Wall clock time and date at job start Tue Mar 31 2020 11:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47909 * 110.99753 * 2 1 4 4 C 1.54598 * 102.62798 * 149.22726 * 3 2 1 5 5 C 1.51598 * 102.85301 * 334.47477 * 4 3 2 6 6 C 1.38007 * 131.46533 * 196.12568 * 5 4 3 7 7 C 1.38152 * 120.17871 * 179.08859 * 6 5 4 8 8 C 1.38999 * 119.80723 * 0.51042 * 7 6 5 9 9 N 1.39726 * 119.94464 * 179.90270 * 8 7 6 10 10 C 1.34773 * 120.00314 * 324.62874 * 9 8 7 11 11 O 1.21381 * 119.99826 * 4.62501 * 10 9 8 12 12 C 1.49353 * 120.00329 * 184.61883 * 10 9 8 13 13 O 1.21366 * 119.99639 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00293 * 180.02562 * 12 10 9 15 15 C 1.46496 * 119.99970 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47220 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47603 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99418 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00517 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00376 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46981 * 90.00166 * 21 19 17 23 23 H 1.48496 * 109.47338 * 210.00260 * 21 19 17 24 24 H 1.48501 * 109.47122 * 330.00326 * 21 19 17 25 25 C 1.38593 * 120.10479 * 359.63139 * 8 7 6 26 26 C 1.39047 * 107.93436 * 15.78641 * 5 4 3 27 27 H 1.08997 * 109.46737 * 300.04875 * 1 2 3 28 28 H 1.08994 * 109.47501 * 60.05648 * 1 2 3 29 29 H 1.09003 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.08992 * 110.77891 * 30.93724 * 3 2 1 31 31 H 1.09007 * 110.77539 * 267.50932 * 3 2 1 32 32 H 1.09003 * 110.73336 * 216.13598 * 4 3 2 33 33 H 1.08995 * 110.89189 * 92.89291 * 4 3 2 34 34 H 1.08004 * 119.90947 * 359.34874 * 6 5 4 35 35 H 1.08000 * 120.09170 * 180.28141 * 7 6 5 36 36 H 0.97001 * 119.99637 * 144.90863 * 9 8 7 37 37 H 0.97002 * 119.99745 * 359.97438 * 14 12 10 38 38 H 1.09004 * 109.46880 * 299.98947 * 15 14 12 39 39 H 1.08993 * 109.47664 * 59.99331 * 15 14 12 40 40 H 1.09001 * 109.46974 * 299.99794 * 16 15 14 41 41 H 1.09002 * 109.47139 * 59.99413 * 16 15 14 42 42 H 0.96992 * 120.00406 * 179.97438 * 20 19 17 43 43 H 1.08002 * 119.93467 * 180.23040 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3302 1.2319 0.7718 5 6 3.0839 0.0114 1.6366 6 6 3.7475 -0.4714 2.7462 7 6 3.3038 -1.6179 3.3764 8 6 2.1922 -2.2912 2.8835 9 7 1.7422 -3.4523 3.5175 10 6 2.6281 -4.3077 4.0650 11 8 3.8095 -4.0296 4.0818 12 6 2.1563 -5.5978 4.6512 13 8 0.9750 -5.8760 4.6340 14 7 3.0421 -6.4530 5.1992 15 6 2.5793 -7.7187 5.7736 16 6 3.7761 -8.4971 6.3237 17 6 3.3000 -9.7988 6.9152 18 1 2.2487 -10.0459 6.9006 19 6 4.2063 -10.6741 7.4749 20 7 5.4865 -10.3733 7.4922 21 14 3.6161 -12.2873 8.2087 22 1 3.6233 -13.3397 7.1610 23 1 4.5193 -12.6866 9.3177 24 1 2.2362 -12.1181 8.7308 25 6 1.5261 -1.8097 1.7676 26 6 1.9710 -0.6527 1.1329 27 1 -0.3633 0.5146 0.8895 28 1 -0.3634 0.5129 -0.8904 29 1 -0.3633 -1.0277 0.0005 30 1 1.3216 2.0551 0.5239 31 1 2.1789 1.7260 -1.0182 32 1 3.5189 2.1105 1.3889 33 1 4.1597 1.0583 0.0863 34 1 4.6135 0.0509 3.1253 35 1 3.8215 -1.9920 4.2474 36 1 0.7924 -3.6446 3.5600 37 1 3.9862 -6.2308 5.2125 38 1 1.8756 -7.5155 6.5809 39 1 2.0860 -8.3093 5.0017 40 1 4.4796 -8.7003 5.5162 41 1 4.2698 -7.9066 7.0956 42 1 6.1241 -10.9889 7.8863 43 1 0.6604 -2.3330 1.3892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273157381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:49 Heat of formation + Delta-G solvation = -52.491251 kcal Electronic energy + Delta-G solvation = -24984.645728 eV Core-core repulsion = 21221.909473 eV Total energy + Delta-G solvation = -3762.736255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29641 -41.45481 -39.97101 -38.00806 -36.86845 -35.59362 -34.81423 -33.29431 -31.73209 -30.95542 -29.52940 -27.41450 -26.70212 -25.52611 -23.90676 -23.10946 -22.34850 -22.15463 -21.13147 -19.91193 -18.62148 -18.37912 -17.53040 -17.35286 -17.17501 -16.70463 -16.59642 -16.42023 -16.25300 -15.73940 -15.43772 -15.08051 -14.82201 -14.53742 -14.48747 -14.31343 -14.11006 -13.75492 -13.32701 -13.25906 -12.98519 -12.95224 -12.79642 -12.53716 -12.40215 -12.31366 -12.29012 -12.02141 -11.70140 -11.67039 -11.44038 -10.83429 -10.62137 -10.60737 -10.25203 -9.43740 -8.67681 -8.23663 -6.34816 -0.13155 0.34613 0.48538 1.15341 1.43475 1.43706 1.55231 1.98354 2.36913 2.48765 2.63488 2.87047 3.11372 3.28785 3.59404 3.70667 3.97550 4.16996 4.19926 4.25598 4.36729 4.40610 4.44380 4.45698 4.52953 4.63315 4.74772 4.80427 4.88915 4.92541 5.02096 5.03728 5.07457 5.17725 5.31827 5.41334 5.46704 5.54365 5.60343 5.75392 5.87795 5.95313 6.12111 6.12818 6.27002 6.59436 6.77237 6.83054 7.34734 8.88291 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.001968 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.068623 B =14225.618042 C =14764.514475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.492 5.492 3 C 0.045 3.955 4 C -0.081 4.081 5 C -0.161 4.161 6 C -0.066 4.066 7 C -0.158 4.158 8 C 0.151 3.849 9 N -0.632 5.632 10 C 0.517 3.483 11 O -0.515 6.515 12 C 0.506 3.494 13 O -0.544 6.544 14 N -0.685 5.685 15 C 0.137 3.863 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.162 4.162 26 C 0.103 3.897 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.128 0.872 36 H 0.431 0.569 37 H 0.416 0.584 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.008 0.992 41 H 0.009 0.991 42 H 0.265 0.735 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.634 27.104 -14.975 32.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.206 5.206 3 C -0.080 4.080 4 C -0.118 4.118 5 C -0.164 4.164 6 C -0.085 4.085 7 C -0.179 4.179 8 C 0.056 3.944 9 N -0.279 5.279 10 C 0.299 3.701 11 O -0.390 6.390 12 C 0.287 3.713 13 O -0.422 6.422 14 N -0.336 5.336 15 C 0.015 3.985 16 C -0.020 4.020 17 C -0.583 4.583 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.792 3.208 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.185 4.185 26 C 0.003 3.997 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.163 0.837 35 H 0.146 0.854 36 H 0.270 0.730 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.074 0.926 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.384 26.755 -15.432 32.004 hybrid contribution -0.137 -0.944 1.158 1.500 sum -8.521 25.811 -14.274 30.701 Atomic orbital electron populations 1.22645 0.84416 1.03544 1.02625 1.60602 1.10492 1.15852 1.33622 1.23432 0.95102 0.86675 1.02823 1.21369 0.98296 0.95126 0.96978 1.20916 0.98038 0.99901 0.97558 1.20476 0.99269 0.94690 0.94022 1.21198 0.98201 0.96169 1.02305 1.17449 0.96866 0.86685 0.93352 1.42973 1.11618 1.19540 1.53811 1.20139 0.86038 0.84807 0.79148 1.90771 1.17036 1.75896 1.55275 1.19962 0.86267 0.85120 0.79996 1.90741 1.16729 1.76773 1.57993 1.46052 1.11821 1.19384 1.56309 1.21521 0.98177 0.81754 0.97055 1.19186 0.92849 0.94458 0.95489 1.21447 0.94452 1.03606 1.38748 0.91633 1.25923 0.94938 1.02311 0.96316 1.70074 1.02526 1.38231 1.45903 0.85399 0.78484 0.78855 0.78024 1.19843 1.20795 1.18733 1.20147 1.04170 0.98618 0.95567 1.19522 0.96048 0.94684 0.89400 0.93842 0.88780 0.90791 0.90821 0.86937 0.88137 0.88974 0.83710 0.85375 0.72966 0.74776 0.91724 0.91837 0.97401 0.97300 0.92586 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.16 127.69 1.17 1.31 16 2 N -0.49 -7.31 5.31 -713.46 -3.79 -11.10 16 3 C 0.04 0.43 6.91 86.65 0.60 1.02 16 4 C -0.08 -0.89 7.04 30.68 0.22 -0.67 16 5 C -0.16 -2.89 6.23 -19.44 -0.12 -3.01 16 6 C -0.07 -1.29 10.02 22.19 0.22 -1.07 16 7 C -0.16 -3.84 8.70 22.43 0.20 -3.64 16 8 C 0.15 3.56 6.28 38.15 0.24 3.80 16 9 N -0.63 -15.25 5.31 -305.04 -1.62 -16.87 16 10 C 0.52 15.32 7.73 87.24 0.67 15.99 16 11 O -0.52 -17.03 13.91 -3.34 -0.05 -17.08 16 12 C 0.51 16.89 7.89 87.24 0.69 17.58 16 13 O -0.54 -19.67 16.48 -3.30 -0.05 -19.73 16 14 N -0.68 -24.50 5.55 -464.52 -2.58 -27.08 16 15 C 0.14 5.67 5.61 86.38 0.48 6.15 16 16 C 0.02 0.89 5.09 29.85 0.15 1.04 16 17 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 18 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.00 0.21 5.46 84.65 0.46 0.68 16 20 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 21 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.16 -3.28 9.44 22.60 0.21 -3.07 16 26 C 0.10 1.95 5.95 38.27 0.23 2.18 16 27 H 0.04 0.43 8.09 -2.39 -0.02 0.41 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.80 7.30 -2.39 -0.02 0.78 16 30 H 0.07 0.53 7.84 -2.39 -0.02 0.51 16 31 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.13 3.47 6.23 -2.91 -0.02 3.46 16 36 H 0.43 8.72 8.29 -92.71 -0.77 7.95 16 37 H 0.42 14.29 7.94 -92.71 -0.74 13.55 16 38 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.14 2.34 7.37 -2.91 -0.02 2.32 16 Total: -1.00 -67.52 363.63 -0.57 -68.09 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.45 Total: 24.20 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.65 Total: 8.68 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -7.70 Total: -109.46 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.10 Total: -36.80 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.52 -0.57 -68.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273157381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.601 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds