Wall clock time and date at job start Tue Mar 31 2020 11:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35045 * 126.39849 * 2 1 4 4 N 1.30495 * 108.69990 * 179.82112 * 3 2 1 5 5 C 1.34128 * 109.25774 * 0.44365 * 4 3 2 6 6 C 1.34669 * 108.01780 * 359.72199 * 5 4 3 7 7 C 1.50703 * 126.59045 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46620 * 84.95969 * 7 6 5 9 9 C 1.50703 * 109.46968 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00101 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99928 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00045 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47141 * 90.00260 * 12 11 9 14 14 H 1.07999 * 119.99749 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99952 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00110 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46944 * 90.00264 * 17 15 13 19 19 H 1.48499 * 109.47474 * 210.00132 * 17 15 13 20 20 H 1.48501 * 109.46989 * 330.00032 * 17 15 13 21 21 C 1.46506 * 120.00307 * 0.02562 * 11 9 8 22 22 C 1.50697 * 109.47206 * 89.99410 * 21 11 9 23 23 C 1.34521 * 125.79012 * 89.71668 * 22 21 11 24 24 C 1.41376 * 106.83995 * 179.88765 * 23 22 21 25 25 C 1.34514 * 106.84231 * 0.37635 * 24 23 22 26 26 O 1.34304 * 108.42218 * 359.77030 * 25 24 23 27 27 H 1.09002 * 109.47391 * 269.69091 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.69147 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.69274 * 1 2 3 30 30 H 1.07997 * 125.64821 * 359.97332 * 3 2 1 31 31 H 1.08000 * 125.99029 * 179.72614 * 5 4 3 32 32 H 1.08996 * 109.47055 * 204.96012 * 7 6 5 33 33 H 1.09006 * 109.47116 * 324.96560 * 7 6 5 34 34 H 1.08996 * 109.47442 * 299.99806 * 8 7 6 35 35 H 1.09000 * 109.47248 * 60.00249 * 8 7 6 36 36 H 1.08994 * 109.47210 * 210.00537 * 12 11 9 37 37 H 1.08997 * 109.46863 * 330.00285 * 12 11 9 38 38 H 0.97009 * 119.99756 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47017 * 209.99410 * 21 11 9 40 40 H 1.09000 * 109.46465 * 329.99257 * 21 11 9 41 41 H 1.08003 * 126.57447 * 0.02562 * 23 22 21 42 42 H 1.07999 * 126.58139 * 180.16364 * 24 23 22 43 43 H 1.08003 * 125.78830 * 179.75056 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0039 5 6 3.5461 -0.6505 -0.0034 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0131 8 6 1.8081 -3.0746 1.4213 9 6 1.3666 -4.5155 1.4142 10 8 1.1011 -5.0632 0.3652 11 7 1.2677 -5.1957 2.5735 12 6 0.8390 -6.5966 2.5665 13 6 2.0454 -7.4904 2.4371 14 1 3.0327 -7.0582 2.3673 15 6 1.8887 -8.8599 2.4076 16 7 0.6864 -9.3862 2.4920 17 14 3.3842 -9.9679 2.2478 18 1 3.8972 -10.3049 3.6000 19 1 3.0025 -11.2153 1.5381 20 1 4.4415 -9.2643 1.4782 21 6 1.5889 -4.5342 3.8406 22 6 0.3457 -3.8938 4.4022 23 6 -0.5368 -4.4816 5.2301 24 6 -1.5402 -3.5246 5.5055 25 6 -1.2154 -2.4119 4.8229 26 8 -0.0722 -2.6413 4.1565 27 1 -0.3634 -0.0055 1.0276 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5091 30 1 1.9334 2.1144 -0.0004 31 1 4.4369 -1.2611 -0.0066 32 1 0.8392 -2.6155 -0.4472 33 1 2.5348 -3.1335 -0.6059 34 1 2.8052 -3.0019 1.8554 35 1 1.1097 -2.4839 2.0141 36 1 0.3182 -6.8218 3.4971 37 1 0.1684 -6.7671 1.7244 38 1 0.5762 -10.3497 2.4709 39 1 1.9698 -5.2704 4.5484 40 1 2.3461 -3.7692 3.6693 41 1 -0.4869 -5.4904 5.6127 42 1 -2.4038 -3.6617 6.1393 43 1 -1.7786 -1.4904 4.8124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276676311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:04 Heat of formation + Delta-G solvation = 40.874478 kcal Electronic energy + Delta-G solvation = -26541.741499 eV Core-core repulsion = 22783.053886 eV Total energy + Delta-G solvation = -3758.687613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38927 -42.11067 -39.12710 -35.35329 -34.23941 -33.51968 -32.85634 -32.63490 -30.19461 -29.09931 -27.33238 -27.07398 -25.52920 -24.43693 -22.31685 -21.54744 -21.44724 -20.54877 -19.82250 -18.55730 -17.38376 -17.17401 -16.49586 -16.28406 -15.82001 -15.72986 -15.28966 -15.21274 -14.58195 -14.29263 -14.14237 -13.69140 -13.20930 -13.10562 -13.08269 -12.81965 -12.68979 -12.62278 -12.44922 -12.36340 -12.08618 -11.87434 -11.54819 -11.23974 -11.04487 -10.89256 -10.62562 -10.21591 -9.96060 -9.77625 -9.70393 -9.63021 -9.05139 -8.47828 -8.38153 -8.30500 -7.85373 -6.08388 -4.13552 1.83642 1.99064 2.71148 2.76924 3.06814 3.14959 3.28268 3.35006 3.37056 3.42648 3.91671 4.41479 4.54202 4.63355 4.67181 4.86601 4.90597 5.01381 5.12227 5.13908 5.19502 5.22682 5.25578 5.30940 5.41674 5.51676 5.67329 5.74658 5.85126 5.93275 5.95453 6.13093 6.17285 6.25165 6.41763 6.65972 6.73798 6.96099 7.13319 7.25944 7.39080 7.45063 7.87506 8.04161 8.17421 8.26486 8.83735 8.98925 9.52010 10.99763 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004192 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.266475 B = 6677.437475 C = 8504.683018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.459 5.459 3 C 0.171 3.829 4 N -0.495 5.495 5 C -0.029 4.029 6 C -0.013 4.013 7 C -0.028 4.028 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.535 6.535 11 N -0.593 5.593 12 C 0.247 3.753 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.190 3.810 22 C -0.025 4.025 23 C -0.194 4.194 24 C -0.211 4.211 25 C -0.053 4.053 26 O -0.178 6.178 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.202 0.798 31 H 0.169 0.831 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 19.015 2.432 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.111 4.111 4 N -0.213 5.213 5 C -0.176 4.176 6 C -0.127 4.127 7 C -0.066 4.066 8 C -0.178 4.178 9 C 0.297 3.703 10 O -0.412 6.412 11 N -0.325 5.325 12 C 0.128 3.872 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.065 3.935 22 C -0.076 4.076 23 C -0.214 4.214 24 C -0.231 4.231 25 C -0.121 4.121 26 O -0.074 6.074 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.218 0.782 31 H 0.186 0.814 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.103 0.897 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.933 19.234 1.676 19.528 hybrid contribution -0.390 -1.228 0.313 1.326 sum -3.323 18.006 1.989 18.418 Atomic orbital electron populations 1.22056 0.76783 1.04661 1.03797 1.45305 1.07549 1.06794 1.54547 1.24849 0.85767 0.93315 1.07178 1.70249 1.19402 1.12148 1.19456 1.22085 0.95875 0.90960 1.08709 1.21391 0.91232 0.89873 1.10247 1.19768 1.03155 0.87079 0.96644 1.21733 1.03472 0.94487 0.98066 1.20363 0.78191 0.87730 0.84062 1.90679 1.49711 1.70329 1.30514 1.48320 1.66139 1.14228 1.03785 1.19321 0.95941 0.73504 0.98453 1.21423 0.93334 0.91045 1.50935 0.92267 1.24925 0.96083 0.97994 0.94971 1.69938 1.21254 1.11953 1.50108 0.86500 0.82809 0.80037 0.78117 1.20614 1.21115 1.19803 1.19899 0.89177 0.96368 0.88011 1.23323 1.00530 0.82796 1.00945 1.21717 0.95627 1.01270 1.02767 1.21827 1.02108 0.94074 1.05061 1.23906 0.88682 1.01003 0.98500 1.83995 1.35055 1.30768 1.57605 0.90383 0.89415 0.89537 0.78176 0.81374 0.90674 0.88591 0.88950 0.89425 0.94916 0.93806 0.92689 0.86588 0.89698 0.83200 0.83773 0.78666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.00 59.85 0.66 1.16 16 2 N -0.46 -4.93 3.15 -121.36 -0.38 -5.31 16 3 C 0.17 1.87 12.56 -90.38 -1.14 0.73 16 4 N -0.49 -6.92 11.25 -14.67 -0.17 -7.08 16 5 C -0.03 -0.39 11.79 -17.81 -0.21 -0.60 16 6 C -0.01 -0.16 6.21 -81.60 -0.51 -0.67 16 7 C -0.03 -0.38 4.84 -27.88 -0.13 -0.51 16 8 C -0.14 -2.00 4.23 -27.88 -0.12 -2.12 16 9 C 0.51 10.11 7.67 -10.99 -0.08 10.02 16 10 O -0.54 -12.84 15.56 5.56 0.09 -12.75 16 11 N -0.59 -12.00 2.44 -176.43 -0.43 -12.43 16 12 C 0.25 6.21 5.16 -5.19 -0.03 6.18 16 13 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 17 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.19 3.00 5.74 -5.19 -0.03 2.97 16 22 C -0.02 -0.38 6.85 -35.62 -0.24 -0.62 16 23 C -0.19 -2.92 10.81 -39.70 -0.43 -3.35 16 24 C -0.21 -2.70 10.91 -39.71 -0.43 -3.13 16 25 C -0.05 -0.62 12.09 29.42 0.36 -0.26 16 26 O -0.18 -2.50 9.55 5.70 0.05 -2.44 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.66 7.12 -51.93 -0.37 0.29 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.07 1.04 7.05 -51.93 -0.37 0.67 16 33 H 0.10 1.38 8.10 -51.93 -0.42 0.96 16 34 H 0.09 1.23 7.40 -51.93 -0.38 0.84 16 35 H 0.09 1.21 6.92 -51.93 -0.36 0.86 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.12 1.79 8.07 -51.93 -0.42 1.37 16 40 H 0.08 1.12 6.44 -51.93 -0.33 0.79 16 41 H 0.15 2.26 8.06 -52.48 -0.42 1.83 16 42 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 43 H 0.20 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -35.16 370.10 -8.27 -43.43 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.96 Total: 3.21 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -2.76 Total: -3.31 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.24 Total: -50.07 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.14 Total: -15.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.16 -8.27 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276676311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.303 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds