Wall clock time and date at job start Tue Mar 31 2020 11:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46892 * 110.99949 * 2 1 4 4 C 1.52996 * 109.47362 * 66.04896 * 3 2 1 5 5 C 1.50699 * 109.47561 * 180.02562 * 4 3 2 6 6 C 1.38248 * 120.00441 * 98.36978 * 5 4 3 7 7 C 1.38209 * 120.00171 * 180.27929 * 6 5 4 8 8 C 1.38264 * 120.00120 * 359.49177 * 7 6 5 9 9 C 1.38207 * 119.99480 * 0.48772 * 8 7 6 10 10 C 1.38216 * 119.99461 * 278.39722 * 5 4 3 11 11 N 1.48018 * 120.00410 * 359.97438 * 10 5 4 12 12 O 1.21799 * 120.00266 * 185.68418 * 11 10 5 13 13 O 1.21802 * 119.99607 * 5.68237 * 11 10 5 14 14 C 1.46905 * 111.00040 * 236.04713 * 2 1 3 15 15 C 1.52998 * 109.47327 * 200.00425 * 14 2 1 16 16 H 1.09002 * 109.47092 * 303.54714 * 15 14 2 17 17 C 1.47207 * 109.47186 * 63.54206 * 15 14 2 18 18 N 3.64365 * 124.13644 * 156.34341 * 2 1 3 19 19 C 1.53002 * 109.47263 * 183.53916 * 15 14 2 20 20 C 1.50695 * 109.46904 * 174.99839 * 19 15 14 21 21 H 1.08004 * 120.00541 * 0.02562 * 20 19 15 22 22 C 1.37878 * 119.99959 * 180.02562 * 20 19 15 23 23 N 1.31515 * 120.00247 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99902 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46866 * 90.00365 * 24 22 20 26 26 H 1.48499 * 109.47307 * 209.99883 * 24 22 20 27 27 H 1.48495 * 109.47053 * 330.00602 * 24 22 20 28 28 H 1.08999 * 109.47055 * 64.36276 * 1 2 3 29 29 H 1.09010 * 109.47100 * 184.36179 * 1 2 3 30 30 H 1.08998 * 109.46992 * 304.35877 * 1 2 3 31 31 H 1.08998 * 109.47007 * 306.04211 * 3 2 1 32 32 H 1.09004 * 109.47035 * 186.04783 * 3 2 1 33 33 H 1.08995 * 109.47186 * 59.99943 * 4 3 2 34 34 H 1.09004 * 109.46953 * 299.99937 * 4 3 2 35 35 H 1.08003 * 120.00009 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.00499 * 179.72756 * 7 6 5 37 37 H 1.07994 * 120.00090 * 180.25610 * 8 7 6 38 38 H 1.08000 * 119.99926 * 179.76917 * 9 8 7 39 39 H 1.09006 * 109.47178 * 320.00243 * 14 2 1 40 40 H 1.09001 * 109.47261 * 80.00292 * 14 2 1 41 41 H 1.08991 * 109.47278 * 295.00237 * 19 15 14 42 42 H 1.09003 * 109.46800 * 55.00157 * 19 15 14 43 43 H 0.97004 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1710 3.4645 1.3180 6 6 1.3416 4.5228 0.9965 7 6 1.8379 5.8127 0.9907 8 6 3.1612 6.0458 1.3167 9 6 3.9902 4.9878 1.6385 10 6 3.4952 3.6969 1.6387 11 7 4.3832 2.5638 1.9829 12 8 5.5200 2.7754 2.3655 13 8 3.9770 1.4198 1.8836 14 6 1.9955 -0.7660 -1.1376 15 6 3.4436 -1.1699 -0.8541 16 1 4.0353 -0.2786 -0.6455 17 6 3.4832 -2.0688 0.3110 18 7 3.5137 -2.7624 1.2101 19 6 4.0203 -1.8909 -2.0742 20 6 5.4811 -2.1798 -1.8429 21 1 5.9512 -1.8796 -0.9181 22 6 6.2176 -2.8274 -2.8121 23 7 7.4926 -3.0791 -2.6105 24 14 5.4044 -3.3473 -4.4114 25 1 5.5229 -2.2509 -5.4062 26 1 6.0746 -4.5648 -4.9346 27 1 3.9694 -3.6392 -4.1651 28 1 -0.3633 0.4446 -0.9265 29 1 -0.3634 -1.0248 0.0782 30 1 -0.3633 0.5800 0.8483 31 1 1.5611 1.9272 -0.8309 32 1 3.0797 1.3443 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0844 1.4265 35 1 0.3069 4.3412 0.7459 36 1 1.1912 6.6391 0.7353 37 1 3.5479 7.0541 1.3162 38 1 5.0248 5.1695 1.8895 39 1 1.3907 -1.6610 -1.2841 40 1 1.9591 -0.1516 -2.0373 41 1 3.4848 -2.8275 -2.2294 42 1 3.9099 -1.2589 -2.9554 43 1 8.0106 -3.5350 -3.2922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285163485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:33 Heat of formation + Delta-G solvation = 55.876513 kcal Electronic energy + Delta-G solvation = -26515.373166 eV Core-core repulsion = 22757.336089 eV Total energy + Delta-G solvation = -3758.037076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20219 -39.83553 -38.24670 -36.56656 -35.71642 -33.83320 -33.23797 -32.18400 -31.68874 -29.31215 -27.79801 -26.58324 -25.38699 -23.81673 -22.85923 -21.94750 -21.32915 -20.86890 -19.11243 -18.43341 -17.44923 -16.89018 -16.73893 -16.53745 -16.16321 -15.41842 -15.05667 -14.88371 -14.72617 -14.11402 -13.72530 -13.55853 -13.43859 -13.13246 -12.82099 -12.57079 -12.33074 -12.19617 -12.03382 -11.90337 -11.76425 -11.50684 -11.35722 -11.27508 -11.18834 -11.08471 -10.85376 -10.58648 -10.40441 -10.25006 -9.94483 -9.82326 -9.66821 -9.48396 -9.21380 -8.53374 -8.22769 -6.01312 -4.01196 -0.27083 0.55973 1.25691 1.41797 2.92174 3.30484 3.39286 3.40568 3.76472 3.92566 4.02151 4.03234 4.17524 4.33745 4.45399 4.54853 4.55916 4.85069 4.88636 4.95913 5.05330 5.18878 5.25530 5.33006 5.35929 5.39787 5.43921 5.54811 5.66299 5.66857 5.73680 5.83614 5.92061 5.96636 5.99814 6.04734 6.31943 6.44084 6.53450 7.00129 7.10981 7.12077 7.24881 7.73134 7.73395 8.51982 8.77494 9.05168 9.58380 11.11950 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003684 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.383252 B = 7598.143542 C = 8222.142839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.537 5.537 3 C 0.068 3.932 4 C -0.098 4.098 5 C -0.010 4.010 6 C -0.121 4.121 7 C -0.068 4.068 8 C -0.126 4.126 9 C -0.053 4.053 10 C -0.042 4.042 11 N 0.022 4.978 12 O -0.171 6.171 13 O -0.126 6.126 14 C 0.061 3.939 15 C 0.023 3.977 16 H 0.104 0.896 17 C 0.259 3.741 18 N -0.472 5.472 19 C -0.006 4.006 20 C -0.524 4.524 21 H 0.076 0.924 22 C 0.071 3.929 23 N -0.897 5.897 24 Si 0.876 3.124 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.264 1.264 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.025 0.975 42 H 0.029 0.971 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.130 22.119 4.550 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.260 5.260 3 C -0.060 4.060 4 C -0.135 4.135 5 C -0.012 4.012 6 C -0.140 4.140 7 C -0.086 4.086 8 C -0.145 4.145 9 C -0.072 4.072 10 C -0.125 4.125 11 N 0.540 4.460 12 O -0.382 6.382 13 O -0.345 6.345 14 C -0.068 4.068 15 C 0.001 3.999 16 H 0.121 0.879 17 C -0.058 4.058 18 N -0.149 5.149 19 C -0.045 4.045 20 C -0.562 4.562 21 H 0.094 0.906 22 C -0.131 4.131 23 N -0.535 5.535 24 Si 0.703 3.297 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.155 21.313 6.106 28.032 hybrid contribution -0.192 0.191 -1.908 1.927 sum -17.348 21.503 4.198 27.946 Atomic orbital electron populations 1.22438 0.87752 1.02363 0.99983 1.61871 1.07260 1.12827 1.44061 1.22021 1.01685 0.88186 0.94107 1.21101 1.01252 0.89397 1.01791 1.19934 0.90449 0.98243 0.92595 1.21168 1.00510 0.91353 1.00925 1.21604 0.95583 0.97333 0.94118 1.21200 0.93593 0.99157 1.00528 1.21116 1.02000 0.89633 0.94495 1.21089 0.91457 0.87280 1.12657 1.43615 1.01254 1.02332 0.98777 1.94550 1.03632 1.91351 1.48669 1.94623 1.77951 1.06353 1.55608 1.22271 0.95596 0.97879 0.91034 1.18909 0.95208 0.95959 0.89833 0.87868 1.28507 0.91444 0.92775 0.93092 1.80962 1.10077 1.11508 1.12356 1.19643 0.97635 0.95719 0.91477 1.21064 0.92103 1.38377 1.04670 0.90567 1.24989 0.94650 0.95193 0.98282 1.69917 1.07095 1.41763 1.34760 0.86846 0.80270 0.78457 0.84144 1.20209 1.21346 1.18867 0.95818 0.91278 0.91542 0.95011 0.89620 0.86928 0.90272 0.83803 0.84167 0.83761 0.82959 0.90145 0.92900 0.95704 0.95267 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.54 -7.06 4.35 -242.92 -1.06 -8.12 16 3 C 0.07 0.82 4.27 -3.83 -0.02 0.80 16 4 C -0.10 -1.02 4.54 -27.89 -0.13 -1.15 16 5 C -0.01 -0.10 5.13 -104.63 -0.54 -0.63 16 6 C -0.12 -0.77 9.67 -39.59 -0.38 -1.15 16 7 C -0.07 -0.34 10.05 -39.58 -0.40 -0.74 16 8 C -0.13 -0.72 10.05 -39.58 -0.40 -1.12 16 9 C -0.05 -0.46 9.56 -39.58 -0.38 -0.84 16 10 C -0.04 -0.47 6.83 -79.95 -0.55 -1.02 16 11 N 0.02 0.33 4.45 33.96 0.15 0.48 16 12 O -0.17 -2.83 18.46 -29.46 -0.54 -3.37 16 13 O -0.13 -2.15 13.51 -29.46 -0.40 -2.55 16 14 C 0.06 0.89 4.38 -3.82 -0.02 0.87 16 15 C 0.02 0.44 2.26 -93.40 -0.21 0.23 16 16 H 0.10 2.01 6.71 -51.93 -0.35 1.66 16 17 C 0.26 5.74 13.63 -20.76 -0.28 5.46 16 18 N -0.47 -11.39 18.54 42.15 0.78 -10.61 16 19 C -0.01 -0.13 3.49 -27.88 -0.10 -0.23 16 20 C -0.52 -14.72 9.15 -34.44 -0.32 -15.03 16 21 H 0.08 2.38 7.84 -52.48 -0.41 1.96 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 24 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 28 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.71 8.08 -51.92 -0.42 0.29 16 30 H 0.07 0.57 6.28 -51.93 -0.33 0.24 16 31 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.09 1.24 5.04 -51.93 -0.26 0.97 16 33 H 0.11 1.45 5.95 -51.93 -0.31 1.15 16 34 H 0.08 0.64 6.34 -51.93 -0.33 0.31 16 35 H 0.14 0.58 8.05 -52.48 -0.42 0.16 16 36 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 37 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.15 1.20 7.62 -52.49 -0.40 0.80 16 39 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 40 H 0.05 0.68 7.99 -51.93 -0.42 0.27 16 41 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 42 H 0.03 0.61 7.57 -51.93 -0.39 0.21 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -35.22 362.56 -8.42 -43.64 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.68 Total: -2.52 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -3.24 Total: -11.81 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.65 Total: -45.32 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.94 Total: -5.92 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.22 -8.42 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285163485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.514 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds