Wall clock time and date at job start Tue Mar 31 2020 11:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47909 * 110.99753 * 2 1 4 4 C 1.54598 * 102.62798 * 149.22726 * 3 2 1 5 5 C 1.51598 * 102.85301 * 334.47477 * 4 3 2 6 6 C 1.38007 * 131.46533 * 196.12568 * 5 4 3 7 7 C 1.38152 * 120.17871 * 179.08859 * 6 5 4 8 8 C 1.38999 * 119.80723 * 0.51042 * 7 6 5 9 9 N 1.39726 * 119.94464 * 179.90270 * 8 7 6 10 10 C 1.34773 * 120.00314 * 324.62874 * 9 8 7 11 11 O 1.21381 * 119.99826 * 4.62501 * 10 9 8 12 12 C 1.49353 * 120.00329 * 184.61883 * 10 9 8 13 13 O 1.21366 * 119.99639 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00293 * 180.02562 * 12 10 9 15 15 C 1.46496 * 119.99970 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47220 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47603 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99418 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00517 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00376 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46981 * 90.00166 * 21 19 17 23 23 H 1.48496 * 109.47338 * 210.00260 * 21 19 17 24 24 H 1.48501 * 109.47122 * 330.00326 * 21 19 17 25 25 C 1.38593 * 120.10479 * 359.63139 * 8 7 6 26 26 C 1.39047 * 107.93436 * 15.78641 * 5 4 3 27 27 H 1.08997 * 109.46737 * 300.04875 * 1 2 3 28 28 H 1.08994 * 109.47501 * 60.05648 * 1 2 3 29 29 H 1.09003 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.08992 * 110.77891 * 30.93724 * 3 2 1 31 31 H 1.09007 * 110.77539 * 267.50932 * 3 2 1 32 32 H 1.09003 * 110.73336 * 216.13598 * 4 3 2 33 33 H 1.08995 * 110.89189 * 92.89291 * 4 3 2 34 34 H 1.08004 * 119.90947 * 359.34874 * 6 5 4 35 35 H 1.08000 * 120.09170 * 180.28141 * 7 6 5 36 36 H 0.97001 * 119.99637 * 144.90863 * 9 8 7 37 37 H 0.97002 * 119.99745 * 359.97438 * 14 12 10 38 38 H 1.09004 * 109.46880 * 299.98947 * 15 14 12 39 39 H 1.08993 * 109.47664 * 59.99331 * 15 14 12 40 40 H 1.09001 * 109.46974 * 299.99794 * 16 15 14 41 41 H 1.09002 * 109.47139 * 59.99413 * 16 15 14 42 42 H 0.96992 * 120.00406 * 179.97438 * 20 19 17 43 43 H 1.08002 * 119.93467 * 180.23040 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3302 1.2319 0.7718 5 6 3.0839 0.0114 1.6366 6 6 3.7475 -0.4714 2.7462 7 6 3.3038 -1.6179 3.3764 8 6 2.1922 -2.2912 2.8835 9 7 1.7422 -3.4523 3.5175 10 6 2.6281 -4.3077 4.0650 11 8 3.8095 -4.0296 4.0818 12 6 2.1563 -5.5978 4.6512 13 8 0.9750 -5.8760 4.6340 14 7 3.0421 -6.4530 5.1992 15 6 2.5793 -7.7187 5.7736 16 6 3.7761 -8.4971 6.3237 17 6 3.3000 -9.7988 6.9152 18 1 2.2487 -10.0459 6.9006 19 6 4.2063 -10.6741 7.4749 20 7 5.4865 -10.3733 7.4922 21 14 3.6161 -12.2873 8.2087 22 1 3.6233 -13.3397 7.1610 23 1 4.5193 -12.6866 9.3177 24 1 2.2362 -12.1181 8.7308 25 6 1.5261 -1.8097 1.7676 26 6 1.9710 -0.6527 1.1329 27 1 -0.3633 0.5146 0.8895 28 1 -0.3634 0.5129 -0.8904 29 1 -0.3633 -1.0277 0.0005 30 1 1.3216 2.0551 0.5239 31 1 2.1789 1.7260 -1.0182 32 1 3.5189 2.1105 1.3889 33 1 4.1597 1.0583 0.0863 34 1 4.6135 0.0509 3.1253 35 1 3.8215 -1.9920 4.2474 36 1 0.7924 -3.6446 3.5600 37 1 3.9862 -6.2308 5.2125 38 1 1.8756 -7.5155 6.5809 39 1 2.0860 -8.3093 5.0017 40 1 4.4796 -8.7003 5.5162 41 1 4.2698 -7.9066 7.0956 42 1 6.1241 -10.9889 7.8863 43 1 0.6604 -2.3330 1.3892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273157381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:50 Heat of formation + Delta-G solvation = -30.440143 kcal Electronic energy + Delta-G solvation = -24983.689520 eV Core-core repulsion = 21221.909473 eV Total energy + Delta-G solvation = -3761.780047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32620 -40.49546 -38.70773 -37.07179 -35.35735 -34.52008 -32.91191 -32.59094 -30.22696 -29.88514 -28.68384 -26.13806 -25.78482 -24.06055 -23.16167 -21.65017 -21.49148 -20.94705 -20.02896 -18.65858 -17.49625 -16.66510 -16.53647 -16.23583 -16.08436 -15.99426 -15.42773 -14.95693 -14.74310 -14.50511 -14.43259 -13.97293 -13.83356 -13.55020 -13.50186 -13.17548 -12.91167 -12.58491 -12.35493 -12.33773 -11.98754 -11.85137 -11.41924 -11.29978 -11.25014 -11.08254 -10.83697 -10.68502 -10.43310 -9.94816 -9.80378 -9.49525 -9.25607 -8.76994 -8.60450 -8.44179 -7.94000 -6.11890 -4.15764 0.86969 1.14520 1.58983 2.34823 3.17419 3.28007 3.33379 3.34529 3.37968 3.58054 3.75842 4.20645 4.25386 4.38018 4.61091 4.65049 4.66121 4.81297 4.95060 5.05190 5.11460 5.16562 5.24058 5.25020 5.34048 5.38093 5.47744 5.52099 5.88822 5.96093 6.09803 6.13809 6.19593 6.26877 6.38463 6.52294 6.58490 6.64004 6.88692 6.93671 7.41191 7.54787 7.56314 7.79327 7.84926 8.14290 8.27197 8.89738 9.49290 10.99542 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.001968 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.068623 B =14225.618042 C =14764.514475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.479 5.479 3 C 0.045 3.955 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.062 4.062 7 C -0.139 4.139 8 C 0.170 3.830 9 N -0.649 5.649 10 C 0.510 3.490 11 O -0.497 6.497 12 C 0.500 3.500 13 O -0.530 6.530 14 N -0.682 5.682 15 C 0.118 3.882 16 C 0.011 3.989 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.159 4.159 26 C 0.110 3.890 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.144 0.856 36 H 0.423 0.577 37 H 0.411 0.589 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 25.779 -13.859 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.193 5.193 3 C -0.081 4.081 4 C -0.119 4.119 5 C -0.159 4.159 6 C -0.081 4.081 7 C -0.160 4.160 8 C 0.075 3.925 9 N -0.296 5.296 10 C 0.292 3.708 11 O -0.370 6.370 12 C 0.279 3.721 13 O -0.408 6.408 14 N -0.333 5.333 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.562 4.562 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.183 4.183 26 C 0.011 3.989 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.261 0.739 37 H 0.247 0.753 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.167 25.387 -14.286 29.999 hybrid contribution -0.486 -0.670 0.915 1.234 sum -7.652 24.717 -13.371 29.125 Atomic orbital electron populations 1.22573 0.85663 1.03283 1.01594 1.60573 1.09249 1.14609 1.34834 1.23286 0.95412 0.87701 1.01659 1.21260 0.97706 0.95806 0.97130 1.20505 0.98546 0.99005 0.97845 1.20281 0.98740 0.95203 0.93866 1.21203 0.97728 0.94981 1.02100 1.17332 0.96112 0.86633 0.92378 1.43133 1.11610 1.19968 1.54854 1.20644 0.86064 0.85283 0.78790 1.90768 1.16361 1.75687 1.54178 1.19723 0.86798 0.84757 0.80787 1.90752 1.16166 1.76289 1.57585 1.46237 1.11335 1.19886 1.55868 1.21976 1.00185 0.80989 0.97172 1.19364 0.91900 0.94785 0.96636 1.21000 0.94047 1.02479 1.38722 0.92146 1.25005 0.94846 0.98573 0.95878 1.69954 1.01325 1.36809 1.44927 0.86488 0.78697 0.83400 0.78816 1.20544 1.21145 1.19728 1.20037 1.03943 0.98287 0.95988 1.19256 0.95798 0.94778 0.89083 0.94180 0.90544 0.90560 0.92092 0.88664 0.90044 0.89446 0.85478 0.83825 0.73936 0.75272 0.91701 0.91728 0.95617 0.95612 0.92746 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.16 60.07 0.55 0.65 16 2 N -0.48 -4.10 5.31 -176.86 -0.94 -5.04 16 3 C 0.05 0.28 6.91 -2.43 -0.02 0.27 16 4 C -0.08 -0.56 7.04 -26.60 -0.19 -0.75 16 5 C -0.16 -1.52 6.23 -103.96 -0.65 -2.17 16 6 C -0.06 -0.63 10.02 -39.70 -0.40 -1.03 16 7 C -0.14 -1.68 8.70 -39.33 -0.34 -2.03 16 8 C 0.17 2.03 6.28 -83.85 -0.53 1.50 16 9 N -0.65 -7.88 5.31 -10.36 -0.06 -7.93 16 10 C 0.51 7.51 7.73 -11.63 -0.09 7.42 16 11 O -0.50 -8.06 13.91 5.47 0.08 -7.99 16 12 C 0.50 8.34 7.89 -11.63 -0.09 8.25 16 13 O -0.53 -9.69 16.48 5.48 0.09 -9.60 16 14 N -0.68 -12.06 5.55 -60.76 -0.34 -12.40 16 15 C 0.12 2.41 5.61 -4.04 -0.02 2.39 16 16 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 17 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.16 -1.69 9.44 -39.07 -0.37 -2.05 16 26 C 0.11 1.12 5.95 -83.42 -0.50 0.63 16 27 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.48 7.30 -51.93 -0.38 0.10 16 30 H 0.06 0.32 7.84 -51.93 -0.41 -0.09 16 31 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.14 1.87 6.23 -52.49 -0.33 1.55 16 36 H 0.42 4.38 8.29 -40.82 -0.34 4.04 16 37 H 0.41 6.89 7.94 -40.82 -0.32 6.57 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 43 H 0.13 1.14 7.37 -52.49 -0.39 0.75 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -31.71 363.63 -9.09 -40.80 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.93 Total: 5.58 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -3.19 Total: 0.16 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.59 Total: -50.56 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.59 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.71 -9.09 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273157381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.358 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds