Wall clock time and date at job start Tue Mar 31 2020 11:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34783 * 119.99957 * 2 1 4 4 O 1.21579 * 120.00236 * 180.02562 * 3 2 1 5 5 N 1.34776 * 119.99463 * 0.02562 * 3 2 1 6 6 C 1.39250 * 119.99806 * 185.13240 * 5 3 2 7 7 C 1.39475 * 119.83238 * 214.21116 * 6 5 3 8 8 C 1.36374 * 120.16688 * 179.71425 * 7 6 5 9 9 C 1.40864 * 119.82862 * 0.57880 * 8 7 6 10 10 C 1.41158 * 120.16752 * 179.67275 * 9 8 7 11 11 H 1.08000 * 120.00110 * 205.36275 * 10 9 8 12 12 C 1.39895 * 119.99675 * 25.36877 * 10 9 8 13 13 N 1.30878 * 120.00224 * 16.82741 * 12 10 9 14 14 Si 1.86803 * 119.99856 * 196.82887 * 12 10 9 15 15 H 1.48494 * 109.47325 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47219 * 120.00174 * 14 12 10 17 17 H 1.48504 * 109.46878 * 240.00045 * 14 12 10 18 18 C 1.40864 * 119.67195 * 359.69534 * 9 8 7 19 19 C 1.36380 * 119.82951 * 359.97438 * 18 9 8 20 20 C 1.46502 * 120.00471 * 180.02562 * 2 1 3 21 21 H 1.08997 * 110.43232 * 179.29439 * 20 2 1 22 22 C 1.54625 * 110.48193 * 301.83765 * 20 2 1 23 23 C 1.54485 * 101.76288 * 93.88293 * 22 20 2 24 24 N 1.46762 * 105.47594 * 25.40993 * 23 22 20 25 25 C 1.46495 * 124.34867 * 162.96872 * 24 23 22 26 26 C 1.34747 * 111.35134 * 343.02355 * 24 23 22 27 27 O 1.21276 * 125.12375 * 180.38463 * 26 24 23 28 28 H 1.09002 * 109.47188 * 90.00263 * 1 2 3 29 29 H 1.08998 * 109.46511 * 209.99608 * 1 2 3 30 30 H 1.08997 * 109.47111 * 329.99527 * 1 2 3 31 31 H 0.97001 * 120.00244 * 5.13758 * 5 3 2 32 32 H 1.08003 * 119.91858 * 0.02562 * 7 6 5 33 33 H 1.08005 * 120.08589 * 180.25321 * 8 7 6 34 34 H 0.97002 * 120.00454 * 179.97438 * 13 12 10 35 35 H 1.08006 * 120.08829 * 179.97438 * 18 9 8 36 36 H 1.08000 * 119.91416 * 179.97438 * 19 18 9 37 37 H 1.09001 * 110.96994 * 211.99380 * 22 20 2 38 38 H 1.09000 * 110.97415 * 335.72595 * 22 20 2 39 39 H 1.08999 * 110.24580 * 144.41879 * 23 22 20 40 40 H 1.08997 * 110.24264 * 266.41054 * 23 22 20 41 41 H 1.09003 * 109.47074 * 90.00435 * 25 24 23 42 42 H 1.09005 * 109.47357 * 210.00210 * 25 24 23 43 43 H 1.09001 * 109.47357 * 330.01105 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3547 1.1673 -0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1568 3.5380 -0.1074 7 6 1.6897 4.6692 0.5616 8 6 2.3653 5.8500 0.4654 9 6 3.5307 5.9283 -0.3219 10 6 4.2317 7.1486 -0.4320 11 1 4.8428 7.3438 -1.3009 12 6 4.1348 8.1050 0.5843 13 7 3.6822 7.7631 1.7638 14 14 4.6514 9.8703 0.2579 15 1 5.1243 9.9965 -1.1440 16 1 3.4921 10.7731 0.4730 17 1 5.7490 10.2444 1.1856 18 6 3.9930 4.7830 -0.9992 19 6 3.3106 3.6074 -0.8880 20 6 2.1976 -1.2687 -0.0006 21 1 3.2723 -1.0875 -0.0131 22 6 1.8064 -2.1199 1.2296 23 6 0.6810 -3.0076 0.6534 24 7 0.9427 -3.0849 -0.7886 25 6 0.3591 -4.0886 -1.6819 26 6 1.7896 -2.1151 -1.1862 27 8 2.1691 -1.9441 -2.3253 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.4978 2.3360 0.0761 32 1 0.7936 4.6087 1.1614 33 1 2.0047 6.7241 0.9873 34 1 3.6154 8.4261 2.4686 35 1 4.8856 4.8355 -1.6050 36 1 3.6636 2.7285 -1.4070 37 1 2.6469 -2.7261 1.5677 38 1 1.4326 -1.4901 2.0369 39 1 0.7201 -4.0021 1.0978 40 1 -0.2912 -2.5500 0.8363 41 1 -0.5836 -3.7149 -2.0818 42 1 1.0479 -4.2889 -2.5027 43 1 0.1787 -5.0087 -1.1261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265719518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:03 Heat of formation + Delta-G solvation = -37.317774 kcal Electronic energy + Delta-G solvation = -26232.643654 eV Core-core repulsion = 22470.565370 eV Total energy + Delta-G solvation = -3762.078284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21283 -41.01671 -39.24532 -37.81107 -36.37671 -36.23098 -34.77306 -32.79342 -31.46280 -30.66063 -29.05598 -27.85614 -27.31052 -26.24203 -23.68933 -23.03307 -22.41130 -21.21696 -20.33423 -19.65047 -19.22798 -18.36250 -17.70973 -17.56222 -17.03379 -16.80201 -16.34896 -15.99812 -15.73105 -15.23368 -14.97913 -14.72568 -14.66919 -14.49200 -14.14216 -13.95701 -13.80840 -13.65870 -13.59510 -13.43166 -13.20910 -13.11692 -12.85725 -12.77345 -12.48504 -12.37631 -12.24895 -11.77320 -11.45871 -11.35531 -11.23050 -11.02614 -10.72051 -9.83454 -9.70420 -9.47186 -8.82674 -8.58905 -6.26400 0.79856 1.01616 1.14464 1.40399 1.48025 1.55811 1.80684 1.99053 2.13837 2.23752 2.75457 2.96998 3.26385 3.45496 3.73078 3.85796 4.05358 4.07405 4.35510 4.38224 4.39415 4.46931 4.51944 4.60376 4.65415 4.80041 4.87416 4.90698 4.96579 5.04947 5.09523 5.14840 5.25067 5.39031 5.43239 5.50770 5.60157 5.72132 5.94062 6.01761 6.06124 6.13219 6.37749 6.65753 6.92224 6.94115 7.00094 7.00328 7.55045 8.34918 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038534 B = 0.002524 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.453391 B =11092.192331 C =11341.415886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.610 5.610 3 C 0.694 3.306 4 O -0.620 6.620 5 N -0.653 5.653 6 C 0.026 3.974 7 C -0.108 4.108 8 C -0.168 4.168 9 C 0.075 3.925 10 C -0.495 4.495 11 H 0.072 0.928 12 C 0.035 3.965 13 N -0.823 5.823 14 Si 0.985 3.015 15 H -0.262 1.262 16 H -0.259 1.259 17 H -0.267 1.267 18 C -0.233 4.233 19 C -0.089 4.089 20 C 0.119 3.881 21 H 0.098 0.902 22 C -0.134 4.134 23 C 0.100 3.900 24 N -0.612 5.612 25 C 0.090 3.910 26 C 0.502 3.498 27 O -0.576 6.576 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.413 0.587 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.290 0.710 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 -20.914 3.857 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.349 5.349 3 C 0.397 3.603 4 O -0.500 6.500 5 N -0.302 5.302 6 C -0.068 4.068 7 C -0.128 4.128 8 C -0.188 4.188 9 C 0.072 3.928 10 C -0.525 4.525 11 H 0.090 0.910 12 C -0.180 4.180 13 N -0.449 5.449 14 Si 0.805 3.195 15 H -0.185 1.185 16 H -0.183 1.183 17 H -0.192 1.192 18 C -0.253 4.253 19 C -0.109 4.109 20 C 0.010 3.990 21 H 0.116 0.884 22 C -0.172 4.172 23 C -0.021 4.021 24 N -0.346 5.346 25 C -0.050 4.050 26 C 0.287 3.713 27 O -0.454 6.454 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.252 0.748 32 H 0.146 0.854 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.380 -20.869 3.439 25.027 hybrid contribution 0.359 0.830 -0.472 1.021 sum -13.021 -20.038 2.967 24.081 Atomic orbital electron populations 1.22218 0.76958 1.05932 1.02607 1.46709 1.07652 1.02421 1.78080 1.16116 0.85007 0.81276 0.77936 1.90893 1.13868 1.86350 1.58895 1.41982 1.09898 1.02350 1.75999 1.16989 0.98811 0.85476 1.05512 1.20438 1.00898 0.92252 0.99245 1.20911 0.96073 0.97503 1.04320 1.17974 0.91525 0.92407 0.90886 1.19783 1.26801 1.00588 1.05305 0.90971 1.26752 0.92967 1.04902 0.93363 1.69883 1.35245 1.37291 1.02529 0.85123 0.78923 0.75914 0.79494 1.18543 1.18345 1.19155 1.20751 1.01961 0.93304 1.09298 1.20315 0.96210 0.96277 0.98123 1.21617 0.98930 0.82998 0.95407 0.88368 1.23068 1.00625 0.97844 0.95664 1.22571 0.99048 1.03082 0.77432 1.48393 1.44930 1.30061 1.11246 1.21766 0.98095 0.91359 0.93822 1.21459 0.78728 0.81940 0.89128 1.90703 1.58541 1.72491 1.23657 0.93161 0.86908 0.89221 0.74823 0.85391 0.86773 0.89960 0.89128 0.89061 0.87214 0.86877 0.86289 0.88199 0.91601 0.92791 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 9.50 127.77 1.21 2.23 16 2 N -0.61 -16.28 2.81 -840.67 -2.37 -18.65 16 3 C 0.69 26.39 8.00 179.05 1.43 27.82 16 4 O -0.62 -30.07 13.43 -3.96 -0.05 -30.13 16 5 N -0.65 -23.69 5.19 -316.78 -1.64 -25.34 16 6 C 0.03 1.21 6.27 38.56 0.24 1.45 16 7 C -0.11 -4.94 9.89 22.13 0.22 -4.72 16 8 C -0.17 -8.90 8.63 22.48 0.19 -8.71 16 9 C 0.07 4.26 5.57 -21.28 -0.12 4.14 16 10 C -0.50 -27.82 9.04 23.39 0.21 -27.61 16 11 H 0.07 3.97 7.90 -2.91 -0.02 3.95 16 12 C 0.03 1.79 5.15 85.24 0.44 2.23 16 13 N -0.82 -43.34 10.95 21.82 0.24 -43.10 16 14 Si 0.98 38.87 29.59 68.60 2.03 40.90 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 16 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 18 C -0.23 -12.94 9.74 22.48 0.22 -12.72 16 19 C -0.09 -4.67 8.57 22.13 0.19 -4.48 16 20 C 0.12 2.95 3.42 44.98 0.15 3.10 16 21 H 0.10 3.18 6.97 -2.39 -0.02 3.16 16 22 C -0.13 -1.56 6.38 31.65 0.20 -1.36 16 23 C 0.10 0.63 6.60 86.83 0.57 1.20 16 24 N -0.61 -9.18 3.34 -842.41 -2.81 -11.99 16 25 C 0.09 0.96 10.97 127.77 1.40 2.36 16 26 C 0.50 13.27 7.10 87.85 0.62 13.89 16 27 O -0.58 -21.85 17.61 -3.02 -0.05 -21.91 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.94 4.73 -2.39 -0.01 0.93 16 30 H 0.09 1.15 6.29 -2.39 -0.02 1.13 16 31 H 0.41 11.11 6.51 -92.71 -0.60 10.50 16 32 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 33 H 0.11 6.15 6.18 -2.91 -0.02 6.13 16 34 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 35 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 36 H 0.09 4.94 6.47 -2.91 -0.02 4.92 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 1.10 8.08 -2.39 -0.02 1.08 16 39 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.10 0.22 6.16 -2.39 -0.01 0.21 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.05 0.83 7.94 -2.38 -0.02 0.81 16 43 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -84.11 351.41 2.98 -81.13 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.45 Total: 30.25 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 7.20 Total: -1.17 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -6.58 Total: -99.08 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.11 Total: -52.03 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -84.11 2.98 -81.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265719518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.808 kcal (2) G-P(sol) polarization free energy of solvation -84.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds