Wall clock time and date at job start Tue Mar 31 2020 11:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35045 * 126.39849 * 2 1 4 4 N 1.30495 * 108.69990 * 179.82112 * 3 2 1 5 5 C 1.34128 * 109.25774 * 0.44365 * 4 3 2 6 6 C 1.34669 * 108.01780 * 359.72199 * 5 4 3 7 7 C 1.50703 * 126.59045 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46620 * 84.95969 * 7 6 5 9 9 C 1.50703 * 109.46968 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00101 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99928 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00045 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47141 * 90.00260 * 12 11 9 14 14 H 1.07999 * 119.99749 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99952 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00110 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46944 * 90.00264 * 17 15 13 19 19 H 1.48499 * 109.47474 * 210.00132 * 17 15 13 20 20 H 1.48501 * 109.46989 * 330.00032 * 17 15 13 21 21 C 1.46506 * 120.00307 * 0.02562 * 11 9 8 22 22 C 1.50697 * 109.47206 * 89.99410 * 21 11 9 23 23 C 1.34521 * 125.79012 * 89.71668 * 22 21 11 24 24 C 1.41376 * 106.83995 * 179.88765 * 23 22 21 25 25 C 1.34514 * 106.84231 * 0.37635 * 24 23 22 26 26 O 1.34304 * 108.42218 * 359.77030 * 25 24 23 27 27 H 1.09002 * 109.47391 * 269.69091 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.69147 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.69274 * 1 2 3 30 30 H 1.07997 * 125.64821 * 359.97332 * 3 2 1 31 31 H 1.08000 * 125.99029 * 179.72614 * 5 4 3 32 32 H 1.08996 * 109.47055 * 204.96012 * 7 6 5 33 33 H 1.09006 * 109.47116 * 324.96560 * 7 6 5 34 34 H 1.08996 * 109.47442 * 299.99806 * 8 7 6 35 35 H 1.09000 * 109.47248 * 60.00249 * 8 7 6 36 36 H 1.08994 * 109.47210 * 210.00537 * 12 11 9 37 37 H 1.08997 * 109.46863 * 330.00285 * 12 11 9 38 38 H 0.97009 * 119.99756 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47017 * 209.99410 * 21 11 9 40 40 H 1.09000 * 109.46465 * 329.99257 * 21 11 9 41 41 H 1.08003 * 126.57447 * 0.02562 * 23 22 21 42 42 H 1.07999 * 126.58139 * 180.16364 * 24 23 22 43 43 H 1.08003 * 125.78830 * 179.75056 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0039 5 6 3.5461 -0.6505 -0.0034 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0131 8 6 1.8081 -3.0746 1.4213 9 6 1.3666 -4.5155 1.4142 10 8 1.1011 -5.0632 0.3652 11 7 1.2677 -5.1957 2.5735 12 6 0.8390 -6.5966 2.5665 13 6 2.0454 -7.4904 2.4371 14 1 3.0327 -7.0582 2.3673 15 6 1.8887 -8.8599 2.4076 16 7 0.6864 -9.3862 2.4920 17 14 3.3842 -9.9679 2.2478 18 1 3.8972 -10.3049 3.6000 19 1 3.0025 -11.2153 1.5381 20 1 4.4415 -9.2643 1.4782 21 6 1.5889 -4.5342 3.8406 22 6 0.3457 -3.8938 4.4022 23 6 -0.5368 -4.4816 5.2301 24 6 -1.5402 -3.5246 5.5055 25 6 -1.2154 -2.4119 4.8229 26 8 -0.0722 -2.6413 4.1565 27 1 -0.3634 -0.0055 1.0276 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5091 30 1 1.9334 2.1144 -0.0004 31 1 4.4369 -1.2611 -0.0066 32 1 0.8392 -2.6155 -0.4472 33 1 2.5348 -3.1335 -0.6059 34 1 2.8052 -3.0019 1.8554 35 1 1.1097 -2.4839 2.0141 36 1 0.3182 -6.8218 3.4971 37 1 0.1684 -6.7671 1.7244 38 1 0.5762 -10.3497 2.4709 39 1 1.9698 -5.2704 4.5484 40 1 2.3461 -3.7692 3.6693 41 1 -0.4869 -5.4904 5.6127 42 1 -2.4038 -3.6617 6.1393 43 1 -1.7786 -1.4904 4.8124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276676311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:04 Heat of formation + Delta-G solvation = 20.442817 kcal Electronic energy + Delta-G solvation = -26542.627483 eV Core-core repulsion = 22783.053886 eV Total energy + Delta-G solvation = -3759.573596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45209 -42.99396 -40.72603 -36.98160 -35.26048 -34.86102 -34.41414 -33.84765 -31.55929 -30.36106 -28.93709 -27.76077 -26.81441 -25.95634 -24.00800 -22.62408 -22.31500 -21.68084 -20.75160 -20.02477 -18.83733 -18.37780 -17.98575 -17.54840 -17.30271 -16.76064 -16.56402 -16.50454 -16.06620 -15.65039 -15.22580 -14.73719 -14.56020 -14.34731 -14.05031 -13.85939 -13.81670 -13.74883 -13.65879 -13.55822 -13.46698 -13.21675 -12.99366 -12.94286 -12.68657 -12.49555 -12.21931 -12.15371 -11.73792 -10.91608 -10.83239 -10.69615 -10.62928 -10.45192 -9.68273 -9.38795 -9.27739 -8.21857 -6.35995 0.74909 1.09599 1.38767 1.41381 1.51545 1.66947 1.74230 1.95243 2.12803 2.21452 2.36133 2.48939 3.08943 3.50288 3.79691 3.90345 3.93662 3.98327 4.00527 4.07305 4.15748 4.17912 4.35241 4.43377 4.48297 4.54307 4.60380 4.69955 4.73148 4.92425 4.94798 5.00387 5.04569 5.07802 5.21463 5.23290 5.47249 5.51376 5.62253 5.78813 5.80124 6.05777 6.22017 6.35963 6.62656 6.74427 7.15201 7.26843 7.41528 8.85751 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004192 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.266475 B = 6677.437475 C = 8504.683018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.458 5.458 3 C 0.183 3.817 4 N -0.534 5.534 5 C -0.044 4.044 6 C -0.022 4.022 7 C -0.017 4.017 8 C -0.116 4.116 9 C 0.502 3.498 10 O -0.587 6.587 11 N -0.597 5.597 12 C 0.265 3.735 13 C -0.542 4.542 14 H 0.058 0.942 15 C 0.010 3.990 16 N -0.928 5.928 17 Si 0.966 3.034 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.190 3.810 22 C -0.044 4.044 23 C -0.211 4.211 24 C -0.229 4.229 25 C -0.033 4.033 26 O -0.182 6.182 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.242 0.758 31 H 0.170 0.830 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.022 0.978 37 H -0.004 1.004 38 H 0.266 0.734 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.166 0.834 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 21.687 3.249 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.140 5.140 3 C -0.099 4.099 4 N -0.252 5.252 5 C -0.192 4.192 6 C -0.138 4.138 7 C -0.056 4.056 8 C -0.156 4.156 9 C 0.292 3.708 10 O -0.467 6.467 11 N -0.328 5.328 12 C 0.144 3.856 13 C -0.580 4.580 14 H 0.077 0.923 15 C -0.189 4.189 16 N -0.568 5.568 17 Si 0.790 3.210 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.067 3.933 22 C -0.095 4.095 23 C -0.231 4.231 24 C -0.248 4.248 25 C -0.100 4.100 26 O -0.078 6.078 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.258 0.742 31 H 0.188 0.812 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.040 0.960 37 H 0.014 0.986 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.184 0.816 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.921 21.936 2.533 22.274 hybrid contribution -0.518 -1.963 0.088 2.032 sum -3.438 19.974 2.620 20.436 Atomic orbital electron populations 1.22341 0.74607 1.05959 1.04931 1.45502 1.08857 1.06010 1.53626 1.25630 0.84994 0.94735 1.04508 1.70240 1.21374 1.12220 1.21404 1.22260 0.96437 0.91353 1.09119 1.21099 0.91448 0.89735 1.11498 1.19560 1.02544 0.87842 0.95671 1.21627 1.04426 0.90344 0.99203 1.21298 0.76975 0.89570 0.82979 1.90647 1.51903 1.71873 1.32294 1.48271 1.65866 1.12672 1.05967 1.18722 0.94537 0.76569 0.95726 1.21713 0.93759 0.91806 1.50763 0.92345 1.25818 0.99029 0.99576 0.94469 1.70060 1.23402 1.12395 1.50942 0.85440 0.79030 0.77770 0.78739 1.18881 1.20919 1.19598 1.20031 0.90545 0.96862 0.85891 1.22987 1.00746 0.83745 1.02007 1.21905 0.96741 1.01422 1.03049 1.22129 1.02527 0.93916 1.06262 1.24826 0.87182 1.02049 0.95989 1.83980 1.36017 1.29850 1.57956 0.89244 0.90161 0.86351 0.74249 0.81231 0.91166 0.89998 0.87113 0.87902 0.95954 0.98551 0.92479 0.86846 0.86674 0.84399 0.81639 0.73999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 11.00 127.77 1.41 2.11 16 2 N -0.46 -8.64 3.15 -537.88 -1.70 -10.33 16 3 C 0.18 3.46 12.56 180.26 2.26 5.73 16 4 N -0.53 -14.03 11.25 -200.32 -2.25 -16.28 16 5 C -0.04 -1.16 11.79 83.52 0.98 -0.18 16 6 C -0.02 -0.54 6.21 40.95 0.25 -0.29 16 7 C -0.02 -0.46 4.84 29.85 0.14 -0.32 16 8 C -0.12 -3.28 4.23 29.85 0.13 -3.15 16 9 C 0.50 20.38 7.67 87.66 0.67 21.05 16 10 O -0.59 -29.48 15.56 -3.03 -0.05 -29.52 16 11 N -0.60 -24.83 2.44 -830.49 -2.03 -26.86 16 12 C 0.27 14.07 5.16 85.63 0.44 14.51 16 13 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 14 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 15 C 0.01 0.58 5.46 84.65 0.46 1.04 16 16 N -0.93 -55.59 13.29 21.44 0.28 -55.31 16 17 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.19 5.96 5.74 85.63 0.49 6.45 16 22 C -0.04 -1.31 6.85 24.83 0.17 -1.14 16 23 C -0.21 -6.35 10.81 22.19 0.24 -6.11 16 24 C -0.23 -5.40 10.91 22.19 0.24 -5.16 16 25 C -0.03 -0.66 12.09 66.97 0.81 0.15 16 26 O -0.18 -4.64 9.55 -2.51 -0.02 -4.67 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.05 7.12 -2.39 -0.02 1.03 16 29 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.17 4.12 8.06 -2.91 -0.02 4.09 16 32 H 0.07 1.95 7.05 -2.39 -0.02 1.93 16 33 H 0.08 2.43 8.10 -2.38 -0.02 2.41 16 34 H 0.11 2.76 7.40 -2.39 -0.02 2.74 16 35 H 0.10 2.64 6.92 -2.39 -0.02 2.62 16 36 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 37 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 38 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 39 H 0.11 3.57 8.07 -2.39 -0.02 3.55 16 40 H 0.12 2.87 6.44 -2.39 -0.02 2.85 16 41 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.24 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -80.01 370.10 6.23 -73.78 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.01 Total: 18.41 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 8.95 Total: 4.40 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -5.69 Total: -108.78 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.07 Total: -34.19 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -80.01 6.23 -73.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276676311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.224 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds