Wall clock time and date at job start Tue Mar 31 2020 11:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46892 * 110.99949 * 2 1 4 4 C 1.52996 * 109.47362 * 66.04896 * 3 2 1 5 5 C 1.50699 * 109.47561 * 180.02562 * 4 3 2 6 6 C 1.38248 * 120.00441 * 98.36978 * 5 4 3 7 7 C 1.38209 * 120.00171 * 180.27929 * 6 5 4 8 8 C 1.38264 * 120.00120 * 359.49177 * 7 6 5 9 9 C 1.38207 * 119.99480 * 0.48772 * 8 7 6 10 10 C 1.38216 * 119.99461 * 278.39722 * 5 4 3 11 11 N 1.48018 * 120.00410 * 359.97438 * 10 5 4 12 12 O 1.21799 * 120.00266 * 185.68418 * 11 10 5 13 13 O 1.21802 * 119.99607 * 5.68237 * 11 10 5 14 14 C 1.46905 * 111.00040 * 236.04713 * 2 1 3 15 15 C 1.52998 * 109.47327 * 200.00425 * 14 2 1 16 16 H 1.09002 * 109.47092 * 303.54714 * 15 14 2 17 17 C 1.47207 * 109.47186 * 63.54206 * 15 14 2 18 18 N 3.64365 * 124.13644 * 156.34341 * 2 1 3 19 19 C 1.53002 * 109.47263 * 183.53916 * 15 14 2 20 20 C 1.50695 * 109.46904 * 174.99839 * 19 15 14 21 21 H 1.08004 * 120.00541 * 0.02562 * 20 19 15 22 22 C 1.37878 * 119.99959 * 180.02562 * 20 19 15 23 23 N 1.31515 * 120.00247 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99902 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46866 * 90.00365 * 24 22 20 26 26 H 1.48499 * 109.47307 * 209.99883 * 24 22 20 27 27 H 1.48495 * 109.47053 * 330.00602 * 24 22 20 28 28 H 1.08999 * 109.47055 * 64.36276 * 1 2 3 29 29 H 1.09010 * 109.47100 * 184.36179 * 1 2 3 30 30 H 1.08998 * 109.46992 * 304.35877 * 1 2 3 31 31 H 1.08998 * 109.47007 * 306.04211 * 3 2 1 32 32 H 1.09004 * 109.47035 * 186.04783 * 3 2 1 33 33 H 1.08995 * 109.47186 * 59.99943 * 4 3 2 34 34 H 1.09004 * 109.46953 * 299.99937 * 4 3 2 35 35 H 1.08003 * 120.00009 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.00499 * 179.72756 * 7 6 5 37 37 H 1.07994 * 120.00090 * 180.25610 * 8 7 6 38 38 H 1.08000 * 119.99926 * 179.76917 * 9 8 7 39 39 H 1.09006 * 109.47178 * 320.00243 * 14 2 1 40 40 H 1.09001 * 109.47261 * 80.00292 * 14 2 1 41 41 H 1.08991 * 109.47278 * 295.00237 * 19 15 14 42 42 H 1.09003 * 109.46800 * 55.00157 * 19 15 14 43 43 H 0.97004 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1710 3.4645 1.3180 6 6 1.3416 4.5228 0.9965 7 6 1.8379 5.8127 0.9907 8 6 3.1612 6.0458 1.3167 9 6 3.9902 4.9878 1.6385 10 6 3.4952 3.6969 1.6387 11 7 4.3832 2.5638 1.9829 12 8 5.5200 2.7754 2.3655 13 8 3.9770 1.4198 1.8836 14 6 1.9955 -0.7660 -1.1376 15 6 3.4436 -1.1699 -0.8541 16 1 4.0353 -0.2786 -0.6455 17 6 3.4832 -2.0688 0.3110 18 7 3.5137 -2.7624 1.2101 19 6 4.0203 -1.8909 -2.0742 20 6 5.4811 -2.1798 -1.8429 21 1 5.9512 -1.8796 -0.9181 22 6 6.2176 -2.8274 -2.8121 23 7 7.4926 -3.0791 -2.6105 24 14 5.4044 -3.3473 -4.4114 25 1 5.5229 -2.2509 -5.4062 26 1 6.0746 -4.5648 -4.9346 27 1 3.9694 -3.6392 -4.1651 28 1 -0.3633 0.4446 -0.9265 29 1 -0.3634 -1.0248 0.0782 30 1 -0.3633 0.5800 0.8483 31 1 1.5611 1.9272 -0.8309 32 1 3.0797 1.3443 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0844 1.4265 35 1 0.3069 4.3412 0.7459 36 1 1.1912 6.6391 0.7353 37 1 3.5479 7.0541 1.3162 38 1 5.0248 5.1695 1.8895 39 1 1.3907 -1.6610 -1.2841 40 1 1.9591 -0.1516 -2.0373 41 1 3.4848 -2.8275 -2.2294 42 1 3.9099 -1.2589 -2.9554 43 1 8.0106 -3.5350 -3.2922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285163485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:32 Heat of formation + Delta-G solvation = 33.163397 kcal Electronic energy + Delta-G solvation = -26516.358080 eV Core-core repulsion = 22757.336089 eV Total energy + Delta-G solvation = -3759.021991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.22762 -40.52524 -39.36815 -37.76911 -37.21606 -35.49328 -34.44945 -33.44915 -32.82441 -30.17938 -29.28210 -27.50981 -26.51670 -24.92070 -23.61465 -23.23649 -22.80266 -21.81685 -19.96239 -19.49591 -18.91099 -18.51480 -18.26308 -17.25229 -16.92653 -16.52765 -16.05062 -15.87604 -15.74324 -15.48060 -14.98400 -14.74094 -14.38630 -14.19962 -14.13651 -13.83791 -13.77501 -13.32047 -13.11945 -13.09479 -12.97093 -12.68748 -12.66247 -12.45529 -12.42169 -12.39974 -12.23651 -12.09543 -11.85676 -11.61765 -11.50982 -11.37293 -11.16904 -10.72731 -10.52826 -10.08991 -9.14016 -8.23548 -6.30054 -1.19710 0.02213 0.35222 0.52311 1.41183 1.45540 1.56440 2.13879 2.21015 2.36498 2.41756 2.92555 3.12128 3.38125 3.41387 3.49128 3.81698 4.00859 4.07225 4.08515 4.11498 4.21653 4.32221 4.40796 4.50739 4.65273 4.67135 4.67689 4.77472 4.80457 4.89085 4.91676 5.00572 5.06527 5.17683 5.18478 5.21561 5.23402 5.37756 5.45383 5.63858 5.65839 6.11954 6.27240 6.29508 6.49660 6.77853 6.98929 7.33865 8.94147 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003684 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.383252 B = 7598.143542 C = 8222.142839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.561 5.561 3 C 0.072 3.928 4 C -0.091 4.091 5 C -0.022 4.022 6 C -0.113 4.113 7 C -0.046 4.046 8 C -0.115 4.115 9 C -0.069 4.069 10 C -0.071 4.071 11 N 0.028 4.972 12 O -0.215 6.215 13 O -0.168 6.168 14 C 0.071 3.929 15 C 0.026 3.974 16 H 0.093 0.907 17 C 0.269 3.731 18 N -0.516 5.516 19 C -0.001 4.001 20 C -0.534 4.534 21 H 0.020 0.980 22 C 0.001 3.999 23 N -0.956 5.956 24 Si 0.954 3.046 25 H -0.256 1.256 26 H -0.293 1.293 27 H -0.234 1.234 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.060 0.940 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.962 25.347 1.887 33.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.285 5.285 3 C -0.056 4.056 4 C -0.128 4.128 5 C -0.024 4.024 6 C -0.131 4.131 7 C -0.064 4.064 8 C -0.133 4.133 9 C -0.088 4.088 10 C -0.154 4.154 11 N 0.536 4.464 12 O -0.420 6.420 13 O -0.382 6.382 14 C -0.057 4.057 15 C 0.004 3.996 16 H 0.111 0.889 17 C -0.047 4.047 18 N -0.194 5.194 19 C -0.040 4.040 20 C -0.572 4.572 21 H 0.038 0.962 22 C -0.196 4.196 23 N -0.597 5.597 24 Si 0.776 3.224 25 H -0.181 1.181 26 H -0.219 1.219 27 H -0.157 1.157 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.196 0.804 36 H 0.204 0.796 37 H 0.196 0.804 38 H 0.165 0.835 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.986 24.533 3.475 33.126 hybrid contribution 1.300 -0.602 -0.983 1.738 sum -20.685 23.931 2.493 31.730 Atomic orbital electron populations 1.22480 0.85290 1.02717 1.01769 1.61739 1.09485 1.13539 1.43746 1.21946 0.99725 0.88093 0.95798 1.20964 1.02641 0.89600 0.99644 1.20071 0.89904 0.98823 0.93627 1.21604 1.01434 0.90776 0.99288 1.22188 0.95393 0.97986 0.90822 1.21671 0.93719 0.99493 0.98458 1.21363 1.02684 0.89443 0.95307 1.21393 0.91777 0.86312 1.15941 1.44252 1.01316 1.03165 0.97628 1.94500 1.05532 1.91574 1.50409 1.94606 1.78038 1.08536 1.57058 1.22128 0.91907 0.99143 0.92569 1.19016 0.98858 0.94372 0.87325 0.88930 1.29248 0.90026 0.92269 0.93203 1.80938 1.11802 1.13000 1.13665 1.19579 0.93663 0.96939 0.93829 1.21400 0.95311 1.37912 1.02560 0.96181 1.26122 0.95125 0.95151 1.03152 1.70120 1.09436 1.43483 1.36622 0.85612 0.80352 0.78121 0.78306 1.18075 1.21932 1.15660 0.93602 0.91718 0.90037 0.92546 0.93111 0.90478 0.87299 0.80407 0.79640 0.80371 0.83458 0.89113 0.90204 0.94939 0.92145 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.32 127.69 1.19 1.60 16 2 N -0.56 -13.92 4.35 -922.46 -4.01 -17.93 16 3 C 0.07 1.65 4.27 86.30 0.37 2.02 16 4 C -0.09 -1.81 4.54 29.85 0.14 -1.67 16 5 C -0.02 -0.39 5.13 -19.87 -0.10 -0.49 16 6 C -0.11 -0.89 9.67 22.27 0.22 -0.68 16 7 C -0.05 -0.19 10.05 22.27 0.22 0.03 16 8 C -0.12 -0.86 10.05 22.27 0.22 -0.64 16 9 C -0.07 -1.15 9.56 22.27 0.21 -0.94 16 10 C -0.07 -1.65 6.83 36.38 0.25 -1.40 16 11 N 0.03 0.94 4.45 -46.46 -0.21 0.73 16 12 O -0.22 -8.06 18.46 18.89 0.35 -7.71 16 13 O -0.17 -6.45 13.51 18.88 0.26 -6.19 16 14 C 0.07 1.93 4.38 86.30 0.38 2.31 16 15 C 0.03 1.03 2.26 -12.60 -0.03 1.00 16 16 H 0.09 3.83 6.71 -2.39 -0.02 3.81 16 17 C 0.27 12.44 13.63 89.44 1.22 13.66 16 18 N -0.52 -26.21 18.54 20.01 0.37 -25.84 16 19 C 0.00 -0.05 3.49 29.85 0.10 0.05 16 20 C -0.53 -31.14 9.15 25.60 0.23 -30.90 16 21 H 0.02 1.34 7.84 -2.91 -0.02 1.32 16 22 C 0.00 0.04 5.47 84.65 0.46 0.51 16 23 N -0.96 -62.06 13.96 21.45 0.30 -61.76 16 24 Si 0.95 43.05 27.47 68.60 1.88 44.94 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.23 -9.35 6.54 99.48 0.65 -8.70 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 1.15 8.08 -2.38 -0.02 1.13 16 30 H 0.08 1.10 6.28 -2.39 -0.02 1.09 16 31 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.05 1.53 5.04 -2.38 -0.01 1.52 16 33 H 0.08 2.12 5.95 -2.39 -0.01 2.11 16 34 H 0.11 1.41 6.34 -2.38 -0.02 1.40 16 35 H 0.18 0.24 8.05 -2.91 -0.02 0.21 16 36 H 0.19 -0.76 8.06 -2.91 -0.02 -0.79 16 37 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 38 H 0.15 2.49 7.62 -2.91 -0.02 2.47 16 39 H 0.09 2.28 7.89 -2.38 -0.02 2.26 16 40 H 0.08 1.75 7.99 -2.39 -0.02 1.73 16 41 H 0.03 1.39 7.20 -2.39 -0.02 1.38 16 42 H 0.06 2.32 7.57 -2.39 -0.02 2.31 16 43 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -86.90 362.56 5.00 -81.90 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.98 Total: 7.39 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.09 Total: -15.53 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.55 Total: -104.80 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.60 Total: -13.90 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Total: -86.90 5.00 -81.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285163485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.068 kcal (2) G-P(sol) polarization free energy of solvation -86.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds