Wall clock time and date at job start Tue Mar 31 2020 11:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99830 * 2 1 4 4 N 1.46493 * 109.47210 * 125.00130 * 3 2 1 5 5 C 1.46506 * 119.99891 * 269.99787 * 4 3 2 6 6 C 1.50697 * 109.47318 * 269.99717 * 5 4 3 7 7 H 1.08002 * 119.99485 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00443 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99426 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00338 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47640 * 59.99811 * 10 8 6 12 12 H 1.48500 * 109.47342 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47026 * 299.99548 * 10 8 6 14 14 C 1.34779 * 120.00347 * 89.99490 * 4 3 2 15 15 O 1.21592 * 119.99920 * 180.02562 * 14 4 3 16 16 N 1.34773 * 119.99871 * 0.02562 * 14 4 3 17 17 C 1.39943 * 119.99951 * 174.59356 * 16 14 4 18 18 C 1.38942 * 120.02901 * 147.04987 * 17 16 14 19 19 C 1.38141 * 120.06939 * 180.02562 * 18 17 16 20 20 C 1.38182 * 120.13842 * 0.02562 * 19 18 17 21 21 C 1.38907 * 120.07115 * 359.95807 * 20 19 18 22 22 N 1.39921 * 120.03916 * 180.02562 * 21 20 19 23 23 C 1.34772 * 119.99802 * 326.62969 * 22 21 20 24 24 C 1.50703 * 119.99528 * 174.87963 * 23 22 21 25 25 O 1.21288 * 120.00602 * 354.87960 * 23 22 21 26 26 C 1.38715 * 120.03788 * 326.78332 * 17 16 14 27 27 H 1.08002 * 120.00282 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.00174 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00052 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47260 * 4.99895 * 3 2 1 31 31 H 1.09003 * 109.46909 * 244.99528 * 3 2 1 32 32 H 1.08999 * 109.47060 * 29.99728 * 5 4 3 33 33 H 1.09006 * 109.47205 * 149.99729 * 5 4 3 34 34 H 0.97000 * 119.99321 * 179.97438 * 9 8 6 35 35 H 0.97002 * 119.99907 * 354.87436 * 16 14 4 36 36 H 1.08002 * 119.96952 * 359.97438 * 18 17 16 37 37 H 1.07994 * 119.93254 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.96920 * 179.97438 * 20 19 18 39 39 H 0.97000 * 119.99468 * 146.62349 * 22 21 20 40 40 H 1.08994 * 109.47370 * 0.02562 * 24 23 22 41 41 H 1.09004 * 109.47288 * 119.99900 * 24 23 22 42 42 H 1.08998 * 109.47413 * 239.99639 * 24 23 22 43 43 H 1.07997 * 120.06699 * 359.97114 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8369 1.6367 8 6 2.5193 4.0666 3.6085 9 7 1.9599 3.4658 4.6360 10 14 2.8725 5.8996 3.6771 11 1 2.1358 6.5869 2.5862 12 1 2.4317 6.4400 4.9882 13 1 4.3302 6.1294 3.5113 14 6 4.2497 0.8662 0.9824 15 8 5.0216 0.8880 1.9216 16 7 4.6499 0.3762 -0.2076 17 6 5.9840 -0.0023 -0.3955 18 6 6.2940 -1.0623 -1.2386 19 6 7.6106 -1.4369 -1.4243 20 6 8.6232 -0.7595 -0.7722 21 6 8.3200 0.3013 0.0717 22 7 9.3459 0.9871 0.7313 23 6 10.4529 0.3270 1.1251 24 6 11.6062 1.0845 1.7310 25 8 10.5211 -0.8766 0.9919 26 6 6.9987 0.6840 0.2554 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5401 0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6967 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7317 3.9744 5.4299 35 1 4.0141 0.2897 -0.9351 36 1 5.5047 -1.5945 -1.7487 37 1 7.8490 -2.2608 -2.0804 38 1 9.6516 -1.0550 -0.9190 39 1 9.2603 1.9376 0.9049 40 1 11.3635 2.1464 1.7693 41 1 11.7914 0.7179 2.7407 42 1 12.4980 0.9370 1.1218 43 1 6.7606 1.5113 0.9075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291651027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:45 Heat of formation + Delta-G solvation = -27.180616 kcal Electronic energy + Delta-G solvation = -26059.369822 eV Core-core repulsion = 22297.731119 eV Total energy + Delta-G solvation = -3761.638703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.89799 -41.17198 -39.38149 -37.34299 -36.39280 -35.34185 -34.82066 -33.72477 -31.78208 -30.91804 -29.58260 -28.99336 -26.96452 -25.27694 -23.75063 -23.62304 -21.71599 -21.14804 -20.66142 -19.52132 -18.72630 -18.49194 -18.07727 -17.30446 -17.17414 -16.63361 -16.51357 -16.30255 -15.91221 -15.79282 -15.16316 -14.87856 -14.85951 -14.58094 -14.32601 -14.12461 -13.82495 -13.41763 -13.32298 -13.15368 -13.14229 -12.92141 -12.83125 -12.65085 -12.57076 -12.28279 -12.19907 -11.79887 -11.68834 -11.19855 -11.00726 -10.82212 -10.63153 -10.35329 -9.61940 -9.32220 -8.90134 -8.20582 -6.35654 0.25511 0.39748 1.25050 1.37881 1.41265 1.48990 1.54262 1.77875 2.11821 2.19880 2.39943 2.90667 3.03743 3.09904 3.76163 3.98655 4.03575 4.18799 4.23149 4.27692 4.32930 4.39742 4.50005 4.55750 4.62483 4.68601 4.77758 4.92625 5.03474 5.03890 5.18093 5.28899 5.33405 5.38427 5.47370 5.51112 5.60556 5.69234 5.74280 5.90736 6.06648 6.07868 6.10445 6.40768 6.72904 7.02006 7.06584 7.31324 7.61057 8.85986 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003964 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.995218 B = 7062.007444 C = 9230.890944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.133 3.867 4 N -0.606 5.606 5 C 0.282 3.718 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.695 3.305 15 O -0.618 6.618 16 N -0.673 5.673 17 C 0.177 3.823 18 C -0.157 4.157 19 C -0.074 4.074 20 C -0.155 4.155 21 C 0.150 3.850 22 N -0.668 5.668 23 C 0.504 3.496 24 C -0.160 4.160 25 O -0.575 6.575 26 C -0.171 4.171 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.025 0.975 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.420 0.580 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.130 0.870 39 H 0.423 0.577 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 -5.231 -15.845 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.011 3.989 4 N -0.340 5.340 5 C 0.160 3.840 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.396 3.604 15 O -0.498 6.498 16 N -0.324 5.324 17 C 0.080 3.920 18 C -0.179 4.179 19 C -0.093 4.093 20 C -0.176 4.176 21 C 0.055 3.945 22 N -0.314 5.314 23 C 0.295 3.705 24 C -0.219 4.219 25 O -0.454 6.454 26 C -0.194 4.194 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.176 0.824 37 H 0.180 0.820 38 H 0.147 0.853 39 H 0.261 0.739 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.134 0.866 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.052 -5.922 -15.021 19.020 hybrid contribution -0.482 1.366 0.612 1.573 sum 9.570 -4.556 -14.409 17.887 Atomic orbital electron populations 1.24063 0.95456 1.02985 0.97627 1.23326 0.96951 0.98078 1.02481 1.20802 0.92778 0.96795 0.88572 1.47417 1.09954 1.62548 1.14042 1.18630 0.93786 0.92524 0.79053 1.21671 1.40652 0.94350 1.01417 0.92787 1.25825 0.94646 1.03643 0.94798 1.70055 1.42765 1.38181 1.05756 0.85484 0.78500 0.79088 0.77828 1.18488 1.20486 1.20279 1.16119 0.82804 0.78518 0.82910 1.90878 1.54342 1.63390 1.41148 1.42612 1.09501 1.66967 1.13336 1.17510 0.82399 0.94327 0.97719 1.21122 0.98425 0.95956 1.02359 1.21142 0.90913 0.99072 0.98185 1.21167 1.00959 0.97594 0.97866 1.17688 0.87043 0.95681 0.94060 1.43802 1.17047 1.13562 1.56995 1.21917 0.84145 0.87952 0.76474 1.21906 0.94974 1.01763 1.03294 1.90702 1.81833 1.16561 1.56286 1.20831 0.91065 1.03452 1.04053 0.86553 0.88090 0.87002 0.89740 0.88244 0.95658 0.98556 0.92435 0.73964 0.82435 0.81978 0.85257 0.73917 0.87757 0.87805 0.86597 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 14.32 67.78 0.97 -2.77 16 2 C -0.19 -4.88 9.85 25.65 0.25 -4.63 16 3 C 0.13 4.03 5.57 85.63 0.48 4.51 16 4 N -0.61 -25.74 2.44 -848.56 -2.07 -27.81 16 5 C 0.28 15.17 5.16 85.63 0.44 15.61 16 6 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.57 5.46 84.65 0.46 1.03 16 9 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 10 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 11 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 C 0.69 30.01 8.01 179.05 1.43 31.44 16 15 O -0.62 -33.06 13.60 -4.00 -0.05 -33.12 16 16 N -0.67 -21.35 5.18 -317.23 -1.64 -22.99 16 17 C 0.18 5.54 6.28 38.13 0.24 5.78 16 18 C -0.16 -3.71 9.96 22.42 0.22 -3.49 16 19 C -0.07 -1.68 10.03 22.23 0.22 -1.45 16 20 C -0.15 -4.29 8.65 22.42 0.19 -4.10 16 21 C 0.15 4.61 6.28 38.14 0.24 4.85 16 22 N -0.67 -16.88 5.34 -303.56 -1.62 -18.50 16 23 C 0.50 12.38 7.68 87.66 0.67 13.05 16 24 C -0.16 -2.11 10.39 71.24 0.74 -1.37 16 25 O -0.57 -18.92 14.78 -3.05 -0.05 -18.96 16 26 C -0.17 -6.00 8.57 22.51 0.19 -5.81 16 27 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 29 H 0.11 2.74 8.06 -2.91 -0.02 2.71 16 30 H 0.08 2.69 7.72 -2.39 -0.02 2.67 16 31 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 32 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 33 H 0.00 -0.23 7.42 -2.38 -0.02 -0.25 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.42 9.88 6.62 -92.71 -0.61 9.27 16 36 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.13 3.60 6.41 -2.91 -0.02 3.58 16 39 H 0.42 8.38 8.66 -92.71 -0.80 7.58 16 40 H 0.10 0.85 7.92 -2.39 -0.02 0.83 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.12 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.11 4.61 6.41 -2.91 -0.02 4.59 16 Total: -1.00 -82.42 369.22 3.51 -78.91 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.37 Total: 29.73 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 7.00 Total: 22.01 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -5.05 Total: -124.85 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.10 Total: -52.08 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -82.42 3.51 -78.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291651027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.730 kcal (2) G-P(sol) polarization free energy of solvation -82.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds