Wall clock time and date at job start Tue Mar 31 2020 11:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99542 * 2 1 4 4 C 1.52997 * 109.47488 * 66.04927 * 3 2 1 5 5 C 1.50694 * 109.47310 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.00088 * 269.72162 * 5 4 3 7 7 C 1.38213 * 120.00440 * 179.79092 * 6 5 4 8 8 C 1.38254 * 119.99745 * 0.46141 * 7 6 5 9 9 C 1.38223 * 119.99889 * 359.77014 * 8 7 6 10 10 N 1.48018 * 119.99753 * 180.02562 * 9 8 7 11 11 O 1.21797 * 119.99859 * 180.02562 * 10 9 8 12 12 O 1.21809 * 120.00077 * 0.02562 * 10 9 8 13 13 C 1.38212 * 120.00211 * 89.99754 * 5 4 3 14 14 C 1.46899 * 111.00044 * 236.04433 * 2 1 3 15 15 C 1.53000 * 109.47149 * 199.60065 * 14 2 1 16 16 H 1.09001 * 109.47125 * 304.81599 * 15 14 2 17 17 C 1.47190 * 109.47038 * 64.81528 * 15 14 2 18 18 N 3.66224 * 124.20789 * 157.14767 * 2 1 3 19 19 C 1.53003 * 109.47245 * 184.81899 * 15 14 2 20 20 C 1.50697 * 109.47176 * 175.00072 * 19 15 14 21 21 H 1.07996 * 119.99767 * 359.97438 * 20 19 15 22 22 C 1.37874 * 119.99841 * 179.72475 * 20 19 15 23 23 N 1.31513 * 120.00218 * 0.26840 * 22 20 19 24 24 Si 1.86800 * 119.99772 * 180.27444 * 22 20 19 25 25 H 1.48497 * 109.47279 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47109 * 119.99923 * 24 22 20 27 27 H 1.48500 * 109.47151 * 239.99643 * 24 22 20 28 28 H 1.09004 * 109.46877 * 187.90044 * 1 2 3 29 29 H 1.08997 * 109.47622 * 307.89915 * 1 2 3 30 30 H 1.09000 * 109.47270 * 67.90852 * 1 2 3 31 31 H 1.09006 * 109.46948 * 186.04374 * 3 2 1 32 32 H 1.08995 * 109.47484 * 306.04107 * 3 2 1 33 33 H 1.09006 * 109.46574 * 299.99676 * 4 3 2 34 34 H 1.08995 * 109.47427 * 59.99146 * 4 3 2 35 35 H 1.08007 * 119.99395 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.00170 * 180.25580 * 7 6 5 37 37 H 1.07995 * 120.00245 * 179.79437 * 8 7 6 38 38 H 1.07999 * 120.00051 * 359.97438 * 13 5 4 39 39 H 1.09003 * 109.46735 * 79.59780 * 14 2 1 40 40 H 1.09003 * 109.47208 * 319.60257 * 14 2 1 41 41 H 1.08995 * 109.46874 * 54.99649 * 19 15 14 42 42 H 1.09003 * 109.46446 * 294.99854 * 19 15 14 43 43 H 0.96995 * 120.00072 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1719 3.4641 1.3185 6 6 3.4390 3.7178 1.8101 7 6 3.9364 5.0073 1.8063 8 6 3.1633 6.0450 1.3197 9 6 1.8947 5.7922 0.8326 10 7 1.0672 6.9031 0.3112 11 8 -0.0508 6.6804 -0.1176 12 8 1.5043 8.0401 0.3108 13 6 1.3988 4.5016 0.8324 14 6 1.9955 -0.7660 -1.1376 15 6 3.4469 -1.1613 -0.8583 16 1 4.0296 -0.2683 -0.6319 17 6 3.4926 -2.0810 0.2900 18 7 3.5279 -2.7910 1.1762 19 6 4.0330 -1.8540 -2.0902 20 6 5.4960 -2.1332 -1.8611 21 1 5.9613 -1.8451 -0.9301 22 6 6.2392 -2.7612 -2.8380 23 7 5.6725 -3.1117 -3.9718 24 14 8.0509 -3.1142 -2.5509 25 1 8.4437 -2.6237 -1.2054 26 1 8.2892 -4.5776 -2.6338 27 1 8.8602 -2.4215 -3.5855 28 1 -0.3633 -1.0180 0.1413 29 1 -0.3634 0.6312 0.8109 30 1 -0.3634 0.3865 -0.9522 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 0.5471 2.0844 1.4264 34 1 2.0657 1.5016 2.1491 35 1 4.0415 2.9076 2.1936 36 1 4.9278 5.2047 2.1866 37 1 3.5506 7.0531 1.3198 38 1 0.4075 4.3041 0.4521 39 1 1.9524 -0.1541 -2.0386 40 1 1.3950 -1.6646 -1.2796 41 1 3.9183 -1.2068 -2.9597 42 1 3.5067 -2.7926 -2.2639 43 1 6.1953 -3.5538 -4.6589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282503604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:30 Heat of formation + Delta-G solvation = 38.003577 kcal Electronic energy + Delta-G solvation = -25221.179895 eV Core-core repulsion = 21462.367790 eV Total energy + Delta-G solvation = -3758.812105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42596 -40.06141 -38.28769 -36.81309 -35.96059 -34.05516 -33.43698 -32.24103 -31.70215 -29.21791 -27.53619 -26.86142 -25.55756 -23.95171 -22.97791 -21.96505 -21.77138 -20.94434 -19.16837 -18.84545 -17.77134 -16.98478 -16.90522 -16.55266 -16.16305 -15.52834 -15.10319 -14.98801 -14.66940 -14.46253 -13.69777 -13.62921 -13.48598 -13.15422 -12.76728 -12.60802 -12.46484 -12.17278 -12.04522 -11.92289 -11.80856 -11.72250 -11.54445 -11.38547 -11.37954 -11.26129 -11.13131 -11.05969 -10.72989 -10.56483 -10.22776 -9.96500 -9.63051 -9.51993 -9.27169 -8.51773 -8.35720 -6.15206 -4.18633 -0.46009 0.52391 1.05902 1.12700 2.87650 3.23831 3.32476 3.36070 3.65218 3.72189 3.79578 4.01989 4.12783 4.35434 4.39448 4.48297 4.52080 4.69694 4.83102 4.86649 4.97581 5.12406 5.20344 5.23130 5.29500 5.34884 5.39520 5.47929 5.58142 5.62479 5.70612 5.75311 5.84030 5.89634 5.94465 5.96785 6.18417 6.26716 6.42205 7.01050 7.01577 7.36096 7.37543 7.46410 7.79862 8.17032 8.52511 8.86328 9.47236 10.95718 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002688 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.282532 B =10414.620275 C =11205.723125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.081 4.081 5 C -0.073 4.073 6 C -0.060 4.060 7 C -0.113 4.113 8 C -0.062 4.062 9 C -0.044 4.044 10 N 0.029 4.971 11 O -0.161 6.161 12 O -0.163 6.163 13 C -0.054 4.054 14 C 0.061 3.939 15 C 0.013 3.987 16 H 0.098 0.902 17 C 0.257 3.743 18 N -0.480 5.480 19 C 0.030 3.970 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 17.000 9.504 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.118 4.118 5 C -0.074 4.074 6 C -0.078 4.078 7 C -0.132 4.132 8 C -0.081 4.081 9 C -0.126 4.126 10 N 0.548 4.452 11 O -0.377 6.377 12 O -0.379 6.379 13 C -0.073 4.073 14 C -0.067 4.067 15 C -0.009 4.009 16 H 0.116 0.884 17 C -0.060 4.060 18 N -0.157 5.157 19 C -0.008 4.008 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.529 5.529 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.979 15.078 11.351 20.490 hybrid contribution 0.579 0.736 -1.236 1.550 sum -7.400 15.814 10.115 20.178 Atomic orbital electron populations 1.22443 0.87511 1.02519 1.00243 1.61997 1.07722 1.12804 1.44377 1.22167 1.01461 0.88453 0.95244 1.20721 1.01706 0.89517 0.99906 1.19956 0.94082 0.95685 0.97675 1.21695 0.94517 0.97566 0.94069 1.21261 1.00588 0.91715 0.99601 1.21081 0.90836 1.01992 0.94219 1.21117 0.94152 0.87301 1.10065 1.43662 1.01032 1.02209 0.98284 1.94547 1.05108 1.90259 1.47807 1.94537 1.75978 1.07131 1.60242 1.20967 1.01325 0.89285 0.95725 1.22266 0.95362 0.98015 0.91065 1.19211 0.95391 0.95332 0.91010 0.88442 1.28845 0.91194 0.92972 0.92977 1.80989 1.10429 1.11354 1.12962 1.19184 0.95883 0.96086 0.89683 1.21156 0.94219 1.39230 1.01810 0.92473 1.24956 0.98592 0.95347 0.95084 1.69941 1.36317 1.40573 1.06113 0.86545 0.85125 0.78159 0.78311 1.19677 1.20926 1.20843 0.91274 0.91472 0.95415 0.89701 0.94331 0.90134 0.88991 0.83533 0.83376 0.83077 0.83092 0.92505 0.90121 0.94510 0.95556 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.36 60.07 0.56 0.76 16 2 N -0.55 -6.32 4.39 -242.92 -1.07 -7.38 16 3 C 0.05 0.53 4.77 -3.83 -0.02 0.51 16 4 C -0.08 -0.62 5.29 -27.89 -0.15 -0.77 16 5 C -0.07 -0.54 5.13 -104.63 -0.54 -1.08 16 6 C -0.06 -0.40 9.70 -39.58 -0.38 -0.78 16 7 C -0.11 -0.68 10.05 -39.58 -0.40 -1.08 16 8 C -0.06 -0.47 9.56 -39.58 -0.38 -0.85 16 9 C -0.04 -0.42 6.85 -79.95 -0.55 -0.96 16 10 N 0.03 0.35 4.45 33.96 0.15 0.50 16 11 O -0.16 -2.05 18.45 -29.46 -0.54 -2.59 16 12 O -0.16 -2.03 18.45 -29.46 -0.54 -2.58 16 13 C -0.05 -0.45 9.21 -39.58 -0.36 -0.82 16 14 C 0.06 0.84 4.36 -3.82 -0.02 0.82 16 15 C 0.01 0.22 2.26 -93.41 -0.21 0.01 16 16 H 0.10 1.56 6.66 -51.93 -0.35 1.22 16 17 C 0.26 5.09 13.66 -20.76 -0.28 4.81 16 18 N -0.48 -10.42 18.54 42.15 0.78 -9.64 16 19 C 0.03 0.67 4.42 -27.88 -0.12 0.55 16 20 C -0.53 -13.58 8.60 -34.44 -0.30 -13.88 16 21 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 24 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.53 6.15 -51.93 -0.32 0.21 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.87 6.56 -51.93 -0.34 0.53 16 32 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.08 0.55 6.34 -51.93 -0.33 0.23 16 34 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.15 0.95 7.61 -52.49 -0.40 0.55 16 38 H 0.15 1.16 7.61 -52.49 -0.40 0.76 16 39 H 0.06 0.72 8.00 -51.93 -0.42 0.31 16 40 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -31.30 374.76 -8.97 -40.27 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -5.87 Total: -4.58 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.24 Total: -11.17 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.60 Total: -40.81 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -1.09 Total: -5.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.30 -8.97 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282503604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.275 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds