Wall clock time and date at job start Tue Mar 31 2020 11:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99784 * 2 1 4 4 N 1.34773 * 119.99796 * 179.97438 * 2 1 3 5 5 C 1.39934 * 119.99740 * 185.06953 * 4 2 1 6 6 C 1.38942 * 120.03465 * 33.52065 * 5 4 2 7 7 C 1.38135 * 120.07014 * 180.02562 * 6 5 4 8 8 C 1.38182 * 120.14205 * 359.97438 * 7 6 5 9 9 C 1.38907 * 120.06399 * 0.02724 * 8 7 6 10 10 N 1.39929 * 120.03078 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99641 * 144.61245 * 10 9 8 12 12 O 1.21281 * 120.00422 * 5.08746 * 11 10 9 13 13 C 1.50700 * 119.99765 * 185.08411 * 11 10 9 14 14 N 1.46498 * 109.47075 * 180.02562 * 13 11 10 15 15 C 1.36939 * 120.00040 * 270.27407 * 14 13 11 16 16 H 1.08005 * 120.00214 * 191.05283 * 15 14 13 17 17 C 1.38814 * 119.99895 * 11.06201 * 15 14 13 18 18 N 1.31619 * 120.00051 * 26.79306 * 17 15 14 19 19 Si 1.86795 * 119.99728 * 206.79069 * 17 15 14 20 20 H 1.48505 * 109.47098 * 90.00230 * 19 17 15 21 21 H 1.48503 * 109.47341 * 209.99656 * 19 17 15 22 22 H 1.48504 * 109.47461 * 329.99977 * 19 17 15 23 23 C 1.46504 * 120.00270 * 90.00306 * 14 13 11 24 24 C 1.52991 * 117.50070 * 192.62973 * 23 14 13 25 25 C 1.52996 * 117.50190 * 123.96575 * 23 14 13 26 26 C 1.38724 * 120.03595 * 213.78436 * 5 4 2 27 27 H 1.08997 * 109.47002 * 239.99950 * 1 2 3 28 28 H 1.08998 * 109.47609 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46913 * 120.00374 * 1 2 3 30 30 H 0.96994 * 120.00631 * 5.07222 * 4 2 1 31 31 H 1.08003 * 119.96371 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.93224 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.96705 * 180.02562 * 8 7 6 34 34 H 0.97004 * 119.99989 * 324.61995 * 10 9 8 35 35 H 1.09000 * 109.46982 * 60.00313 * 13 11 10 36 36 H 1.08996 * 109.47808 * 300.00602 * 13 11 10 37 37 H 0.97004 * 119.99893 * 185.01627 * 18 17 15 38 38 H 1.09007 * 115.54062 * 338.29958 * 23 14 13 39 39 H 1.09000 * 117.50176 * 359.97438 * 24 23 14 40 40 H 1.09004 * 117.50094 * 145.02088 * 24 23 14 41 41 H 1.09002 * 117.49881 * 214.98413 * 25 23 14 42 42 H 1.08997 * 117.49862 * 359.97438 * 25 23 14 43 43 H 1.08011 * 120.07043 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5761 -1.1695 0.1076 6 6 4.2169 -0.1979 0.8664 7 6 5.5942 -0.1991 0.9721 8 6 6.3390 -1.1663 0.3246 9 6 5.7042 -2.1404 -0.4355 10 7 6.4591 -3.1192 -1.0913 11 6 5.9813 -4.3743 -1.2058 12 8 4.8601 -4.6336 -0.8232 13 6 6.8404 -5.4554 -1.8094 14 7 6.0987 -6.7186 -1.8216 15 6 6.1744 -7.5675 -0.7498 16 1 5.7791 -8.5698 -0.8257 17 6 6.7591 -7.1399 0.4343 18 7 6.7619 -5.8602 0.7422 19 14 7.5418 -8.3806 1.5907 20 1 8.9736 -8.5530 1.2362 21 1 7.4336 -7.8913 2.9886 22 1 6.8407 -9.6838 1.4668 23 6 5.2711 -7.0710 -2.9781 24 6 4.2973 -8.2403 -2.8198 25 6 5.5581 -8.4039 -3.6723 26 6 4.3212 -2.1386 -0.5481 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6988 -2.0056 -0.0734 31 1 3.6376 0.5597 1.3733 32 1 6.0900 0.5569 1.5628 33 1 7.4156 -1.1649 0.4096 34 1 7.3263 -2.8945 -1.4634 35 1 7.7475 -5.5720 -1.2164 36 1 7.1065 -5.1807 -2.8301 37 1 7.2332 -5.5525 1.5323 38 1 4.9569 -6.2352 -3.6033 39 1 4.2725 -8.7477 -1.8555 40 1 3.3424 -8.1741 -3.3413 41 1 5.4322 -8.4452 -4.7542 42 1 6.3628 -9.0184 -3.2689 43 1 3.8256 -2.8928 -1.1417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264240726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:43 Heat of formation + Delta-G solvation = 2.324202 kcal Electronic energy + Delta-G solvation = -26553.521264 eV Core-core repulsion = 22793.161986 eV Total energy + Delta-G solvation = -3760.359279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60316 -40.65486 -39.18494 -38.27521 -36.12651 -35.25226 -34.80022 -32.48621 -31.72778 -30.82513 -29.37160 -28.23580 -25.75952 -23.84971 -23.62869 -22.98401 -21.88296 -21.52106 -20.85386 -19.26974 -18.30704 -18.01229 -17.58015 -17.45225 -17.13163 -16.55977 -16.33454 -16.06457 -15.87193 -15.49359 -15.00710 -14.84615 -14.57811 -14.39405 -14.15250 -13.88123 -13.54653 -13.41414 -13.19846 -13.09473 -12.83440 -12.71650 -12.48781 -12.37268 -12.26382 -12.08295 -11.89468 -11.68791 -11.59022 -11.00896 -11.00369 -10.75048 -10.37281 -10.23017 -9.27227 -8.82227 -8.71753 -7.89061 -5.17459 0.32856 0.51430 1.45782 1.49501 1.55829 1.57575 2.09304 2.29804 2.46203 2.66548 3.01692 3.12930 3.42964 3.50546 3.77854 4.06596 4.26417 4.27456 4.34316 4.39438 4.45212 4.46735 4.50096 4.61527 4.62642 4.65694 4.79572 4.92203 4.95727 4.98922 5.05494 5.18230 5.31829 5.36504 5.38477 5.51120 5.51547 5.55423 5.70122 5.80822 6.22689 6.26801 6.43581 6.88838 7.08697 7.12177 7.77553 7.95630 8.22786 9.14926 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.003750 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.133248 B = 7465.720515 C = 8271.306639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.668 5.668 5 C 0.149 3.851 6 C -0.163 4.163 7 C -0.081 4.081 8 C -0.171 4.171 9 C 0.176 3.824 10 N -0.679 5.679 11 C 0.528 3.472 12 O -0.547 6.547 13 C 0.166 3.834 14 N -0.555 5.555 15 C -0.254 4.254 16 H 0.073 0.927 17 C -0.041 4.041 18 N -0.904 5.904 19 Si 0.952 3.048 20 H -0.282 1.282 21 H -0.306 1.306 22 H -0.279 1.279 23 C 0.105 3.895 24 C -0.203 4.203 25 C -0.192 4.192 26 C -0.168 4.168 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.422 0.578 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.415 0.585 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.244 0.756 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 9.348 -5.196 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.295 3.705 3 O -0.453 6.453 4 N -0.314 5.314 5 C 0.054 3.946 6 C -0.184 4.184 7 C -0.100 4.100 8 C -0.192 4.192 9 C 0.079 3.921 10 N -0.326 5.326 11 C 0.316 3.684 12 O -0.421 6.421 13 C 0.036 3.964 14 N -0.270 5.270 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.237 4.237 18 N -0.549 5.549 19 Si 0.781 3.219 20 H -0.208 1.208 21 H -0.234 1.234 22 H -0.205 1.205 23 C -0.004 4.004 24 C -0.242 4.242 25 C -0.233 4.233 26 C -0.191 4.191 27 H 0.132 0.868 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.259 0.741 31 H 0.144 0.856 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.252 0.748 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.094 0.906 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.676 9.843 -4.757 12.318 hybrid contribution 0.557 -1.083 0.992 1.571 sum -5.119 8.760 -3.765 10.822 Atomic orbital electron populations 1.21960 0.86607 1.06803 1.06720 1.21930 0.92734 0.82117 0.73724 1.90699 1.71955 1.32556 1.50084 1.43710 1.04610 1.10830 1.72214 1.17692 0.83785 0.96538 0.96588 1.21061 0.95543 1.00367 1.01472 1.21069 0.92794 0.98061 0.98072 1.21147 1.01177 0.97194 0.99665 1.17799 0.90718 0.89706 0.93844 1.43778 1.22417 1.08712 1.57704 1.22313 0.87784 0.81778 0.76478 1.90473 1.22490 1.81045 1.48099 1.20665 0.94200 0.83280 0.98304 1.43675 1.50473 1.17839 1.15046 1.19376 1.34424 0.93542 0.90976 0.90884 1.25232 1.03677 0.97236 0.97532 1.70135 1.43468 1.14329 1.27012 0.85503 0.79295 0.79371 0.77686 1.20826 1.23350 1.20474 1.21208 0.96497 0.90802 0.91879 1.23122 0.94599 1.05360 1.01117 1.23382 0.98417 1.03073 0.98384 1.20889 0.93684 1.00834 1.03719 0.86843 0.88147 0.86875 0.74061 0.85618 0.82891 0.83797 0.74845 0.89852 0.89868 0.94586 0.87897 0.91214 0.88154 0.87077 0.90584 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.32 71.24 0.74 -1.39 16 2 C 0.50 12.64 7.68 87.66 0.67 13.31 16 3 O -0.57 -19.13 14.77 -3.04 -0.04 -19.17 16 4 N -0.67 -18.11 5.34 -303.56 -1.62 -19.73 16 5 C 0.15 5.09 6.27 38.13 0.24 5.33 16 6 C -0.16 -5.36 8.65 22.41 0.19 -5.17 16 7 C -0.08 -2.37 10.03 22.23 0.22 -2.15 16 8 C -0.17 -5.31 9.96 22.42 0.22 -5.09 16 9 C 0.18 6.46 6.29 38.13 0.24 6.70 16 10 N -0.68 -24.52 5.33 -303.56 -1.62 -26.14 16 11 C 0.53 23.32 5.66 87.66 0.50 23.81 16 12 O -0.55 -28.76 13.36 -3.03 -0.04 -28.80 16 13 C 0.17 7.03 5.48 85.63 0.47 7.50 16 14 N -0.55 -26.00 2.37 -682.35 -1.62 -27.62 16 15 C -0.25 -13.35 8.96 84.03 0.75 -12.60 16 16 H 0.07 3.89 6.19 -2.91 -0.02 3.87 16 17 C -0.04 -2.18 4.81 84.86 0.41 -1.77 16 18 N -0.90 -49.81 8.94 21.65 0.19 -49.62 16 19 Si 0.95 44.23 29.63 68.60 2.03 46.26 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 C 0.10 4.14 6.59 44.99 0.30 4.44 16 24 C -0.20 -7.59 9.77 30.62 0.30 -7.29 16 25 C -0.19 -6.47 10.20 30.62 0.31 -6.16 16 26 C -0.17 -6.43 8.61 22.51 0.19 -6.24 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 29 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.42 9.49 8.82 -92.71 -0.82 8.67 16 31 H 0.13 4.10 6.42 -2.91 -0.02 4.08 16 32 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 34 H 0.41 11.76 8.82 -92.71 -0.82 10.95 16 35 H 0.08 3.80 6.57 -2.39 -0.02 3.79 16 36 H 0.08 2.83 8.07 -2.39 -0.02 2.82 16 37 H 0.24 13.48 8.32 -92.71 -0.77 12.71 16 38 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 39 H 0.07 2.99 6.35 -2.39 -0.02 2.98 16 40 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.12 5.00 6.25 -2.90 -0.02 4.98 16 Total: -1.00 -74.33 359.26 2.46 -71.87 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.57 Total: 39.72 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.76 Total: 13.23 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -4.67 Total: -123.11 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.09 Total: -47.97 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -74.33 2.46 -71.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264240726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.193 kcal (2) G-P(sol) polarization free energy of solvation -74.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds