 11.06201 * 15 14 13 18 18 N 1.31619 * 120.00051 * 26.79306 * 17 15 14 19 19 Si 1.86795 * 119.99728 * 206.79069 * 17 15 14 20 20 H 1.48505 * 109.47098 * 90.00230 * 19 17 15 21 21 H 1.48503 * 109.47341 * 209.99656 * 19 17 15 22 22 H 1.48504 * 109.47461 * 329.99977 * 19 17 15 23 23 C 1.46504 * 120.00270 * 90.00306 * 14 13 11 24 24 C 1.52991 * 117.50070 * 192.62973 * 23 14 13 25 25 C 1.52996 * 117.50190 * 123.96575 * 23 14 13 26 26 C 1.38724 * 120.03595 * 213.78436 * 5 4 2 27 27 H 1.08997 * 109.47002 * 239.99950 * 1 2 3 28 28 H 1.08998 * 109.47609 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46913 * 120.00374 * 1 2 3 30 30 H 0.96994 * 120.00631 * 5.07222 * 4 2 1 31 31 H 1.08003 * 119.96371 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.93224 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.96705 * 180.02562 * 8 7 6 34 34 H 0.97004 * 119.99989 * 324.61995 * 10 9 8 35 35 H 1.09000 * 109.46982 * 60.00313 * 13 11 10 36 36 H 1.08996 * 109.47808 * 300.00602 * 13 11 10 37 37 H 0.97004 * 119.99893 * 185.01627 * 18 17 15 38 38 H 1.09007 * 115.54062 * 338.29958 * 23 14 13 39 39 H 1.09000 * 117.50176 * 359.97438 * 24 23 14 40 40 H 1.09004 * 117.50094 * 145.02088 * 24 23 14 41 41 H 1.09002 * 117.49881 * 214.98413 * 25 23 14 42 42 H 1.08997 * 117.49862 * 359.97438 * 25 23 14 43 43 H 1.08011 * 120.07043 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5761 -1.1695 0.1076 6 6 4.2169 -0.1979 0.8664 7 6 5.5942 -0.1991 0.9721 8 6 6.3390 -1.1663 0.3246 9 6 5.7042 -2.1404 -0.4355 10 7 6.4591 -3.1192 -1.0913 11 6 5.9813 -4.3743 -1.2058 12 8 4.8601 -4.6336 -0.8232 13 6 6.8404 -5.4554 -1.8094 14 7 6.0987 -6.7186 -1.8216 15 6 6.1744 -7.5675 -0.7498 16 1 5.7791 -8.5698 -0.8257 17 6 6.7591 -7.1399 0.4343 18 7 6.7619 -5.8602 0.7422 19 14 7.5418 -8.3806 1.5907 20 1 8.9736 -8.5530 1.2362 21 1 7.4336 -7.8913 2.9886 22 1 6.8407 -9.6838 1.4668 23 6 5.2711 -7.0710 -2.9781 24 6 4.2973 -8.2403 -2.8198 25 6 5.5581 -8.4039 -3.6723 26 6 4.3212 -2.1386 -0.5481 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6988 -2.0056 -0.0734 31 1 3.6376 0.5597 1.3733 32 1 6.0900 0.5569 1.5628 33 1 7.4156 -1.1649 0.4096 34 1 7.3263 -2.8945 -1.4634 35 1 7.7475 -5.5720 -1.2164 36 1 7.1065 -5.1807 -2.8301 37 1 7.2332 -5.5525 1.5323 38 1 4.9569 -6.2352 -3.6033 39 1 4.2725 -8.7477 -1.8555 40 1 3.3424 -8.1741 -3.3413 41 1 5.4322 -8.4452 -4.7542 42 1 6.3628 -9.0184 -3.2689 43 1 3.8256 -2.8928 -1.1417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264240726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:44 Heat of formation + Delta-G solvation = 24.051986 kcal Electronic energy + Delta-G solvation = -26552.579077 eV Core-core repulsion = 22793.161986 eV Total energy + Delta-G solvation = -3759.417091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.38697 -39.22576 -37.72090 -36.72283 -34.83471 -33.58068 -33.27250 -30.73132 -30.65521 -29.44608 -28.25007 -26.53145 -23.98663 -22.48298 -22.42720 -21.49380 -20.50974 -19.92560 -19.37822 -17.95611 -16.96649 -16.51027 -16.06045 -15.79772 -15.76383 -15.36586 -15.04092 -14.45857 -14.21977 -13.89165 -13.80660 -13.49024 -13.07070 -12.94006 -12.85099 -12.58786 -12.43082 -12.21096 -11.86092 -11.63020 -11.34928 -11.15770 -10.87458 -10.74182 -10.61713 -10.39048 -10.32406 -10.04774 -9.86315 -9.85665 -9.46736 -9.33978 -8.65105 -8.37444 -7.94008 -7.40146 -6.95239 -5.93077 -3.21353 1.59511 1.86765 2.62184 3.13414 3.33986 3.42908 3.44227 3.86793 4.02138 4.34479 4.48567 4.65363 4.81040 5.05197 5.08840 5.16043 5.29749 5.34010 5.54380 5.60192 5.65046 5.78111 5.82242 5.90539 5.94711 6.00247 6.07506 6.17992 6.38797 6.44513 6.49189 6.57053 6.68811 6.80698 6.82787 6.88881 6.93034 7.02119 7.11349 7.49643 7.64250 7.71634 8.10751 8.12435 8.38377 9.02024 9.48737 9.71773 10.12037 11.14677 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.003750 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.133248 B = 7465.720515 C = 8271.306639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.532 6.532 4 N -0.670 5.670 5 C 0.155 3.845 6 C -0.153 4.153 7 C -0.086 4.086 8 C -0.171 4.171 9 C 0.199 3.801 10 N -0.692 5.692 11 C 0.526 3.474 12 O -0.502 6.502 13 C 0.166 3.834 14 N -0.538 5.538 15 C -0.252 4.252 16 H 0.082 0.918 17 C 0.004 3.996 18 N -0.887 5.887 19 Si 0.898 3.102 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.130 3.870 24 C -0.199 4.199 25 C -0.222 4.222 26 C -0.149 4.149 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.412 0.588 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.399 0.601 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.254 0.746 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 8.935 -4.395 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.408 6.408 4 N -0.315 5.315 5 C 0.061 3.939 6 C -0.174 4.174 7 C -0.106 4.106 8 C -0.192 4.192 9 C 0.102 3.898 10 N -0.338 5.338 11 C 0.313 3.687 12 O -0.373 6.373 13 C 0.036 3.964 14 N -0.253 5.253 15 C -0.381 4.381 16 H 0.100 0.900 17 C -0.194 4.194 18 N -0.531 5.531 19 Si 0.728 3.272 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.205 1.205 23 C 0.020 3.980 24 C -0.238 4.238 25 C -0.263 4.263 26 C -0.172 4.172 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.248 0.752 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.232 0.768 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.448 9.435 -3.915 11.578 hybrid contribution 0.548 -0.993 0.794 1.384 sum -4.901 8.443 -3.121 10.249 Atomic orbital electron populations 1.21925 0.91111 1.05648 1.04587 1.20938 0.90752 0.83260 0.75408 1.90726 1.70658 1.31257 1.48153 1.43595 1.05682 1.09781 1.72467 1.17532 0.82172 0.97064 0.97130 1.20872 0.94723 1.00455 1.01382 1.20677 0.93184 0.97952 0.98751 1.20900 0.99911 0.97958 1.00469 1.17522 0.90543 0.88960 0.92761 1.44098 1.21876 1.09633 1.58156 1.22314 0.88442 0.80766 0.77143 1.90497 1.20715 1.80002 1.46045 1.20632 0.95241 0.83912 0.96635 1.43534 1.49474 1.17281 1.14961 1.19248 1.35221 0.93391 0.90209 0.89986 1.24682 1.02537 0.95985 0.96224 1.69981 1.42722 1.13407 1.26994 0.86332 0.79820 0.81109 0.79937 1.21486 1.21998 1.20527 1.20904 0.95584 0.89442 0.92039 1.23126 0.92856 1.06243 1.01600 1.23426 1.00049 1.06018 0.96761 1.20962 0.93121 1.00422 1.02673 0.89087 0.88783 0.89178 0.75197 0.85665 0.86120 0.86142 0.76770 0.88208 0.93521 0.93570 0.89309 0.88475 0.90611 0.90628 0.89254 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.32 36.01 0.37 -0.96 16 2 C 0.51 6.57 7.68 -10.99 -0.08 6.48 16 3 O -0.53 -8.92 14.77 5.55 0.08 -8.83 16 4 N -0.67 -9.12 5.34 -9.88 -0.05 -9.18 16 5 C 0.16 2.62 6.27 -83.72 -0.53 2.10 16 6 C -0.15 -2.55 8.65 -39.36 -0.34 -2.89 16 7 C -0.09 -1.33 10.03 -39.64 -0.40 -1.73 16 8 C -0.17 -2.76 9.96 -39.35 -0.39 -3.15 16 9 C 0.20 3.65 6.29 -83.72 -0.53 3.13 16 10 N -0.69 -12.49 5.33 -9.88 -0.05 -12.54 16 11 C 0.53 11.48 5.66 -10.99 -0.06 11.42 16 12 O -0.50 -12.86 13.36 5.56 0.07 -12.78 16 13 C 0.17 3.54 5.48 -5.19 -0.03 3.51 16 14 N -0.54 -12.61 2.37 -167.03 -0.40 -13.00 16 15 C -0.25 -6.56 8.96 -15.06 -0.13 -6.70 16 16 H 0.08 2.14 6.19 -52.48 -0.32 1.82 16 17 C 0.00 0.11 4.81 -17.43 -0.08 0.02 16 18 N -0.89 -24.01 8.94 55.49 0.50 -23.51 16 19 Si 0.90 21.16 29.63 -169.99 -5.04 16.12 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.13 2.65 6.59 -67.94 -0.45 2.20 16 24 C -0.20 -3.83 9.77 -26.70 -0.26 -4.09 16 25 C -0.22 -3.97 10.20 -26.70 -0.27 -4.25 16 26 C -0.15 -2.78 8.61 -39.21 -0.34 -3.11 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.41 4.65 8.82 -40.82 -0.36 4.29 16 31 H 0.13 2.06 6.42 -52.48 -0.34 1.73 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.40 5.78 8.82 -40.82 -0.36 5.42 16 35 H 0.10 2.26 6.57 -51.93 -0.34 1.92 16 36 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.10 2.07 6.35 -51.93 -0.33 1.74 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 43 H 0.14 2.80 6.25 -52.48 -0.33 2.47 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -33.48 359.26 -8.73 -42.22 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.74 Total: 14.10 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -3.52 Total: 1.99 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.01 Total: -58.23 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.16 Total: -21.62 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.04 Total: 16.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.48 -8.73 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264240726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.267 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds