Wall clock time and date at job start Tue Mar 31 2020 11:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99530 * 2 1 4 4 N 1.46501 * 109.46899 * 124.99519 * 3 2 1 5 5 C 1.46499 * 120.00230 * 269.99230 * 4 3 2 6 6 C 1.50700 * 109.47354 * 270.00300 * 5 4 3 7 7 H 1.08000 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99712 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00229 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99755 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47020 * 59.99875 * 10 8 6 12 12 H 1.48497 * 109.47073 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46946 * 299.99990 * 10 8 6 14 14 C 1.34778 * 119.99672 * 89.99875 * 4 3 2 15 15 O 1.21590 * 119.99553 * 179.97438 * 14 4 3 16 16 N 1.34771 * 120.00513 * 359.97438 * 14 4 3 17 17 C 1.39975 * 120.00350 * 184.59235 * 16 14 4 18 18 C 1.38989 * 120.00133 * 144.88319 * 17 16 14 19 19 C 1.38206 * 120.22613 * 180.02562 * 18 17 16 20 20 C 1.38023 * 120.22430 * 359.97438 * 19 18 17 21 21 C 1.39581 * 119.99226 * 0.05263 * 20 19 18 22 22 C 1.47858 * 120.10988 * 179.97438 * 21 20 19 23 23 O 1.21556 * 119.99756 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00370 * 359.95333 * 22 21 20 25 25 C 1.46489 * 120.00106 * 180.02562 * 24 22 21 26 26 C 1.38589 * 119.99853 * 324.90485 * 17 16 14 27 27 H 1.07994 * 120.00507 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99870 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.00110 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.47589 * 4.99397 * 3 2 1 31 31 H 1.09002 * 109.46757 * 244.99190 * 3 2 1 32 32 H 1.08999 * 109.46603 * 30.00442 * 5 4 3 33 33 H 1.09001 * 109.46683 * 149.99858 * 5 4 3 34 34 H 0.97001 * 120.00463 * 179.97438 * 9 8 6 35 35 H 0.96999 * 119.99990 * 4.59361 * 16 14 4 36 36 H 1.08002 * 119.88427 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.89178 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.00780 * 180.02562 * 20 19 18 39 39 H 0.96999 * 119.99586 * 359.97438 * 24 22 21 40 40 H 1.09000 * 109.47678 * 59.99794 * 25 24 22 41 41 H 1.09005 * 109.47320 * 179.97438 * 25 24 22 42 42 H 1.09004 * 109.47076 * 299.99474 * 25 24 22 43 43 H 1.08001 * 120.11043 * 359.70584 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5586 1.8652 2.4249 6 6 2.8440 3.3439 2.4803 7 1 3.3031 3.8372 1.6364 8 6 2.5181 4.0670 3.6081 9 7 1.9586 3.4663 4.6355 10 14 2.8712 5.9001 3.6766 11 1 2.1354 6.5870 2.5848 12 1 2.4304 6.4404 4.9876 13 1 4.3291 6.1298 3.5119 14 6 4.2495 0.8663 0.9825 15 8 5.0217 0.8891 1.9215 16 7 4.6496 0.3755 -0.2071 17 6 5.9208 -0.1960 -0.3368 18 6 6.1120 -1.2807 -1.1845 19 6 7.3651 -1.8488 -1.3156 20 6 8.4352 -1.3426 -0.6060 21 6 8.2535 -0.2539 0.2484 22 6 9.3980 0.2902 1.0103 23 8 9.2375 1.2387 1.7534 24 7 10.6189 -0.2657 0.8811 25 6 11.7526 0.2730 1.6364 26 6 6.9887 0.3196 0.3805 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0894 31 1 2.6213 1.4026 -0.9314 32 1 1.4885 1.6969 2.5458 33 1 3.0987 1.3605 3.2260 34 1 1.7297 3.9749 5.4291 35 1 4.0567 0.4182 -0.9736 36 1 5.2785 -1.6809 -1.7427 37 1 7.5074 -2.6918 -1.9756 38 1 9.4129 -1.7890 -0.7114 39 1 10.7468 -1.0230 0.2886 40 1 11.5437 0.2043 2.7040 41 1 12.6496 -0.3013 1.4044 42 1 11.9083 1.3166 1.3630 43 1 6.8431 1.1651 1.0364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292536693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:40 Heat of formation + Delta-G solvation = -27.875819 kcal Electronic energy + Delta-G solvation = -26065.952508 eV Core-core repulsion = 22304.283658 eV Total energy + Delta-G solvation = -3761.668850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85600 -40.93812 -39.29203 -37.34799 -36.04547 -35.67284 -34.96802 -33.74397 -32.20651 -30.93847 -29.25407 -27.89098 -26.97288 -25.24886 -24.46798 -23.34705 -21.67473 -21.35257 -20.65585 -19.73707 -18.86367 -18.56518 -17.62979 -17.30121 -16.89598 -16.69662 -16.50988 -16.30488 -15.98776 -15.81437 -15.28408 -14.94020 -14.75735 -14.65138 -14.34864 -14.15339 -14.10301 -13.52998 -13.35428 -13.20125 -13.11563 -12.92792 -12.76779 -12.64051 -12.54811 -12.28665 -12.21796 -11.73983 -11.50067 -11.14599 -10.95801 -10.66387 -10.35032 -10.30847 -9.87443 -9.64642 -9.07276 -8.24066 -6.38763 -0.16362 0.37769 1.24528 1.32545 1.38416 1.44950 1.72573 1.83949 2.15594 2.19927 2.37212 2.91516 3.01332 3.06312 3.71486 3.95561 4.01343 4.14164 4.18758 4.24660 4.31430 4.41628 4.45740 4.57459 4.59602 4.76156 4.87517 4.91637 4.97228 5.04261 5.16256 5.30339 5.33148 5.33964 5.39177 5.48735 5.52908 5.68833 5.72767 5.90594 6.00073 6.03908 6.05958 6.49409 6.69473 7.01092 7.17579 7.28163 7.60313 8.82445 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004064 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.561975 B = 6888.085345 C = 9143.220044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.607 5.607 5 C 0.283 3.717 6 C -0.546 4.546 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.256 1.256 12 H -0.275 1.275 13 H -0.286 1.286 14 C 0.691 3.309 15 O -0.621 6.621 16 N -0.674 5.674 17 C 0.142 3.858 18 C -0.110 4.110 19 C -0.093 4.093 20 C -0.092 4.092 21 C -0.140 4.140 22 C 0.545 3.455 23 O -0.592 6.592 24 N -0.711 5.711 25 C 0.082 3.918 26 C -0.102 4.102 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.030 0.970 33 H -0.006 1.006 34 H 0.268 0.732 35 H 0.421 0.579 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.170 0.830 39 H 0.421 0.579 40 H 0.043 0.957 41 H 0.125 0.875 42 H 0.048 0.952 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -15.673 -19.896 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.011 3.989 4 N -0.340 5.340 5 C 0.161 3.839 6 C -0.585 4.585 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.788 3.212 11 H -0.180 1.180 12 H -0.199 1.199 13 H -0.212 1.212 14 C 0.393 3.607 15 O -0.500 6.500 16 N -0.326 5.326 17 C 0.047 3.953 18 C -0.130 4.130 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.144 4.144 22 C 0.334 3.666 23 O -0.473 6.473 24 N -0.364 5.364 25 C -0.061 4.061 26 C -0.124 4.124 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.012 0.988 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.184 0.816 37 H 0.202 0.798 38 H 0.187 0.813 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.143 0.857 42 H 0.066 0.934 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.052 -14.906 -18.474 26.184 hybrid contribution -0.301 1.260 0.573 1.416 sum 10.751 -13.646 -17.901 24.945 Atomic orbital electron populations 1.24064 0.95432 1.02995 0.97660 1.23292 0.96865 0.97949 1.02420 1.20809 0.92717 0.96993 0.88385 1.47414 1.09727 1.62845 1.14052 1.18607 0.93868 0.92272 0.79137 1.21697 1.40660 0.94622 1.01487 0.93171 1.25798 0.94613 1.03613 0.94801 1.70031 1.42691 1.38115 1.05699 0.85535 0.78145 0.79330 0.78194 1.18005 1.19936 1.21172 1.16208 0.82781 0.78642 0.83113 1.90919 1.54082 1.63181 1.41844 1.42561 1.16119 1.62995 1.10915 1.17751 0.83112 0.94972 0.99451 1.21516 1.00558 0.92068 0.98886 1.21421 0.90345 1.00270 0.99014 1.21629 1.01776 0.93521 0.94152 1.19785 0.92182 1.00508 1.01910 1.18792 0.84418 0.82303 0.81111 1.90809 1.85335 1.30385 1.40791 1.45526 1.07454 1.35918 1.47491 1.21736 0.88530 1.00064 0.95776 1.21285 0.92126 0.99884 0.99148 0.88227 0.86379 0.86816 0.89865 0.88287 0.95244 0.98762 0.92341 0.73830 0.81632 0.79839 0.81293 0.73987 0.93807 0.85661 0.93350 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 14.32 67.78 0.97 -2.81 16 2 C -0.19 -4.87 9.85 25.65 0.25 -4.62 16 3 C 0.13 4.20 5.65 85.63 0.48 4.69 16 4 N -0.61 -27.22 2.44 -848.58 -2.07 -29.29 16 5 C 0.28 16.02 5.16 85.63 0.44 16.46 16 6 C -0.55 -33.15 9.39 25.60 0.24 -32.91 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.67 5.46 84.66 0.46 1.13 16 9 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 10 Si 0.96 47.44 29.54 68.60 2.03 49.47 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 14 C 0.69 31.85 8.12 179.06 1.45 33.31 16 15 O -0.62 -36.17 13.36 -4.00 -0.05 -36.23 16 16 N -0.67 -22.16 5.21 -317.28 -1.65 -23.81 16 17 C 0.14 4.41 6.30 38.10 0.24 4.65 16 18 C -0.11 -2.03 9.96 22.44 0.22 -1.81 16 19 C -0.09 -1.22 10.02 22.21 0.22 -1.00 16 20 C -0.09 -1.53 9.54 22.54 0.22 -1.31 16 21 C -0.14 -4.19 5.87 -20.10 -0.12 -4.31 16 22 C 0.55 17.91 7.77 86.79 0.67 18.59 16 23 O -0.59 -27.18 16.35 -3.89 -0.06 -27.24 16 24 N -0.71 -14.11 5.66 -487.47 -2.76 -16.87 16 25 C 0.08 1.42 10.70 127.77 1.37 2.79 16 26 C -0.10 -3.98 8.23 22.66 0.19 -3.80 16 27 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 28 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.11 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.08 2.77 7.72 -2.39 -0.02 2.75 16 31 H 0.10 2.40 6.30 -2.39 -0.02 2.39 16 32 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 33 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.42 10.04 6.52 -92.71 -0.60 9.44 16 36 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 38 H 0.17 1.14 6.40 -2.91 -0.02 1.12 16 39 H 0.42 4.25 6.86 -92.71 -0.64 3.62 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 4.90 5.82 -2.91 -0.02 4.88 16 Total: -1.00 -96.73 369.23 2.83 -93.90 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -0.19 Total: 18.87 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 7.32 Total: 29.04 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -6.20 Total: -127.81 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -0.12 Total: -63.47 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -96.73 2.83 -93.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292536693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.023 kcal (2) G-P(sol) polarization free energy of solvation -96.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds