Wall clock time and date at job start Tue Mar 31 2020 11:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35983 * 116.99985 * 2 1 4 4 C 1.39221 * 119.79471 * 0.02562 * 3 2 1 5 5 C 1.37787 * 120.40765 * 179.97438 * 4 3 2 6 6 C 1.38812 * 119.89445 * 359.97438 * 5 4 3 7 7 C 1.40463 * 120.03036 * 0.02562 * 6 5 4 8 8 C 1.38022 * 119.79471 * 179.97438 * 3 2 1 9 9 N 1.35797 * 106.95426 * 180.02562 * 7 6 5 10 10 C 1.30118 * 109.66807 * 359.97438 * 9 7 6 11 11 C 1.50700 * 124.94949 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.46769 * 90.02767 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47398 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99463 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99943 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 89.99798 * 21 19 17 23 23 H 1.48502 * 109.47495 * 210.00312 * 21 19 17 24 24 H 1.48502 * 109.47376 * 329.99929 * 21 19 17 25 25 N 1.35997 * 110.10561 * 0.27349 * 10 9 7 26 26 C 1.46504 * 126.35607 * 179.73540 * 25 10 9 27 27 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47002 * 299.99715 * 1 2 3 29 29 H 1.09005 * 109.47040 * 59.99638 * 1 2 3 30 30 H 1.08010 * 119.79998 * 359.95366 * 4 3 2 31 31 H 1.08000 * 120.05123 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.14140 * 0.02626 * 8 3 2 33 33 H 1.09004 * 109.47210 * 330.03125 * 11 10 9 34 34 H 1.08994 * 109.47121 * 210.03094 * 11 10 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 36 36 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 37 37 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 38 38 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 39 39 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 40 40 H 0.97000 * 120.00920 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.47314 * 90.02132 * 26 25 10 42 42 H 1.08996 * 109.46771 * 210.01781 * 26 25 10 43 43 H 1.08999 * 109.46769 * 330.01538 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2840 2.3765 0.0005 5 6 1.8963 3.6108 0.0011 6 6 3.2818 3.6957 0.0016 7 6 4.0579 2.5249 0.0011 8 6 3.4250 1.2789 0.0005 9 7 5.3594 2.9125 0.0024 10 6 5.4294 4.2118 0.0031 11 6 6.7093 5.0074 0.0052 12 7 7.1254 5.2664 -1.3754 13 6 8.2480 5.9709 -1.6199 14 8 8.9165 6.3861 -0.6971 15 6 8.6728 6.2428 -3.0401 16 6 9.9695 7.0547 -3.0380 17 6 10.3939 7.3270 -4.4582 18 1 9.7985 6.9575 -5.2800 19 6 11.5429 8.0469 -4.7083 20 7 11.9130 8.2850 -5.9476 21 14 12.5739 8.6841 -3.2870 22 1 13.5895 7.6660 -2.9166 23 1 13.2562 9.9388 -3.6937 24 1 11.6956 8.9543 -2.1204 25 7 4.1793 4.7474 0.0084 26 6 3.8456 6.1739 0.0163 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2058 2.3123 0.0002 31 1 1.2993 4.5108 0.0011 32 1 4.0122 0.3725 0.0005 33 1 7.4872 4.4429 0.5193 34 1 6.5475 5.9545 0.5197 35 1 6.5906 4.9346 -2.1135 36 1 8.8371 5.2975 -3.5574 37 1 7.8919 6.8058 -3.5514 38 1 9.8056 7.9999 -2.5206 39 1 10.7502 6.4912 -2.5268 40 1 12.7211 8.7918 -6.1237 41 1 3.7603 6.5327 -1.0094 42 1 2.8976 6.3223 0.5331 43 1 4.6307 6.7278 0.5310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291891584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:30 Heat of formation + Delta-G solvation = -1.301643 kcal Electronic energy + Delta-G solvation = -25040.217423 eV Core-core repulsion = 21279.700916 eV Total energy + Delta-G solvation = -3760.516507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54869 -39.90073 -39.28963 -36.58563 -34.68157 -34.52880 -33.50150 -31.41242 -30.91430 -30.01368 -27.88218 -27.51322 -26.84049 -25.53313 -22.58081 -22.21724 -21.32733 -20.53994 -19.75244 -18.55629 -17.58366 -17.40067 -16.81550 -16.49802 -16.04577 -15.98938 -15.82949 -15.42837 -15.21974 -14.47133 -14.15231 -13.98884 -13.69476 -13.56582 -13.40666 -13.32130 -13.20904 -12.76670 -12.67898 -12.55992 -12.36030 -12.22929 -11.51663 -11.43718 -11.16038 -10.97055 -10.51373 -10.23747 -10.19271 -10.06892 -9.80612 -9.39474 -9.19182 -9.07808 -8.55720 -8.51181 -8.12801 -6.03254 -4.02295 0.47450 1.18087 2.17760 2.27263 2.83356 3.01753 3.37595 3.38182 3.44523 3.54483 3.55815 3.84670 4.05844 4.30146 4.42786 4.50452 4.62023 4.71398 4.73904 4.74651 4.85467 4.93550 5.03769 5.06575 5.15420 5.26150 5.31116 5.32119 5.55036 5.61517 5.87381 5.99616 6.04186 6.07124 6.08327 6.27265 6.36766 6.65842 6.71657 7.03245 7.34637 7.41495 7.55096 7.61279 7.77887 8.46117 8.55669 8.99613 9.59500 11.09504 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.002096 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.103825 B =13357.365252 C =13587.852085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.116 3.884 4 C -0.179 4.179 5 C -0.069 4.069 6 C 0.019 3.981 7 C 0.085 3.915 8 C -0.102 4.102 9 N -0.477 5.477 10 C 0.279 3.721 11 C 0.199 3.801 12 N -0.738 5.738 13 C 0.515 3.485 14 O -0.536 6.536 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.526 4.526 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.261 1.261 25 N -0.484 5.484 26 C 0.075 3.925 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.402 0.598 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.957 -11.259 14.353 33.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.069 3.931 4 C -0.199 4.199 5 C -0.090 4.090 6 C -0.089 4.089 7 C -0.034 4.034 8 C -0.123 4.123 9 N -0.197 5.197 10 C 0.013 3.987 11 C 0.073 3.927 12 N -0.394 5.394 13 C 0.304 3.696 14 O -0.412 6.412 15 C -0.161 4.161 16 C -0.036 4.036 17 C -0.564 4.564 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.542 5.542 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.185 1.185 25 N -0.174 5.174 26 C -0.067 4.067 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.600 -11.455 14.939 32.587 hybrid contribution -0.725 0.926 0.272 1.207 sum -27.325 -10.529 15.210 32.998 Atomic orbital electron populations 1.23056 0.78396 1.04008 1.01255 1.86093 1.21245 1.26399 1.89241 1.18440 0.91504 0.84203 0.99002 1.20991 0.99976 0.91264 1.07645 1.19684 0.89930 0.97882 1.01487 1.18814 0.92430 0.88059 1.09570 1.18597 0.89078 0.92264 1.03485 1.19194 0.90907 0.96046 1.06156 1.70488 1.18624 1.08940 1.21693 1.23560 0.86532 0.89446 0.99170 1.19590 0.88889 0.97781 0.86415 1.46156 1.27999 1.58399 1.06800 1.21598 0.78652 0.75879 0.93447 1.90673 1.52993 1.50688 1.46822 1.21680 1.01682 1.02874 0.89817 1.19380 0.91276 0.95243 0.97750 1.21105 1.09289 1.34850 0.91113 0.90923 1.24973 0.97285 0.95491 0.95513 1.69907 1.24785 1.40655 1.18843 0.86791 0.80804 0.78479 0.83435 1.20201 1.21475 1.18543 1.45176 1.05397 1.06697 1.60162 1.22070 1.03322 0.77249 1.04073 0.88204 0.92702 0.92645 0.84634 0.85574 0.84337 0.87850 0.89567 0.76347 0.89345 0.89515 0.95796 0.96147 0.92707 0.90177 0.89634 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.82 10.49 -19.69 -0.21 -3.03 16 3 C 0.12 1.12 6.67 -39.30 -0.26 0.86 16 4 C -0.18 -1.39 9.02 -39.38 -0.36 -1.74 16 5 C -0.07 -0.56 10.04 -39.53 -0.40 -0.96 16 6 C 0.02 0.21 6.87 -83.92 -0.58 -0.37 16 7 C 0.09 1.09 7.22 -84.71 -0.61 0.47 16 8 C -0.10 -1.18 10.03 -39.09 -0.39 -1.57 16 9 N -0.48 -6.61 11.27 -8.25 -0.09 -6.71 16 10 C 0.28 3.26 7.22 -154.85 -1.12 2.14 16 11 C 0.20 2.32 5.96 -5.19 -0.03 2.29 16 12 N -0.74 -9.59 5.55 -61.47 -0.34 -9.93 16 13 C 0.52 8.92 7.83 -10.98 -0.09 8.84 16 14 O -0.54 -11.26 15.98 5.55 0.09 -11.17 16 15 C -0.12 -2.27 5.64 -27.89 -0.16 -2.43 16 16 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 17 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 21 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 25 N -0.48 -4.72 3.21 -118.47 -0.38 -5.10 16 26 C 0.07 0.45 10.96 59.85 0.66 1.11 16 27 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.19 7.65 -51.93 -0.40 -0.21 16 29 H 0.05 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.14 0.66 6.26 -52.48 -0.33 0.33 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 0.89 7.00 -51.93 -0.36 0.53 16 35 H 0.40 4.55 8.46 -40.82 -0.35 4.20 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 39 H 0.02 0.52 7.53 -51.92 -0.39 0.13 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.49 6.99 -51.93 -0.36 0.13 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -36.51 364.37 -8.13 -44.63 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.93 Total: -1.20 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.86 Total: -3.63 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.04 Total: -48.87 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.12 Total: -14.20 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.51 -8.13 -44.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291891584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.333 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds