Wall clock time and date at job start Tue Mar 31 2020 11:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99530 * 2 1 4 4 N 1.46501 * 109.46899 * 124.99519 * 3 2 1 5 5 C 1.46499 * 120.00230 * 269.99230 * 4 3 2 6 6 C 1.50700 * 109.47354 * 270.00300 * 5 4 3 7 7 H 1.08000 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99712 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00229 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99755 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47020 * 59.99875 * 10 8 6 12 12 H 1.48497 * 109.47073 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46946 * 299.99990 * 10 8 6 14 14 C 1.34778 * 119.99672 * 89.99875 * 4 3 2 15 15 O 1.21590 * 119.99553 * 179.97438 * 14 4 3 16 16 N 1.34771 * 120.00513 * 359.97438 * 14 4 3 17 17 C 1.39975 * 120.00350 * 184.59235 * 16 14 4 18 18 C 1.38989 * 120.00133 * 144.88319 * 17 16 14 19 19 C 1.38206 * 120.22613 * 180.02562 * 18 17 16 20 20 C 1.38023 * 120.22430 * 359.97438 * 19 18 17 21 21 C 1.39581 * 119.99226 * 0.05263 * 20 19 18 22 22 C 1.47858 * 120.10988 * 179.97438 * 21 20 19 23 23 O 1.21556 * 119.99756 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00370 * 359.95333 * 22 21 20 25 25 C 1.46489 * 120.00106 * 180.02562 * 24 22 21 26 26 C 1.38589 * 119.99853 * 324.90485 * 17 16 14 27 27 H 1.07994 * 120.00507 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99870 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.00110 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.47589 * 4.99397 * 3 2 1 31 31 H 1.09002 * 109.46757 * 244.99190 * 3 2 1 32 32 H 1.08999 * 109.46603 * 30.00442 * 5 4 3 33 33 H 1.09001 * 109.46683 * 149.99858 * 5 4 3 34 34 H 0.97001 * 120.00463 * 179.97438 * 9 8 6 35 35 H 0.96999 * 119.99990 * 4.59361 * 16 14 4 36 36 H 1.08002 * 119.88427 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.89178 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.00780 * 180.02562 * 20 19 18 39 39 H 0.96999 * 119.99586 * 359.97438 * 24 22 21 40 40 H 1.09000 * 109.47678 * 59.99794 * 25 24 22 41 41 H 1.09005 * 109.47320 * 179.97438 * 25 24 22 42 42 H 1.09004 * 109.47076 * 299.99474 * 25 24 22 43 43 H 1.08001 * 120.11043 * 359.70584 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5586 1.8652 2.4249 6 6 2.8440 3.3439 2.4803 7 1 3.3031 3.8372 1.6364 8 6 2.5181 4.0670 3.6081 9 7 1.9586 3.4663 4.6355 10 14 2.8712 5.9001 3.6766 11 1 2.1354 6.5870 2.5848 12 1 2.4304 6.4404 4.9876 13 1 4.3291 6.1298 3.5119 14 6 4.2495 0.8663 0.9825 15 8 5.0217 0.8891 1.9215 16 7 4.6496 0.3755 -0.2071 17 6 5.9208 -0.1960 -0.3368 18 6 6.1120 -1.2807 -1.1845 19 6 7.3651 -1.8488 -1.3156 20 6 8.4352 -1.3426 -0.6060 21 6 8.2535 -0.2539 0.2484 22 6 9.3980 0.2902 1.0103 23 8 9.2375 1.2387 1.7534 24 7 10.6189 -0.2657 0.8811 25 6 11.7526 0.2730 1.6364 26 6 6.9887 0.3196 0.3805 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0894 31 1 2.6213 1.4026 -0.9314 32 1 1.4885 1.6969 2.5458 33 1 3.0987 1.3605 3.2260 34 1 1.7297 3.9749 5.4291 35 1 4.0567 0.4182 -0.9736 36 1 5.2785 -1.6809 -1.7427 37 1 7.5074 -2.6918 -1.9756 38 1 9.4129 -1.7890 -0.7114 39 1 10.7468 -1.0230 0.2886 40 1 11.5437 0.2043 2.7040 41 1 12.6496 -0.3013 1.4044 42 1 11.9083 1.3166 1.3630 43 1 6.8431 1.1651 1.0364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292536693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:41 Heat of formation + Delta-G solvation = 0.435027 kcal Electronic energy + Delta-G solvation = -26064.724857 eV Core-core repulsion = 22304.283658 eV Total energy + Delta-G solvation = -3760.441199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52515 -39.61552 -38.08324 -35.82738 -34.76359 -34.39191 -33.12707 -32.11092 -31.18703 -29.63916 -27.45309 -26.93502 -25.51192 -23.52948 -23.33429 -22.00721 -20.51196 -20.08931 -19.30756 -18.55719 -17.34644 -16.56576 -16.23203 -16.13846 -15.92029 -15.22911 -15.06297 -14.96976 -14.58846 -14.31008 -13.94717 -13.69434 -13.56100 -13.41428 -13.09560 -12.76554 -12.48943 -12.44977 -12.14405 -11.92444 -11.78825 -11.47248 -11.28510 -11.09714 -10.88917 -10.55103 -10.22032 -10.12182 -9.90283 -9.65752 -9.29715 -9.24987 -9.23623 -8.86303 -8.38927 -8.09658 -7.64920 -6.00252 -4.04987 0.87163 1.41989 2.37132 2.88322 3.05833 3.25041 3.36025 3.40826 3.45570 3.73298 4.04193 4.37437 4.53058 4.65120 4.78873 5.00456 5.04211 5.14034 5.20701 5.33305 5.34687 5.37590 5.44039 5.49789 5.56988 5.67630 5.88295 5.94680 6.11096 6.24053 6.27856 6.31594 6.43930 6.61814 6.72545 6.78092 6.90188 7.15773 7.36377 7.39821 7.51168 7.65792 7.96902 8.22599 8.25952 8.53979 8.94952 9.21380 9.60252 11.07713 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004064 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.561975 B = 6888.085345 C = 9143.220044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.601 5.601 5 C 0.262 3.738 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.696 3.304 15 O -0.560 6.560 16 N -0.697 5.697 17 C 0.174 3.826 18 C -0.131 4.131 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.120 4.120 22 C 0.556 3.444 23 O -0.521 6.521 24 N -0.737 5.737 25 C 0.088 3.912 26 C -0.061 4.061 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.399 0.601 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.967 -12.927 -15.986 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.013 3.987 4 N -0.335 5.335 5 C 0.143 3.857 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.398 3.602 15 O -0.435 6.435 16 N -0.347 5.347 17 C 0.077 3.923 18 C -0.153 4.153 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.124 4.124 22 C 0.343 3.657 23 O -0.397 6.397 24 N -0.390 5.390 25 C -0.056 4.056 26 C -0.082 4.082 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.248 -12.087 -14.441 21.439 hybrid contribution -0.148 0.542 -0.567 0.798 sum 10.100 -11.545 -15.008 21.460 Atomic orbital electron populations 1.23828 0.95805 1.01838 1.00130 1.23441 0.96504 0.98925 1.00280 1.20537 0.93219 0.95745 0.89235 1.47599 1.08675 1.62987 1.14259 1.19246 0.95241 0.93609 0.77585 1.21411 1.40647 0.93335 1.01353 0.92484 1.24904 0.94990 0.98743 0.95272 1.69919 1.41977 1.36268 1.05166 0.86571 0.78955 0.84901 0.77088 1.20298 1.21183 1.20084 1.15988 0.83346 0.78746 0.82154 1.90945 1.52442 1.60919 1.39213 1.42998 1.15386 1.63814 1.12452 1.17473 0.84523 0.92808 0.97447 1.21062 0.98253 0.94658 1.01283 1.20750 0.92005 1.00052 0.99965 1.21105 0.99021 0.96351 0.97096 1.19733 0.93836 0.98616 1.00184 1.18374 0.82683 0.82908 0.81744 1.90849 1.84129 1.27084 1.37594 1.45682 1.08841 1.36296 1.48164 1.21529 0.87516 0.99644 0.96868 1.21629 0.89083 0.99826 0.97658 0.88195 0.88734 0.87786 0.88947 0.91562 0.94723 0.93683 0.92666 0.76009 0.85479 0.85343 0.86074 0.76589 0.92075 0.90751 0.92144 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.17 -2.35 9.85 -36.03 -0.35 -2.71 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.60 -12.74 2.44 -182.19 -0.44 -13.19 16 5 C 0.26 6.92 5.16 -5.19 -0.03 6.89 16 6 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 10 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.70 14.96 8.12 -86.92 -0.71 14.25 16 15 O -0.56 -14.71 13.36 5.29 0.07 -14.64 16 16 N -0.70 -11.18 5.21 -14.25 -0.07 -11.25 16 17 C 0.17 2.68 6.30 -83.73 -0.53 2.16 16 18 C -0.13 -1.48 9.96 -39.32 -0.39 -1.87 16 19 C -0.11 -1.04 10.02 -39.67 -0.40 -1.44 16 20 C -0.12 -1.21 9.54 -39.16 -0.37 -1.58 16 21 C -0.12 -1.77 5.87 -104.99 -0.62 -2.39 16 22 C 0.56 8.68 7.77 -12.32 -0.10 8.59 16 23 O -0.52 -10.76 16.35 5.32 0.09 -10.68 16 24 N -0.74 -7.77 5.66 -68.04 -0.39 -8.16 16 25 C 0.09 0.80 10.70 59.84 0.64 1.44 16 26 C -0.06 -1.09 8.23 -38.98 -0.32 -1.41 16 27 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 28 H 0.09 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.10 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.09 1.52 7.72 -51.93 -0.40 1.11 16 31 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 32 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.40 5.02 6.52 -40.82 -0.27 4.75 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.80 6.40 -52.49 -0.34 0.47 16 39 H 0.40 2.77 6.86 -40.82 -0.28 2.49 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.16 3.59 5.82 -52.49 -0.31 3.29 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -37.64 369.23 -8.31 -45.95 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.64 Total: 6.77 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -3.20 Total: 8.48 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.17 Total: -58.83 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.16 Total: -25.32 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.64 -8.31 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292536693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.385 kcal (2) G-P(sol) polarization free energy of solvation -37.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds