Wall clock time and date at job start Tue Mar 31 2020 11:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46116 * 119.47657 * 2 1 4 4 C 1.52654 * 110.98802 * 139.80349 * 3 2 1 5 5 C 1.50623 * 110.11314 * 50.57064 * 4 3 2 6 6 C 1.37906 * 120.60165 * 146.67810 * 5 4 3 7 7 C 1.38279 * 120.07113 * 179.31742 * 6 5 4 8 8 C 1.38989 * 120.34550 * 359.91661 * 7 6 5 9 9 N 1.39980 * 119.99367 * 180.33890 * 8 7 6 10 10 C 1.34775 * 119.99825 * 144.90550 * 9 8 7 11 11 O 1.21591 * 120.00153 * 4.61359 * 10 9 8 12 12 N 1.34775 * 120.00091 * 184.62064 * 10 9 8 13 13 C 1.46495 * 120.00231 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47005 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46993 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99959 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00144 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47147 * 90.00223 * 19 17 15 21 21 H 1.48508 * 109.46865 * 210.00363 * 19 17 15 22 22 H 1.48499 * 109.47074 * 329.99934 * 19 17 15 23 23 C 1.38706 * 120.01272 * 0.35663 * 8 7 6 24 24 C 1.39232 * 119.55613 * 0.02562 * 23 8 7 25 25 C 1.34670 * 119.47286 * 179.72796 * 2 1 3 26 26 O 1.21549 * 120.33182 * 7.89426 * 25 2 1 27 27 H 1.08997 * 109.46971 * 89.99963 * 1 2 3 28 28 H 1.09000 * 109.46901 * 210.00381 * 1 2 3 29 29 H 1.09008 * 109.46786 * 329.99696 * 1 2 3 30 30 H 1.08999 * 109.17636 * 260.19045 * 3 2 1 31 31 H 1.08997 * 109.17500 * 19.41450 * 3 2 1 32 32 H 1.08997 * 109.36173 * 170.76912 * 4 3 2 33 33 H 1.08991 * 109.36136 * 290.50628 * 4 3 2 34 34 H 1.08001 * 119.96894 * 359.30456 * 6 5 4 35 35 H 1.08000 * 119.82881 * 179.88405 * 7 6 5 36 36 H 0.96995 * 119.99897 * 324.90256 * 9 8 7 37 37 H 0.97010 * 119.99221 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46993 * 299.99517 * 13 12 10 39 39 H 1.08994 * 109.47075 * 59.99970 * 13 12 10 40 40 H 1.08993 * 109.47172 * 299.99880 * 14 13 12 41 41 H 1.09004 * 109.46795 * 59.99677 * 14 13 12 42 42 H 0.97000 * 119.99797 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.22157 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1840 1.2720 0.0000 4 6 3.4008 1.2123 0.9199 5 6 4.2287 -0.0060 0.6052 6 6 5.6010 0.0243 0.7381 7 6 6.3492 -1.1048 0.4598 8 6 5.7255 -2.2762 0.0467 9 7 6.4895 -3.4169 -0.2263 10 6 6.0013 -4.6397 0.0618 11 8 4.8658 -4.7578 0.4803 12 7 6.7717 -5.7314 -0.1139 13 6 6.2409 -7.0606 0.1987 14 6 7.3099 -8.1171 -0.0880 15 6 6.7641 -9.4843 0.2342 16 1 5.7557 -9.5892 0.6065 17 6 7.5519 -10.6012 0.0535 18 7 8.7800 -10.4734 -0.3995 19 14 6.8751 -12.2961 0.4522 20 1 6.2242 -12.8656 -0.7549 21 1 7.9854 -13.1840 0.8814 22 1 5.8779 -12.1859 1.5470 23 6 4.3463 -2.3149 -0.0955 24 6 3.5954 -1.1747 0.1776 25 6 2.1276 -1.1724 0.0056 26 8 1.5249 -2.2188 -0.1336 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 2.5129 1.4974 -1.0145 31 1 1.5149 2.0615 0.3422 32 1 4.0061 2.1074 0.7770 33 1 3.0680 1.1628 1.9565 34 1 6.0920 0.9309 1.0598 35 1 7.4239 -1.0761 0.5634 36 1 7.3701 -3.3273 -0.6228 37 1 7.6775 -5.6371 -0.4481 38 1 5.9618 -7.1020 1.2516 39 1 5.3634 -7.2556 -0.4178 40 1 7.5886 -8.0755 -1.1409 41 1 8.1877 -7.9221 0.5282 42 1 9.3344 -11.2592 -0.5262 43 1 3.8582 -3.2235 -0.4159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273263951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:19 Heat of formation + Delta-G solvation = -65.567064 kcal Electronic energy + Delta-G solvation = -25410.788728 eV Core-core repulsion = 21647.485463 eV Total energy + Delta-G solvation = -3763.303265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.04486 -41.25301 -39.36052 -37.56733 -36.70053 -35.85220 -34.88260 -33.04044 -32.27148 -31.47444 -29.37514 -28.13894 -26.80728 -24.96663 -24.26470 -23.24303 -22.68521 -21.99236 -20.25596 -19.54962 -18.84175 -18.46510 -17.66656 -17.19265 -17.06821 -16.82411 -16.52529 -16.23586 -15.93126 -15.67537 -15.32906 -15.07828 -14.94381 -14.50972 -14.44549 -14.32225 -14.15073 -13.64140 -13.43194 -13.24919 -13.15926 -12.96692 -12.74189 -12.55540 -12.47655 -12.29393 -12.13582 -11.69961 -11.54168 -11.37237 -11.10832 -11.02356 -10.62367 -10.15290 -10.06237 -9.72646 -9.02791 -8.26154 -6.36160 -0.22048 0.29589 1.39909 1.40848 1.49478 1.54523 1.68427 1.94281 2.03588 2.39497 2.81666 3.08638 3.17904 3.47388 3.71930 3.81689 4.03133 4.21287 4.30812 4.33003 4.37416 4.44928 4.46513 4.50815 4.59480 4.67523 4.79473 4.83683 4.87945 4.95419 5.09586 5.17420 5.22975 5.25759 5.39795 5.43438 5.47093 5.51835 5.56144 5.75758 5.92028 5.96375 6.14557 6.25068 6.76166 6.96042 7.02361 7.32865 7.42732 8.85715 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002305 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.070766 B =12142.115330 C =13165.204927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.612 5.612 3 C 0.106 3.894 4 C -0.094 4.094 5 C -0.065 4.065 6 C -0.092 4.092 7 C -0.104 4.104 8 C 0.136 3.864 9 N -0.671 5.671 10 C 0.693 3.307 11 O -0.621 6.621 12 N -0.723 5.723 13 C 0.159 3.841 14 C 0.026 3.974 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.964 3.036 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.092 4.092 24 C -0.147 4.147 25 C 0.546 3.454 26 O -0.589 6.589 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.427 0.573 37 H 0.411 0.589 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.011 0.989 41 H 0.013 0.987 42 H 0.267 0.733 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 34.462 1.095 34.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C -0.015 4.015 4 C -0.131 4.131 5 C -0.066 4.066 6 C -0.110 4.110 7 C -0.125 4.125 8 C 0.042 3.958 9 N -0.321 5.321 10 C 0.394 3.606 11 O -0.501 6.501 12 N -0.377 5.377 13 C 0.035 3.965 14 C -0.012 4.012 15 C -0.586 4.586 16 H 0.074 0.926 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.114 4.114 24 C -0.151 4.151 25 C 0.336 3.664 26 O -0.470 6.470 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.110 0.890 34 H 0.201 0.799 35 H 0.185 0.815 36 H 0.266 0.734 37 H 0.248 0.752 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.756 33.661 1.345 34.358 hybrid contribution 0.355 -1.933 -0.415 2.009 sum -6.401 31.727 0.930 32.380 Atomic orbital electron populations 1.21855 0.77898 1.03847 1.02506 1.47727 1.07993 1.06131 1.72587 1.21811 0.94611 0.83860 1.01218 1.20975 0.95384 0.95974 1.00742 1.20394 0.95328 0.93825 0.97073 1.21245 0.91684 0.99342 0.98774 1.21510 1.02358 0.90984 0.97619 1.17663 0.89817 0.87436 1.00929 1.42344 1.21683 1.02307 1.65757 1.16224 0.84365 0.81322 0.78728 1.90944 1.19552 1.85867 1.53758 1.45176 1.17566 1.05102 1.69891 1.21136 0.97089 0.79510 0.98783 1.19122 0.93533 0.92135 0.96408 1.21444 1.00051 0.92490 1.44665 0.92570 1.25845 0.95100 1.03431 0.94674 1.70047 1.08811 1.31266 1.46268 0.85454 0.78132 0.78740 0.78782 1.19804 1.20226 1.19288 1.21167 0.93918 0.97469 0.98869 1.19619 0.92414 0.95525 1.07497 1.18652 0.88154 0.83620 0.75926 1.90768 1.70873 1.33833 1.51574 0.92314 0.93322 0.86761 0.90614 0.85454 0.84111 0.88957 0.79879 0.81459 0.73364 0.75240 0.93729 0.94024 0.97069 0.96874 0.92466 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.37 127.77 1.33 2.59 16 2 N -0.61 -11.93 3.19 -852.08 -2.72 -14.64 16 3 C 0.11 0.86 6.46 86.34 0.56 1.42 16 4 C -0.09 -0.64 6.04 29.71 0.18 -0.46 16 5 C -0.06 -1.06 5.69 -19.63 -0.11 -1.17 16 6 C -0.09 -1.08 9.70 22.20 0.22 -0.87 16 7 C -0.10 -1.65 9.95 22.46 0.22 -1.43 16 8 C 0.14 3.62 6.30 38.13 0.24 3.86 16 9 N -0.67 -17.82 5.34 -317.18 -1.69 -19.52 16 10 C 0.69 25.94 8.41 179.06 1.51 27.44 16 11 O -0.62 -29.73 13.78 -4.00 -0.06 -29.78 16 12 N -0.72 -26.33 5.56 -478.53 -2.66 -28.99 16 13 C 0.16 7.23 5.61 86.38 0.48 7.72 16 14 C 0.03 1.32 5.09 29.85 0.15 1.47 16 15 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.48 5.46 84.65 0.46 0.94 16 18 N -0.92 -54.60 13.29 21.45 0.28 -54.32 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C -0.09 -3.17 8.27 22.62 0.19 -2.98 16 24 C -0.15 -4.14 5.79 -20.18 -0.12 -4.26 16 25 C 0.55 17.04 7.49 86.79 0.65 17.69 16 26 O -0.59 -24.93 16.17 -3.87 -0.06 -24.99 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.04 7.51 -2.39 -0.02 1.03 16 29 H 0.11 0.75 7.79 -2.38 -0.02 0.73 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.13 0.08 7.73 -2.39 -0.02 0.06 16 32 H 0.14 -0.20 8.07 -2.39 -0.02 -0.22 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 35 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.43 7.44 8.84 -92.71 -0.82 6.62 16 37 H 0.41 12.15 8.49 -92.70 -0.79 11.36 16 38 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.10 4.58 5.95 -2.91 -0.02 4.56 16 Total: -1.00 -89.86 361.47 0.76 -89.10 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.55 Total: 15.72 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 6.19 Total: 20.77 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -6.79 Total: -117.47 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -0.12 Total: -54.78 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -89.86 0.76 -89.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273263951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.533 kcal (2) G-P(sol) polarization free energy of solvation -89.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds