Wall clock time and date at job start Tue Mar 31 2020 11:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99542 * 2 1 4 4 C 1.52997 * 109.47488 * 66.04927 * 3 2 1 5 5 C 1.50694 * 109.47310 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.00088 * 269.72162 * 5 4 3 7 7 C 1.38213 * 120.00440 * 179.79092 * 6 5 4 8 8 C 1.38254 * 119.99745 * 0.46141 * 7 6 5 9 9 C 1.38223 * 119.99889 * 359.77014 * 8 7 6 10 10 N 1.48018 * 119.99753 * 180.02562 * 9 8 7 11 11 O 1.21797 * 119.99859 * 180.02562 * 10 9 8 12 12 O 1.21809 * 120.00077 * 0.02562 * 10 9 8 13 13 C 1.38212 * 120.00211 * 89.99754 * 5 4 3 14 14 C 1.46899 * 111.00044 * 236.04433 * 2 1 3 15 15 C 1.53000 * 109.47149 * 199.60065 * 14 2 1 16 16 H 1.09001 * 109.47125 * 304.81599 * 15 14 2 17 17 C 1.47190 * 109.47038 * 64.81528 * 15 14 2 18 18 N 3.66224 * 124.20789 * 157.14767 * 2 1 3 19 19 C 1.53003 * 109.47245 * 184.81899 * 15 14 2 20 20 C 1.50697 * 109.47176 * 175.00072 * 19 15 14 21 21 H 1.07996 * 119.99767 * 359.97438 * 20 19 15 22 22 C 1.37874 * 119.99841 * 179.72475 * 20 19 15 23 23 N 1.31513 * 120.00218 * 0.26840 * 22 20 19 24 24 Si 1.86800 * 119.99772 * 180.27444 * 22 20 19 25 25 H 1.48497 * 109.47279 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47109 * 119.99923 * 24 22 20 27 27 H 1.48500 * 109.47151 * 239.99643 * 24 22 20 28 28 H 1.09004 * 109.46877 * 187.90044 * 1 2 3 29 29 H 1.08997 * 109.47622 * 307.89915 * 1 2 3 30 30 H 1.09000 * 109.47270 * 67.90852 * 1 2 3 31 31 H 1.09006 * 109.46948 * 186.04374 * 3 2 1 32 32 H 1.08995 * 109.47484 * 306.04107 * 3 2 1 33 33 H 1.09006 * 109.46574 * 299.99676 * 4 3 2 34 34 H 1.08995 * 109.47427 * 59.99146 * 4 3 2 35 35 H 1.08007 * 119.99395 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.00170 * 180.25580 * 7 6 5 37 37 H 1.07995 * 120.00245 * 179.79437 * 8 7 6 38 38 H 1.07999 * 120.00051 * 359.97438 * 13 5 4 39 39 H 1.09003 * 109.46735 * 79.59780 * 14 2 1 40 40 H 1.09003 * 109.47208 * 319.60257 * 14 2 1 41 41 H 1.08995 * 109.46874 * 54.99649 * 19 15 14 42 42 H 1.09003 * 109.46446 * 294.99854 * 19 15 14 43 43 H 0.96995 * 120.00072 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1719 3.4641 1.3185 6 6 3.4390 3.7178 1.8101 7 6 3.9364 5.0073 1.8063 8 6 3.1633 6.0450 1.3197 9 6 1.8947 5.7922 0.8326 10 7 1.0672 6.9031 0.3112 11 8 -0.0508 6.6804 -0.1176 12 8 1.5043 8.0401 0.3108 13 6 1.3988 4.5016 0.8324 14 6 1.9955 -0.7660 -1.1376 15 6 3.4469 -1.1613 -0.8583 16 1 4.0296 -0.2683 -0.6319 17 6 3.4926 -2.0810 0.2900 18 7 3.5279 -2.7910 1.1762 19 6 4.0330 -1.8540 -2.0902 20 6 5.4960 -2.1332 -1.8611 21 1 5.9613 -1.8451 -0.9301 22 6 6.2392 -2.7612 -2.8380 23 7 5.6725 -3.1117 -3.9718 24 14 8.0509 -3.1142 -2.5509 25 1 8.4437 -2.6237 -1.2054 26 1 8.2892 -4.5776 -2.6338 27 1 8.8602 -2.4215 -3.5855 28 1 -0.3633 -1.0180 0.1413 29 1 -0.3634 0.6312 0.8109 30 1 -0.3634 0.3865 -0.9522 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 0.5471 2.0844 1.4264 34 1 2.0657 1.5016 2.1491 35 1 4.0415 2.9076 2.1936 36 1 4.9278 5.2047 2.1866 37 1 3.5506 7.0531 1.3198 38 1 0.4075 4.3041 0.4521 39 1 1.9524 -0.1541 -2.0386 40 1 1.3950 -1.6646 -1.2796 41 1 3.9183 -1.2068 -2.9597 42 1 3.5067 -2.7926 -2.2639 43 1 6.1953 -3.5538 -4.6589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282503604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:29 Heat of formation + Delta-G solvation = 21.944335 kcal Electronic energy + Delta-G solvation = -25221.876276 eV Core-core repulsion = 21462.367790 eV Total energy + Delta-G solvation = -3759.508486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.25697 -40.68042 -39.33798 -37.70209 -37.34428 -35.54720 -34.57822 -33.31137 -32.80114 -29.97764 -28.94833 -27.62311 -26.66053 -25.07363 -23.64787 -23.53691 -22.72265 -21.75849 -19.91958 -19.66724 -18.61874 -18.52817 -18.21095 -17.51357 -16.91992 -16.60103 -16.33624 -15.93936 -15.79525 -15.27548 -14.76060 -14.65879 -14.38502 -14.23150 -14.05248 -13.76778 -13.69061 -13.22383 -13.14390 -13.03997 -12.93345 -12.75764 -12.64408 -12.60788 -12.50878 -12.35808 -12.32891 -12.27073 -12.22656 -11.95392 -11.57356 -11.35811 -11.08495 -10.55634 -10.53542 -10.11539 -9.24025 -8.19346 -6.27460 -1.23221 -0.02072 0.32271 0.38330 1.39303 1.42889 1.52544 2.09901 2.17147 2.30682 2.41569 2.91716 3.16649 3.37034 3.42712 3.52475 3.82366 3.93933 3.97722 4.03525 4.18237 4.21699 4.29108 4.41719 4.53871 4.63823 4.68803 4.70714 4.79951 4.81771 4.83499 4.96266 4.99087 5.04789 5.10137 5.14113 5.23803 5.35226 5.47451 5.55780 5.61981 5.79715 6.04968 6.18532 6.22300 6.45511 6.84695 6.96380 7.41469 8.91764 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002688 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.282532 B =10414.620275 C =11205.723125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.555 5.555 3 C 0.054 3.946 4 C -0.072 4.072 5 C -0.074 4.074 6 C -0.056 4.056 7 C -0.105 4.105 8 C -0.063 4.063 9 C -0.064 4.064 10 N 0.031 4.969 11 O -0.189 6.189 12 O -0.179 6.179 13 C -0.058 4.058 14 C 0.071 3.929 15 C 0.024 3.976 16 H 0.117 0.883 17 C 0.268 3.732 18 N -0.514 5.514 19 C 0.036 3.964 20 C -0.535 4.535 21 H 0.056 0.944 22 C 0.010 3.990 23 N -0.925 5.925 24 Si 0.947 3.053 25 H -0.266 1.266 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.165 0.835 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.000 1.000 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 17.690 10.686 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.279 5.279 3 C -0.074 4.074 4 C -0.109 4.109 5 C -0.076 4.076 6 C -0.074 4.074 7 C -0.123 4.123 8 C -0.082 4.082 9 C -0.147 4.147 10 N 0.545 4.455 11 O -0.401 6.401 12 O -0.393 6.393 13 C -0.077 4.077 14 C -0.058 4.058 15 C 0.003 3.997 16 H 0.135 0.865 17 C -0.048 4.048 18 N -0.192 5.192 19 C -0.003 4.003 20 C -0.573 4.573 21 H 0.074 0.926 22 C -0.189 4.189 23 N -0.565 5.565 24 Si 0.773 3.227 25 H -0.191 1.191 26 H -0.213 1.213 27 H -0.200 1.200 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.183 0.817 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.018 0.982 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.118 15.792 12.533 21.380 hybrid contribution 0.342 0.488 -1.561 1.671 sum -6.775 16.280 10.972 20.768 Atomic orbital electron populations 1.22484 0.86097 1.02679 1.01410 1.61930 1.09023 1.13804 1.43152 1.22217 1.01090 0.87547 0.96555 1.20620 1.02337 0.89273 0.98704 1.19942 0.94472 0.95171 0.97992 1.22019 0.94112 0.98412 0.92835 1.21607 1.01458 0.90876 0.98404 1.21361 0.90122 1.03139 0.93624 1.21322 0.94798 0.86779 1.11797 1.44022 1.01033 1.02656 0.97823 1.94527 1.06104 1.90405 1.49017 1.94509 1.75973 1.08166 1.60686 1.21052 1.01666 0.89126 0.95863 1.22066 0.92818 0.98544 0.92420 1.19140 0.98015 0.94750 0.87845 0.86525 1.29285 0.90088 0.92528 0.92888 1.80991 1.11761 1.12209 1.14207 1.19005 0.94214 0.95252 0.91817 1.21576 0.95988 1.38354 1.01412 0.92566 1.25718 1.02447 0.95606 0.95089 1.70038 1.37748 1.41732 1.06950 0.85659 0.80847 0.77632 0.78537 1.19050 1.21324 1.19970 0.91909 0.89619 0.94687 0.90215 0.93935 0.89250 0.88938 0.81729 0.80382 0.82105 0.82961 0.91339 0.90657 0.94901 0.98187 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.36 127.69 1.20 1.55 16 2 N -0.56 -11.67 4.39 -922.46 -4.05 -15.71 16 3 C 0.05 0.90 4.77 86.30 0.41 1.31 16 4 C -0.07 -0.91 5.29 29.85 0.16 -0.76 16 5 C -0.07 -0.93 5.13 -19.87 -0.10 -1.03 16 6 C -0.06 -0.55 9.70 22.27 0.22 -0.34 16 7 C -0.11 -0.92 10.05 22.27 0.22 -0.70 16 8 C -0.06 -0.83 9.56 22.27 0.21 -0.62 16 9 C -0.06 -1.15 6.85 36.38 0.25 -0.90 16 10 N 0.03 0.73 4.45 -46.46 -0.21 0.53 16 11 O -0.19 -4.92 18.45 18.89 0.35 -4.57 16 12 O -0.18 -4.49 18.45 18.87 0.35 -4.14 16 13 C -0.06 -0.89 9.21 22.27 0.21 -0.69 16 14 C 0.07 1.82 4.36 86.30 0.38 2.19 16 15 C 0.02 0.81 2.26 -12.60 -0.03 0.78 16 16 H 0.12 3.47 6.66 -2.39 -0.02 3.46 16 17 C 0.27 10.35 13.66 89.44 1.22 11.57 16 18 N -0.51 -21.89 18.54 20.00 0.37 -21.52 16 19 C 0.04 1.59 4.42 29.85 0.13 1.72 16 20 C -0.54 -27.34 8.60 25.60 0.22 -27.12 16 21 H 0.06 2.83 7.59 -2.91 -0.02 2.80 16 22 C 0.01 0.54 5.46 84.65 0.46 1.01 16 23 N -0.92 -52.16 13.29 21.45 0.28 -51.88 16 24 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.09 1.13 6.15 -2.39 -0.01 1.12 16 30 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 1.42 6.56 -2.38 -0.02 1.41 16 32 H 0.04 0.69 8.12 -2.39 -0.02 0.68 16 33 H 0.09 0.98 6.34 -2.38 -0.02 0.97 16 34 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 35 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 37 H 0.16 1.73 7.61 -2.91 -0.02 1.71 16 38 H 0.15 2.22 7.61 -2.91 -0.02 2.20 16 39 H 0.07 1.62 8.00 -2.39 -0.02 1.60 16 40 H 0.07 2.02 7.94 -2.39 -0.02 2.00 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -67.34 374.76 5.30 -62.04 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.02 Total: 2.97 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.15 Total: -12.00 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -3.60 Total: -88.58 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.70 Total: -8.72 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -67.34 5.30 -62.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282503604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.987 kcal (2) G-P(sol) polarization free energy of solvation -67.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds