Wall clock time and date at job start Tue Mar 31 2020 11:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34783 * 119.99957 * 2 1 4 4 O 1.21579 * 120.00236 * 180.02562 * 3 2 1 5 5 N 1.34776 * 119.99463 * 0.02562 * 3 2 1 6 6 C 1.39250 * 119.99806 * 185.13240 * 5 3 2 7 7 C 1.39475 * 119.83238 * 214.21116 * 6 5 3 8 8 C 1.36374 * 120.16688 * 179.71425 * 7 6 5 9 9 C 1.40864 * 119.82862 * 0.57880 * 8 7 6 10 10 C 1.41158 * 120.16752 * 179.67275 * 9 8 7 11 11 H 1.08000 * 120.00110 * 205.36275 * 10 9 8 12 12 C 1.39895 * 119.99675 * 25.36877 * 10 9 8 13 13 N 1.30878 * 120.00224 * 16.82741 * 12 10 9 14 14 Si 1.86803 * 119.99856 * 196.82887 * 12 10 9 15 15 H 1.48494 * 109.47325 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47219 * 120.00174 * 14 12 10 17 17 H 1.48504 * 109.46878 * 240.00045 * 14 12 10 18 18 C 1.40864 * 119.67195 * 359.69534 * 9 8 7 19 19 C 1.36380 * 119.82951 * 359.97438 * 18 9 8 20 20 C 1.46502 * 120.00471 * 180.02562 * 2 1 3 21 21 H 1.08997 * 110.43232 * 179.29439 * 20 2 1 22 22 C 1.54625 * 110.48193 * 301.83765 * 20 2 1 23 23 C 1.54485 * 101.76288 * 93.88293 * 22 20 2 24 24 N 1.46762 * 105.47594 * 25.40993 * 23 22 20 25 25 C 1.46495 * 124.34867 * 162.96872 * 24 23 22 26 26 C 1.34747 * 111.35134 * 343.02355 * 24 23 22 27 27 O 1.21276 * 125.12375 * 180.38463 * 26 24 23 28 28 H 1.09002 * 109.47188 * 90.00263 * 1 2 3 29 29 H 1.08998 * 109.46511 * 209.99608 * 1 2 3 30 30 H 1.08997 * 109.47111 * 329.99527 * 1 2 3 31 31 H 0.97001 * 120.00244 * 5.13758 * 5 3 2 32 32 H 1.08003 * 119.91858 * 0.02562 * 7 6 5 33 33 H 1.08005 * 120.08589 * 180.25321 * 8 7 6 34 34 H 0.97002 * 120.00454 * 179.97438 * 13 12 10 35 35 H 1.08006 * 120.08829 * 179.97438 * 18 9 8 36 36 H 1.08000 * 119.91416 * 179.97438 * 19 18 9 37 37 H 1.09001 * 110.96994 * 211.99380 * 22 20 2 38 38 H 1.09000 * 110.97415 * 335.72595 * 22 20 2 39 39 H 1.08999 * 110.24580 * 144.41879 * 23 22 20 40 40 H 1.08997 * 110.24264 * 266.41054 * 23 22 20 41 41 H 1.09003 * 109.47074 * 90.00435 * 25 24 23 42 42 H 1.09005 * 109.47357 * 210.00210 * 25 24 23 43 43 H 1.09001 * 109.47357 * 330.01105 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3547 1.1673 -0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1568 3.5380 -0.1074 7 6 1.6897 4.6692 0.5616 8 6 2.3653 5.8500 0.4654 9 6 3.5307 5.9283 -0.3219 10 6 4.2317 7.1486 -0.4320 11 1 4.8428 7.3438 -1.3009 12 6 4.1348 8.1050 0.5843 13 7 3.6822 7.7631 1.7638 14 14 4.6514 9.8703 0.2579 15 1 5.1243 9.9965 -1.1440 16 1 3.4921 10.7731 0.4730 17 1 5.7490 10.2444 1.1856 18 6 3.9930 4.7830 -0.9992 19 6 3.3106 3.6074 -0.8880 20 6 2.1976 -1.2687 -0.0006 21 1 3.2723 -1.0875 -0.0131 22 6 1.8064 -2.1199 1.2296 23 6 0.6810 -3.0076 0.6534 24 7 0.9427 -3.0849 -0.7886 25 6 0.3591 -4.0886 -1.6819 26 6 1.7896 -2.1151 -1.1862 27 8 2.1691 -1.9441 -2.3253 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.4978 2.3360 0.0761 32 1 0.7936 4.6087 1.1614 33 1 2.0047 6.7241 0.9873 34 1 3.6154 8.4261 2.4686 35 1 4.8856 4.8355 -1.6050 36 1 3.6636 2.7285 -1.4070 37 1 2.6469 -2.7261 1.5677 38 1 1.4326 -1.4901 2.0369 39 1 0.7201 -4.0021 1.0978 40 1 -0.2912 -2.5500 0.8363 41 1 -0.5836 -3.7149 -2.0818 42 1 1.0479 -4.2889 -2.5027 43 1 0.1787 -5.0087 -1.1261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265719518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:04 Heat of formation + Delta-G solvation = -13.245508 kcal Electronic energy + Delta-G solvation = -26231.599802 eV Core-core repulsion = 22470.565370 eV Total energy + Delta-G solvation = -3761.034432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.15118 -39.63429 -37.47091 -36.72035 -35.19718 -34.49011 -33.05014 -31.85708 -29.52239 -28.82883 -28.19669 -27.11445 -26.08819 -24.67916 -22.44176 -21.44754 -20.81175 -19.87365 -19.22819 -18.27951 -17.36147 -17.18168 -16.72826 -16.19668 -15.75313 -15.33973 -15.06982 -14.74634 -14.18671 -13.94627 -13.88380 -13.55710 -13.34494 -13.08238 -12.97815 -12.77760 -12.69104 -12.63010 -12.52892 -12.03494 -11.85753 -11.71068 -11.53814 -11.25730 -11.10492 -10.95420 -10.69782 -10.26397 -10.00897 -9.56022 -9.49827 -9.15917 -9.04067 -8.89250 -8.61998 -7.48847 -6.91773 -6.69353 -4.24795 2.05820 2.63132 2.71689 3.05663 3.09923 3.12197 3.16111 3.18514 3.63491 3.96816 4.02852 4.18847 4.31761 4.52438 4.61015 4.67869 4.77134 4.90512 5.03947 5.08252 5.26615 5.37138 5.38669 5.44676 5.56574 5.66342 5.74875 6.15903 6.22098 6.32398 6.47575 6.74277 6.79985 6.82310 7.08099 7.12670 7.29728 7.36507 7.66167 7.87207 7.93368 7.98583 8.09527 8.33595 8.43672 8.65129 8.93239 8.93863 9.10481 10.22598 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038534 B = 0.002524 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.453391 B =11092.192331 C =11341.415886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.621 5.621 3 C 0.700 3.300 4 O -0.569 6.569 5 N -0.661 5.661 6 C 0.011 3.989 7 C -0.114 4.114 8 C -0.153 4.153 9 C 0.104 3.896 10 C -0.457 4.457 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.795 5.795 14 Si 0.908 3.092 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.275 1.275 18 C -0.213 4.213 19 C -0.075 4.075 20 C 0.131 3.869 21 H 0.136 0.864 22 C -0.146 4.146 23 C 0.100 3.900 24 N -0.627 5.627 25 C 0.097 3.903 26 C 0.510 3.490 27 O -0.512 6.512 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.391 0.609 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.279 0.721 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 -19.447 1.845 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.360 5.360 3 C 0.402 3.598 4 O -0.445 6.445 5 N -0.308 5.308 6 C -0.082 4.082 7 C -0.135 4.135 8 C -0.172 4.172 9 C 0.101 3.899 10 C -0.487 4.487 11 H 0.096 0.904 12 C -0.143 4.143 13 N -0.420 5.420 14 Si 0.732 3.268 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.201 1.201 18 C -0.233 4.233 19 C -0.096 4.096 20 C 0.023 3.977 21 H 0.154 0.846 22 C -0.185 4.185 23 C -0.023 4.023 24 N -0.363 5.363 25 C -0.045 4.045 26 C 0.295 3.705 27 O -0.384 6.384 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.226 0.774 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.305 -19.303 1.380 21.925 hybrid contribution -0.485 0.617 0.128 0.795 sum -10.791 -18.686 1.509 21.630 Atomic orbital electron populations 1.21873 0.80088 1.03200 1.01922 1.46722 1.05852 1.03678 1.79794 1.15882 0.85453 0.80097 0.78349 1.90923 1.11318 1.85361 1.56858 1.42227 1.08978 1.03651 1.75961 1.16969 0.99861 0.83820 1.07551 1.20172 1.00125 0.93439 0.99743 1.20873 0.95921 0.96548 1.03906 1.17661 0.90454 0.91913 0.89839 1.19578 1.25364 0.99331 1.04437 0.90368 1.25915 0.93377 1.00881 0.94162 1.69857 1.34912 1.35501 1.01776 0.86269 0.78874 0.81803 0.79817 1.18411 1.19773 1.20053 1.20660 1.01466 0.92702 1.08475 1.20275 0.94937 0.97152 0.97198 1.21446 1.00750 0.82915 0.92622 0.84615 1.23048 0.99243 0.98348 0.97894 1.22236 0.98959 1.01142 0.79913 1.48267 1.47089 1.31541 1.09432 1.21539 0.98578 0.90439 0.93949 1.21336 0.78169 0.80949 0.90038 1.90743 1.55893 1.70481 1.21313 0.92852 0.90619 0.90879 0.77417 0.89285 0.86075 0.91009 0.88692 0.87987 0.88600 0.88216 0.90046 0.90788 0.92614 0.90696 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.50 59.85 0.57 1.26 16 2 N -0.62 -8.60 2.81 -179.69 -0.51 -9.10 16 3 C 0.70 13.22 8.00 -86.91 -0.70 12.52 16 4 O -0.57 -13.18 13.43 5.30 0.07 -13.11 16 5 N -0.66 -12.29 5.19 -14.10 -0.07 -12.36 16 6 C 0.01 0.24 6.27 -83.57 -0.52 -0.28 16 7 C -0.11 -2.65 9.89 -39.79 -0.39 -3.05 16 8 C -0.15 -3.97 8.63 -39.26 -0.34 -4.31 16 9 C 0.10 2.84 5.57 -106.80 -0.59 2.25 16 10 C -0.46 -12.35 9.04 -37.85 -0.34 -12.69 16 11 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 12 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 13 N -0.79 -20.71 10.95 55.55 0.61 -20.10 16 14 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 C -0.21 -5.59 9.74 -39.26 -0.38 -5.97 16 19 C -0.08 -1.90 8.57 -39.79 -0.34 -2.24 16 20 C 0.13 1.65 3.42 -67.94 -0.23 1.42 16 21 H 0.14 2.05 6.97 -51.93 -0.36 1.68 16 22 C -0.15 -1.09 6.38 -25.10 -0.16 -1.25 16 23 C 0.10 0.57 6.60 -3.12 -0.02 0.55 16 24 N -0.63 -5.59 3.34 -180.19 -0.60 -6.19 16 25 C 0.10 0.65 10.97 59.84 0.66 1.31 16 26 C 0.51 6.80 7.10 -10.71 -0.08 6.73 16 27 O -0.51 -9.23 17.61 5.56 0.10 -9.14 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.51 4.73 -51.93 -0.25 0.26 16 30 H 0.07 0.61 6.29 -51.93 -0.33 0.29 16 31 H 0.39 5.74 6.51 -40.82 -0.27 5.47 16 32 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.12 3.21 6.18 -52.48 -0.32 2.89 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 35 H 0.09 2.38 8.06 -52.48 -0.42 1.96 16 36 H 0.10 2.59 6.47 -52.49 -0.34 2.25 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.33 6.16 -51.93 -0.32 0.01 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -35.11 351.41 -8.63 -43.73 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.52 Total: 9.12 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.97 Total: -1.97 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.57 Total: -47.76 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.17 Total: -22.25 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.11 -8.63 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265719518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.489 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds