Wall clock time and date at job start Tue Mar 31 2020 11:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35983 * 116.99985 * 2 1 4 4 C 1.39221 * 119.79471 * 0.02562 * 3 2 1 5 5 C 1.37787 * 120.40765 * 179.97438 * 4 3 2 6 6 C 1.38812 * 119.89445 * 359.97438 * 5 4 3 7 7 C 1.40463 * 120.03036 * 0.02562 * 6 5 4 8 8 C 1.38022 * 119.79471 * 179.97438 * 3 2 1 9 9 N 1.35797 * 106.95426 * 180.02562 * 7 6 5 10 10 C 1.30118 * 109.66807 * 359.97438 * 9 7 6 11 11 C 1.50700 * 124.94949 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.46769 * 90.02767 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47398 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99463 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99943 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 89.99798 * 21 19 17 23 23 H 1.48502 * 109.47495 * 210.00312 * 21 19 17 24 24 H 1.48502 * 109.47376 * 329.99929 * 21 19 17 25 25 N 1.35997 * 110.10561 * 0.27349 * 10 9 7 26 26 C 1.46504 * 126.35607 * 179.73540 * 25 10 9 27 27 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47002 * 299.99715 * 1 2 3 29 29 H 1.09005 * 109.47040 * 59.99638 * 1 2 3 30 30 H 1.08010 * 119.79998 * 359.95366 * 4 3 2 31 31 H 1.08000 * 120.05123 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.14140 * 0.02626 * 8 3 2 33 33 H 1.09004 * 109.47210 * 330.03125 * 11 10 9 34 34 H 1.08994 * 109.47121 * 210.03094 * 11 10 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 36 36 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 37 37 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 38 38 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 39 39 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 40 40 H 0.97000 * 120.00920 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.47314 * 90.02132 * 26 25 10 42 42 H 1.08996 * 109.46771 * 210.01781 * 26 25 10 43 43 H 1.08999 * 109.46769 * 330.01538 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2840 2.3765 0.0005 5 6 1.8963 3.6108 0.0011 6 6 3.2818 3.6957 0.0016 7 6 4.0579 2.5249 0.0011 8 6 3.4250 1.2789 0.0005 9 7 5.3594 2.9125 0.0024 10 6 5.4294 4.2118 0.0031 11 6 6.7093 5.0074 0.0052 12 7 7.1254 5.2664 -1.3754 13 6 8.2480 5.9709 -1.6199 14 8 8.9165 6.3861 -0.6971 15 6 8.6728 6.2428 -3.0401 16 6 9.9695 7.0547 -3.0380 17 6 10.3939 7.3270 -4.4582 18 1 9.7985 6.9575 -5.2800 19 6 11.5429 8.0469 -4.7083 20 7 11.9130 8.2850 -5.9476 21 14 12.5739 8.6841 -3.2870 22 1 13.5895 7.6660 -2.9166 23 1 13.2562 9.9388 -3.6937 24 1 11.6956 8.9543 -2.1204 25 7 4.1793 4.7474 0.0084 26 6 3.8456 6.1739 0.0163 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2058 2.3123 0.0002 31 1 1.2993 4.5108 0.0011 32 1 4.0122 0.3725 0.0005 33 1 7.4872 4.4429 0.5193 34 1 6.5475 5.9545 0.5197 35 1 6.5906 4.9346 -2.1135 36 1 8.8371 5.2975 -3.5574 37 1 7.8919 6.8058 -3.5514 38 1 9.8056 7.9999 -2.5206 39 1 10.7502 6.4912 -2.5268 40 1 12.7211 8.7918 -6.1237 41 1 3.7603 6.5327 -1.0094 42 1 2.8976 6.3223 0.5331 43 1 4.6307 6.7278 0.5310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291891584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:29 Heat of formation + Delta-G solvation = -27.022684 kcal Electronic energy + Delta-G solvation = -25041.332771 eV Core-core repulsion = 21279.700916 eV Total energy + Delta-G solvation = -3761.631855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.31803 -40.77842 -40.42041 -37.32361 -35.82162 -35.47445 -35.30570 -33.34835 -31.56024 -31.01683 -28.72078 -28.33831 -27.48808 -27.00746 -23.55664 -22.93899 -22.90223 -21.46818 -21.08662 -19.24083 -19.20727 -18.22659 -17.90952 -17.59578 -17.06367 -16.75860 -16.66776 -16.43599 -16.29711 -16.15962 -15.22830 -14.93949 -14.82188 -14.67534 -14.50514 -14.18798 -14.09973 -14.01583 -13.70464 -13.38806 -13.31865 -13.15676 -12.89802 -12.87748 -12.10799 -12.08027 -11.95355 -11.80831 -11.74362 -11.38485 -11.19249 -11.04825 -10.87779 -10.76656 -10.25481 -9.33888 -8.83452 -8.29729 -6.32886 -0.26494 0.46086 1.35819 1.37296 1.38819 1.51616 1.52023 1.63835 2.22753 2.36668 2.37448 2.74585 3.00429 3.06122 3.37750 3.79214 3.82932 3.92254 4.04197 4.11863 4.25572 4.31342 4.35705 4.40193 4.44779 4.47712 4.50454 4.52000 4.64508 4.69849 4.78178 4.92854 5.00081 5.20402 5.21519 5.28707 5.38939 5.39417 5.46958 5.54588 5.62654 6.00641 6.24590 6.42663 6.44548 6.73767 6.74110 7.19362 7.32467 8.85901 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.002096 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.103825 B =13357.365252 C =13587.852085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.118 3.882 4 C -0.171 4.171 5 C -0.061 4.061 6 C 0.010 3.990 7 C 0.053 3.947 8 C -0.135 4.135 9 N -0.516 5.516 10 C 0.271 3.729 11 C 0.204 3.796 12 N -0.716 5.716 13 C 0.525 3.475 14 O -0.576 6.576 15 C -0.116 4.116 16 C 0.004 3.996 17 C -0.530 4.530 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.945 5.945 21 Si 0.940 3.060 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.257 1.257 25 N -0.475 5.475 26 C 0.065 3.935 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.413 0.587 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.267 0.733 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.894 -10.572 15.627 36.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.071 3.929 4 C -0.191 4.191 5 C -0.081 4.081 6 C -0.098 4.098 7 C -0.066 4.066 8 C -0.156 4.156 9 N -0.238 5.238 10 C 0.005 3.995 11 C 0.079 3.921 12 N -0.371 5.371 13 C 0.314 3.686 14 O -0.454 6.454 15 C -0.156 4.156 16 C -0.034 4.034 17 C -0.568 4.568 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.585 5.585 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.181 1.181 25 N -0.165 5.165 26 C -0.075 4.075 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.249 0.751 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.598 -10.778 16.206 35.424 hybrid contribution -0.005 0.591 -0.167 0.614 sum -29.603 -10.188 16.039 35.177 Atomic orbital electron populations 1.23396 0.76047 1.05666 1.02631 1.86078 1.23732 1.26334 1.88987 1.18572 0.91061 0.85352 0.97913 1.21386 1.01552 0.90238 1.05898 1.20121 0.88973 0.99394 0.99650 1.19103 0.93418 0.87488 1.09838 1.18854 0.89179 0.93564 1.05017 1.19260 0.92117 0.95538 1.08708 1.70376 1.20019 1.10380 1.23040 1.23318 0.87166 0.89018 0.99993 1.19581 0.88792 0.98544 0.85154 1.45841 1.26548 1.56570 1.08122 1.21104 0.79303 0.76088 0.92124 1.90664 1.54539 1.52723 1.47518 1.21496 0.99677 1.02830 0.91578 1.19238 0.93743 0.95616 0.94760 1.21442 1.08825 1.33968 0.92520 0.93311 1.25830 0.98802 0.96060 0.97905 1.70026 1.25683 1.41957 1.20860 0.85808 0.79239 0.78246 0.80294 1.19610 1.20479 1.18070 1.45312 1.04425 1.07912 1.58844 1.22411 1.04876 0.75009 1.05214 0.86664 0.91153 0.91264 0.81145 0.82017 0.85731 0.89013 0.87680 0.75087 0.88297 0.87582 0.96590 0.97237 0.92428 0.89215 0.87155 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.67 10.49 -93.36 -0.98 -6.65 16 3 C 0.12 2.19 6.67 22.45 0.15 2.34 16 4 C -0.17 -2.14 9.02 22.40 0.20 -1.94 16 5 C -0.06 -0.80 10.04 22.30 0.22 -0.57 16 6 C 0.01 0.20 6.87 38.81 0.27 0.47 16 7 C 0.05 1.38 7.22 39.44 0.28 1.66 16 8 C -0.14 -3.26 10.03 22.59 0.23 -3.03 16 9 N -0.52 -14.70 11.27 -180.00 -2.03 -16.73 16 10 C 0.27 6.18 7.22 137.93 1.00 7.18 16 11 C 0.20 4.60 5.96 85.63 0.51 5.11 16 12 N -0.72 -17.68 5.55 -466.79 -2.59 -20.27 16 13 C 0.53 17.60 7.83 87.66 0.69 18.28 16 14 O -0.58 -23.75 15.98 -3.04 -0.05 -23.80 16 15 C -0.12 -4.25 5.64 29.85 0.17 -4.08 16 16 C 0.00 0.22 3.33 29.85 0.10 0.31 16 17 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 18 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 19 C 0.01 0.68 5.47 84.65 0.46 1.15 16 20 N -0.94 -59.13 13.96 21.44 0.30 -58.83 16 21 Si 0.94 46.38 27.47 68.60 1.88 48.27 16 22 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.26 -12.39 6.54 99.48 0.65 -11.74 16 25 N -0.48 -8.38 3.21 -528.74 -1.70 -10.08 16 26 C 0.07 0.58 10.96 127.77 1.40 1.98 16 27 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.25 7.65 -2.39 -0.02 0.23 16 29 H 0.07 0.27 7.65 -2.38 -0.02 0.25 16 30 H 0.17 0.87 6.26 -2.91 -0.02 0.85 16 31 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.11 2.00 7.00 -2.39 -0.02 1.98 16 35 H 0.41 8.69 8.46 -92.71 -0.78 7.90 16 36 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.02 0.79 7.16 -2.39 -0.02 0.77 16 39 H 0.01 0.47 7.53 -2.38 -0.02 0.45 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.10 0.76 6.99 -2.39 -0.02 0.75 16 Total: -1.00 -81.28 364.37 2.08 -79.21 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.20 Total: 8.91 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 7.04 Total: -0.02 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -6.02 Total: -105.91 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.03 Total: -30.45 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal Total: -81.28 2.08 -79.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291891584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.184 kcal (2) G-P(sol) polarization free energy of solvation -81.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds