Wall clock time and date at job start Tue Mar 31 2020 11:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46116 * 119.47657 * 2 1 4 4 C 1.52654 * 110.98802 * 139.80349 * 3 2 1 5 5 C 1.50623 * 110.11314 * 50.57064 * 4 3 2 6 6 C 1.37906 * 120.60165 * 146.67810 * 5 4 3 7 7 C 1.38279 * 120.07113 * 179.31742 * 6 5 4 8 8 C 1.38989 * 120.34550 * 359.91661 * 7 6 5 9 9 N 1.39980 * 119.99367 * 180.33890 * 8 7 6 10 10 C 1.34775 * 119.99825 * 144.90550 * 9 8 7 11 11 O 1.21591 * 120.00153 * 4.61359 * 10 9 8 12 12 N 1.34775 * 120.00091 * 184.62064 * 10 9 8 13 13 C 1.46495 * 120.00231 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47005 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46993 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99959 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00144 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47147 * 90.00223 * 19 17 15 21 21 H 1.48508 * 109.46865 * 210.00363 * 19 17 15 22 22 H 1.48499 * 109.47074 * 329.99934 * 19 17 15 23 23 C 1.38706 * 120.01272 * 0.35663 * 8 7 6 24 24 C 1.39232 * 119.55613 * 0.02562 * 23 8 7 25 25 C 1.34670 * 119.47286 * 179.72796 * 2 1 3 26 26 O 1.21549 * 120.33182 * 7.89426 * 25 2 1 27 27 H 1.08997 * 109.46971 * 89.99963 * 1 2 3 28 28 H 1.09000 * 109.46901 * 210.00381 * 1 2 3 29 29 H 1.09008 * 109.46786 * 329.99696 * 1 2 3 30 30 H 1.08999 * 109.17636 * 260.19045 * 3 2 1 31 31 H 1.08997 * 109.17500 * 19.41450 * 3 2 1 32 32 H 1.08997 * 109.36173 * 170.76912 * 4 3 2 33 33 H 1.08991 * 109.36136 * 290.50628 * 4 3 2 34 34 H 1.08001 * 119.96894 * 359.30456 * 6 5 4 35 35 H 1.08000 * 119.82881 * 179.88405 * 7 6 5 36 36 H 0.96995 * 119.99897 * 324.90256 * 9 8 7 37 37 H 0.97010 * 119.99221 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46993 * 299.99517 * 13 12 10 39 39 H 1.08994 * 109.47075 * 59.99970 * 13 12 10 40 40 H 1.08993 * 109.47172 * 299.99880 * 14 13 12 41 41 H 1.09004 * 109.46795 * 59.99677 * 14 13 12 42 42 H 0.97000 * 119.99797 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.22157 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1840 1.2720 0.0000 4 6 3.4008 1.2123 0.9199 5 6 4.2287 -0.0060 0.6052 6 6 5.6010 0.0243 0.7381 7 6 6.3492 -1.1048 0.4598 8 6 5.7255 -2.2762 0.0467 9 7 6.4895 -3.4169 -0.2263 10 6 6.0013 -4.6397 0.0618 11 8 4.8658 -4.7578 0.4803 12 7 6.7717 -5.7314 -0.1139 13 6 6.2409 -7.0606 0.1987 14 6 7.3099 -8.1171 -0.0880 15 6 6.7641 -9.4843 0.2342 16 1 5.7557 -9.5892 0.6065 17 6 7.5519 -10.6012 0.0535 18 7 8.7800 -10.4734 -0.3995 19 14 6.8751 -12.2961 0.4522 20 1 6.2242 -12.8656 -0.7549 21 1 7.9854 -13.1840 0.8814 22 1 5.8779 -12.1859 1.5470 23 6 4.3463 -2.3149 -0.0955 24 6 3.5954 -1.1747 0.1776 25 6 2.1276 -1.1724 0.0056 26 8 1.5249 -2.2188 -0.1336 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 2.5129 1.4974 -1.0145 31 1 1.5149 2.0615 0.3422 32 1 4.0061 2.1074 0.7770 33 1 3.0680 1.1628 1.9565 34 1 6.0920 0.9309 1.0598 35 1 7.4239 -1.0761 0.5634 36 1 7.3701 -3.3273 -0.6228 37 1 7.6775 -5.6371 -0.4481 38 1 5.9618 -7.1020 1.2516 39 1 5.3634 -7.2556 -0.4178 40 1 7.5886 -8.0755 -1.1409 41 1 8.1877 -7.9221 0.5282 42 1 9.3344 -11.2592 -0.5262 43 1 3.8582 -3.2235 -0.4159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273263951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:21 Heat of formation + Delta-G solvation = -38.276855 kcal Electronic energy + Delta-G solvation = -25409.605336 eV Core-core repulsion = 21647.485463 eV Total energy + Delta-G solvation = -3762.119872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05941 -40.03864 -38.30560 -36.61716 -35.16752 -34.56808 -32.92917 -32.13168 -31.37201 -29.77853 -28.37498 -27.36376 -25.02154 -23.97542 -23.41578 -22.08935 -21.06849 -20.66373 -19.31653 -18.26074 -17.88723 -16.76496 -16.39555 -16.35243 -16.03441 -15.51662 -15.23470 -14.69245 -14.60628 -14.47686 -14.20913 -13.85210 -13.75934 -13.58456 -13.38791 -13.18362 -12.99267 -12.71305 -12.39170 -12.28040 -11.99854 -11.60233 -11.54015 -11.20116 -11.04407 -10.63202 -10.43542 -10.23288 -10.01561 -9.89448 -9.58044 -9.27813 -9.15689 -8.93277 -8.62275 -8.40115 -8.03594 -6.09355 -4.11909 0.67793 1.19954 2.62026 2.67280 2.85021 3.30769 3.36757 3.37747 3.41734 3.76301 4.19311 4.29465 4.38411 4.38820 4.55052 4.69377 4.82707 4.91501 4.97323 5.05484 5.14168 5.22172 5.28001 5.31727 5.47621 5.53550 5.55627 5.71281 6.01824 6.08770 6.14563 6.24857 6.31247 6.36704 6.39613 6.74491 6.88436 6.91178 7.06196 7.09037 7.53923 7.61182 7.89517 7.99829 8.17797 8.31139 8.79781 8.94296 9.52981 11.02310 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002305 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.070766 B =12142.115330 C =13165.204927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.620 5.620 3 C 0.118 3.882 4 C -0.096 4.096 5 C -0.078 4.078 6 C -0.106 4.106 7 C -0.123 4.123 8 C 0.165 3.835 9 N -0.692 5.692 10 C 0.694 3.306 11 O -0.573 6.573 12 N -0.730 5.730 13 C 0.138 3.862 14 C 0.013 3.987 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.056 4.056 24 C -0.119 4.119 25 C 0.562 3.438 26 O -0.521 6.521 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.407 0.593 37 H 0.395 0.605 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 30.290 0.201 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.355 5.355 3 C -0.005 4.005 4 C -0.133 4.133 5 C -0.080 4.080 6 C -0.124 4.124 7 C -0.145 4.145 8 C 0.069 3.931 9 N -0.340 5.340 10 C 0.394 3.606 11 O -0.450 6.450 12 N -0.383 5.383 13 C 0.016 3.984 14 C -0.024 4.024 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.077 4.077 24 C -0.123 4.123 25 C 0.351 3.649 26 O -0.397 6.397 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.242 0.758 37 H 0.229 0.771 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.088 29.369 0.474 30.466 hybrid contribution 0.780 -0.835 -0.125 1.150 sum -7.308 28.533 0.349 29.457 Atomic orbital electron populations 1.21683 0.78805 1.03112 1.02021 1.47514 1.07066 1.05927 1.74969 1.21370 0.93754 0.85269 1.00157 1.20779 0.95584 0.96387 1.00597 1.19862 0.94042 0.94185 0.99862 1.20626 0.92458 0.98235 1.01101 1.21066 1.00457 0.92582 1.00351 1.17432 0.90683 0.86322 0.98639 1.42702 1.21048 1.03815 1.66484 1.16109 0.85140 0.80189 0.79134 1.90952 1.17393 1.84955 1.51724 1.45569 1.16836 1.06372 1.69570 1.21690 0.98631 0.78157 0.99968 1.19333 0.93363 0.92150 0.97598 1.21045 0.99905 0.90727 1.44255 0.92161 1.24995 0.94829 0.99484 0.95007 1.69956 1.07772 1.29954 1.45689 0.86498 0.78583 0.83590 0.78815 1.20536 1.21184 1.19691 1.21451 0.92249 0.98195 0.95853 1.19510 0.92850 0.94362 1.05579 1.18204 0.87345 0.83091 0.76252 1.90820 1.69624 1.31221 1.48024 0.92620 0.90501 0.91175 0.91488 0.89506 0.88688 0.89721 0.85062 0.85147 0.75751 0.77141 0.92466 0.92431 0.95902 0.95912 0.92857 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.37 59.85 0.62 1.31 16 2 N -0.62 -6.24 3.19 -183.27 -0.58 -6.82 16 3 C 0.12 0.71 6.46 -4.43 -0.03 0.68 16 4 C -0.10 -0.57 6.04 -28.10 -0.17 -0.74 16 5 C -0.08 -0.75 5.69 -104.26 -0.59 -1.35 16 6 C -0.11 -0.88 9.70 -39.69 -0.39 -1.27 16 7 C -0.12 -1.19 9.95 -39.29 -0.39 -1.58 16 8 C 0.17 2.18 6.30 -83.69 -0.53 1.66 16 9 N -0.69 -9.06 5.34 -14.22 -0.08 -9.14 16 10 C 0.69 12.28 8.41 -86.92 -0.73 11.55 16 11 O -0.57 -12.58 13.78 5.29 0.07 -12.51 16 12 N -0.73 -12.77 5.56 -65.23 -0.36 -13.13 16 13 C 0.14 2.97 5.61 -4.04 -0.02 2.95 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 16 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 23 C -0.06 -0.88 8.27 -39.04 -0.32 -1.21 16 24 C -0.12 -1.62 5.79 -105.10 -0.61 -2.23 16 25 C 0.56 8.14 7.49 -12.40 -0.09 8.05 16 26 O -0.52 -9.74 16.17 5.32 0.09 -9.65 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 29 H 0.07 0.33 7.79 -51.92 -0.40 -0.07 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.28 7.73 -51.93 -0.40 -0.12 16 32 H 0.09 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.41 3.77 8.84 -40.82 -0.36 3.41 16 37 H 0.40 5.75 8.49 -40.82 -0.35 5.41 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.16 3.02 5.95 -52.49 -0.31 2.71 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -36.61 361.47 -9.49 -46.10 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.98 Total: 3.87 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.81 Total: 4.71 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.29 Total: -54.54 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.61 -9.49 -46.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273263951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.825 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds