Wall clock time and date at job start Tue Mar 31 2020 11:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99830 * 2 1 4 4 N 1.46493 * 109.47210 * 125.00130 * 3 2 1 5 5 C 1.46506 * 119.99891 * 269.99787 * 4 3 2 6 6 C 1.50697 * 109.47318 * 269.99717 * 5 4 3 7 7 H 1.08002 * 119.99485 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00443 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99426 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00338 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47640 * 59.99811 * 10 8 6 12 12 H 1.48500 * 109.47342 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47026 * 299.99548 * 10 8 6 14 14 C 1.34779 * 120.00347 * 89.99490 * 4 3 2 15 15 O 1.21592 * 119.99920 * 180.02562 * 14 4 3 16 16 N 1.34773 * 119.99871 * 0.02562 * 14 4 3 17 17 C 1.39943 * 119.99951 * 174.59356 * 16 14 4 18 18 C 1.38942 * 120.02901 * 147.04987 * 17 16 14 19 19 C 1.38141 * 120.06939 * 180.02562 * 18 17 16 20 20 C 1.38182 * 120.13842 * 0.02562 * 19 18 17 21 21 C 1.38907 * 120.07115 * 359.95807 * 20 19 18 22 22 N 1.39921 * 120.03916 * 180.02562 * 21 20 19 23 23 C 1.34772 * 119.99802 * 326.62969 * 22 21 20 24 24 C 1.50703 * 119.99528 * 174.87963 * 23 22 21 25 25 O 1.21288 * 120.00602 * 354.87960 * 23 22 21 26 26 C 1.38715 * 120.03788 * 326.78332 * 17 16 14 27 27 H 1.08002 * 120.00282 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.00174 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00052 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47260 * 4.99895 * 3 2 1 31 31 H 1.09003 * 109.46909 * 244.99528 * 3 2 1 32 32 H 1.08999 * 109.47060 * 29.99728 * 5 4 3 33 33 H 1.09006 * 109.47205 * 149.99729 * 5 4 3 34 34 H 0.97000 * 119.99321 * 179.97438 * 9 8 6 35 35 H 0.97002 * 119.99907 * 354.87436 * 16 14 4 36 36 H 1.08002 * 119.96952 * 359.97438 * 18 17 16 37 37 H 1.07994 * 119.93254 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.96920 * 179.97438 * 20 19 18 39 39 H 0.97000 * 119.99468 * 146.62349 * 22 21 20 40 40 H 1.08994 * 109.47370 * 0.02562 * 24 23 22 41 41 H 1.09004 * 109.47288 * 119.99900 * 24 23 22 42 42 H 1.08998 * 109.47413 * 239.99639 * 24 23 22 43 43 H 1.07997 * 120.06699 * 359.97114 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8369 1.6367 8 6 2.5193 4.0666 3.6085 9 7 1.9599 3.4658 4.6360 10 14 2.8725 5.8996 3.6771 11 1 2.1358 6.5869 2.5862 12 1 2.4317 6.4400 4.9882 13 1 4.3302 6.1294 3.5113 14 6 4.2497 0.8662 0.9824 15 8 5.0216 0.8880 1.9216 16 7 4.6499 0.3762 -0.2076 17 6 5.9840 -0.0023 -0.3955 18 6 6.2940 -1.0623 -1.2386 19 6 7.6106 -1.4369 -1.4243 20 6 8.6232 -0.7595 -0.7722 21 6 8.3200 0.3013 0.0717 22 7 9.3459 0.9871 0.7313 23 6 10.4529 0.3270 1.1251 24 6 11.6062 1.0845 1.7310 25 8 10.5211 -0.8766 0.9919 26 6 6.9987 0.6840 0.2554 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5401 0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6967 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7317 3.9744 5.4299 35 1 4.0141 0.2897 -0.9351 36 1 5.5047 -1.5945 -1.7487 37 1 7.8490 -2.2608 -2.0804 38 1 9.6516 -1.0550 -0.9190 39 1 9.2603 1.9376 0.9049 40 1 11.3635 2.1464 1.7693 41 1 11.7914 0.7179 2.7407 42 1 12.4980 0.9370 1.1218 43 1 6.7606 1.5113 0.9075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291651027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:47 Heat of formation + Delta-G solvation = -3.200733 kcal Electronic energy + Delta-G solvation = -26058.329976 eV Core-core repulsion = 22297.731119 eV Total energy + Delta-G solvation = -3760.598858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64781 -39.87375 -38.15525 -35.86454 -35.11262 -33.94701 -33.13433 -32.13241 -30.87083 -29.61559 -28.45325 -27.35706 -25.53110 -23.52122 -22.66955 -22.22385 -20.49806 -19.99685 -19.28915 -18.27922 -17.19513 -17.06370 -16.51915 -16.11645 -15.84754 -15.48719 -15.00329 -14.84984 -14.62113 -14.28526 -13.92107 -13.74137 -13.45997 -13.36887 -12.90516 -12.82107 -12.63421 -12.42239 -12.20258 -11.92525 -11.74697 -11.52582 -11.31633 -11.14223 -10.94945 -10.62728 -10.53573 -10.21034 -10.09786 -9.76504 -9.65044 -9.29890 -9.26131 -8.45820 -8.20983 -7.90820 -7.60960 -6.06655 -4.11742 1.35990 1.58300 2.36649 2.51938 2.97870 3.26961 3.28848 3.33741 3.36875 3.70161 4.10978 4.35555 4.49593 4.58532 4.92896 5.06456 5.13834 5.17000 5.27132 5.28110 5.33022 5.41500 5.46921 5.51820 5.62773 5.68179 5.83309 5.93249 6.10060 6.32357 6.36362 6.52973 6.57884 6.72670 6.78733 6.79673 6.90048 7.27981 7.34382 7.35850 7.47514 7.63829 7.90912 8.02643 8.20104 8.52797 8.88711 9.19391 9.53485 11.01242 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003964 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.995218 B = 7062.007444 C = 9230.890944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.602 5.602 5 C 0.262 3.738 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.697 3.303 15 O -0.565 6.565 16 N -0.696 5.696 17 C 0.200 3.800 18 C -0.171 4.171 19 C -0.083 4.083 20 C -0.148 4.148 21 C 0.161 3.839 22 N -0.670 5.670 23 C 0.510 3.490 24 C -0.170 4.170 25 O -0.530 6.530 26 C -0.147 4.147 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.412 0.588 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.300 -5.239 -13.586 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.336 5.336 5 C 0.143 3.857 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.399 3.601 15 O -0.441 6.441 16 N -0.345 5.345 17 C 0.103 3.897 18 C -0.192 4.192 19 C -0.102 4.102 20 C -0.169 4.169 21 C 0.066 3.934 22 N -0.315 5.315 23 C 0.299 3.701 24 C -0.229 4.229 25 O -0.406 6.406 26 C -0.170 4.170 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.248 0.752 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.806 -5.940 -12.680 17.094 hybrid contribution -0.408 1.439 -0.050 1.497 sum 9.399 -4.500 -12.729 16.451 Atomic orbital electron populations 1.23830 0.95798 1.01846 1.00054 1.23456 0.96563 0.98951 1.00362 1.20548 0.93218 0.95703 0.89354 1.47597 1.08975 1.62752 1.14266 1.19234 0.95280 0.93547 0.77661 1.21403 1.40698 0.93351 1.01246 0.92522 1.24920 0.95067 0.98696 0.95312 1.69929 1.41893 1.36264 1.05160 0.86563 0.78746 0.84936 0.77165 1.20280 1.21177 1.20259 1.15965 0.83315 0.78628 0.82152 1.90916 1.52897 1.61355 1.38928 1.43007 1.08849 1.68025 1.14618 1.17208 0.83115 0.92968 0.96379 1.20810 0.97205 0.97410 1.03808 1.20694 0.91669 0.98992 0.98891 1.20968 1.00304 0.97753 0.97855 1.17523 0.87100 0.95117 0.93627 1.43674 1.17421 1.12972 1.57456 1.20965 0.83559 0.88159 0.77432 1.21852 0.96702 1.01041 1.03314 1.90736 1.80981 1.14518 1.54355 1.20972 0.89592 1.03248 1.03231 0.88709 0.88200 0.87759 0.88978 0.91401 0.94767 0.93742 0.92637 0.76091 0.85920 0.85673 0.85252 0.75158 0.90237 0.88377 0.88463 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.01 0.42 -1.79 16 2 C -0.17 -2.37 9.85 -36.03 -0.35 -2.73 16 3 C 0.14 2.11 5.57 -5.20 -0.03 2.08 16 4 N -0.60 -12.45 2.44 -182.18 -0.44 -12.89 16 5 C 0.26 6.73 5.16 -5.19 -0.03 6.70 16 6 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 10 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 C 0.70 14.60 8.01 -86.92 -0.70 13.90 16 15 O -0.57 -14.25 13.60 5.29 0.07 -14.18 16 16 N -0.70 -11.16 5.18 -14.24 -0.07 -11.23 16 17 C 0.20 3.18 6.28 -83.72 -0.53 2.65 16 18 C -0.17 -2.23 9.96 -39.36 -0.39 -2.62 16 19 C -0.08 -1.05 10.03 -39.64 -0.40 -1.45 16 20 C -0.15 -2.11 8.65 -39.35 -0.34 -2.45 16 21 C 0.16 2.42 6.28 -83.72 -0.53 1.90 16 22 N -0.67 -8.31 5.34 -9.88 -0.05 -8.36 16 23 C 0.51 6.30 7.68 -10.99 -0.08 6.22 16 24 C -0.17 -1.25 10.39 36.01 0.37 -0.87 16 25 O -0.53 -8.65 14.78 5.55 0.08 -8.57 16 26 C -0.15 -2.49 8.57 -39.21 -0.34 -2.83 16 27 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.10 1.21 7.84 -52.48 -0.41 0.80 16 29 H 0.10 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.08 16 31 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.40 5.10 6.62 -40.82 -0.27 4.83 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.84 6.41 -52.49 -0.34 1.51 16 39 H 0.41 3.97 8.66 -40.82 -0.35 3.61 16 40 H 0.08 0.41 7.92 -51.93 -0.41 0.00 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.14 2.76 6.41 -52.49 -0.34 2.42 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -35.69 369.22 -8.22 -43.91 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.74 Total: 9.39 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -3.34 Total: 5.44 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.17 Total: -57.95 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.15 Total: -22.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.69 -8.22 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291651027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.705 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds