Wall clock time and date at job start Tue Mar 31 2020 11:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00349 * 2 1 4 4 N 1.46497 * 109.47163 * 124.99933 * 3 2 1 5 5 C 1.46501 * 120.00281 * 269.99868 * 4 3 2 6 6 C 1.50693 * 109.47330 * 270.00334 * 5 4 3 7 7 H 1.07998 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00073 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99944 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47124 * 90.00135 * 10 8 6 12 12 H 1.48495 * 109.47529 * 210.00259 * 10 8 6 13 13 H 1.48503 * 109.47345 * 330.00510 * 10 8 6 14 14 C 1.34775 * 119.99848 * 90.00144 * 4 3 2 15 15 O 1.21595 * 119.99922 * 179.97438 * 14 4 3 16 16 N 1.34776 * 119.99891 * 0.02562 * 14 4 3 17 17 C 1.40113 * 119.99831 * 184.59465 * 16 14 4 18 18 C 1.38864 * 120.00083 * 324.89891 * 17 16 14 19 19 C 1.38051 * 120.00253 * 180.28101 * 18 17 16 20 20 C 1.38863 * 119.99882 * 359.44356 * 19 18 17 21 21 N 1.40085 * 120.00105 * 180.27660 * 20 19 18 22 22 C 1.34775 * 120.00149 * 35.36833 * 21 20 19 23 23 C 1.50697 * 120.00511 * 175.36283 * 22 21 20 24 24 O 1.21301 * 119.99999 * 355.36586 * 22 21 20 25 25 C 1.38866 * 119.99745 * 0.57969 * 20 19 18 26 26 C 1.38049 * 119.99929 * 359.69907 * 25 20 19 27 27 H 1.07996 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00043 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99955 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46740 * 4.99724 * 3 2 1 31 31 H 1.08999 * 109.47240 * 245.00768 * 3 2 1 32 32 H 1.09010 * 109.46575 * 30.00311 * 5 4 3 33 33 H 1.09000 * 109.47171 * 149.99653 * 5 4 3 34 34 H 0.96999 * 120.00374 * 179.97438 * 9 8 6 35 35 H 0.96995 * 120.00543 * 4.58498 * 16 14 4 36 36 H 1.08002 * 119.99943 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.00020 * 179.72422 * 19 18 17 38 38 H 0.97003 * 120.00348 * 215.35989 * 21 20 19 39 39 H 1.09001 * 109.47102 * 89.99686 * 23 22 21 40 40 H 1.08999 * 109.47639 * 210.00015 * 23 22 21 41 41 H 1.09006 * 109.47249 * 330.00224 * 23 22 21 42 42 H 1.08003 * 119.99962 * 179.67621 * 25 20 19 43 43 H 1.08000 * 119.99850 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8649 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3042 3.8368 1.6368 8 6 2.5186 4.0666 3.6083 9 7 1.9593 3.4658 4.6357 10 14 2.8731 5.8993 3.6774 11 1 1.7009 6.6500 3.1601 12 1 3.1365 6.3000 5.0828 13 1 4.0637 6.2051 2.8441 14 6 4.2497 0.8660 0.9823 15 8 5.0220 0.8886 1.9213 16 7 4.6499 0.3761 -0.2077 17 6 5.9223 -0.1961 -0.3377 18 6 6.9923 0.3197 0.3817 19 6 8.2471 -0.2403 0.2492 20 6 8.4371 -1.3268 -0.5945 21 7 9.7092 -1.8987 -0.7245 22 6 10.5330 -1.9590 0.3405 23 6 11.8587 -2.6667 0.2286 24 8 10.2073 -1.4436 1.3892 25 6 7.3672 -1.8422 -1.3142 26 6 6.1135 -1.2785 -1.1862 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4888 1.6965 2.5459 33 1 3.0991 1.3602 3.2259 34 1 1.7304 3.9744 5.4293 35 1 4.0572 0.4194 -0.9742 36 1 6.8438 1.1621 1.0410 37 1 9.0802 0.1636 0.8054 38 1 9.9972 -2.2516 -1.5809 39 1 12.6227 -1.9585 -0.0924 40 1 12.1324 -3.0813 1.1988 41 1 11.7802 -3.4721 -0.5016 42 1 7.5159 -2.6839 -1.9745 43 1 5.2816 -1.6792 -1.7462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292611620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:50 Heat of formation + Delta-G solvation = -0.573696 kcal Electronic energy + Delta-G solvation = -25801.591996 eV Core-core repulsion = 22041.107055 eV Total energy + Delta-G solvation = -3760.484941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63455 -39.88944 -38.16339 -35.89971 -35.13029 -33.64552 -33.07687 -32.05849 -30.82682 -30.46915 -28.19598 -27.08184 -25.45116 -23.33008 -23.05006 -21.92199 -20.56836 -20.07669 -19.26517 -18.03981 -17.60349 -16.96667 -16.91964 -16.43117 -15.65269 -15.19953 -14.94367 -14.57632 -14.39106 -14.29333 -13.95873 -13.72810 -13.44268 -13.25617 -13.04692 -12.82945 -12.64372 -12.47629 -12.39019 -12.14517 -11.78458 -11.47037 -11.27574 -11.10015 -10.87948 -10.58330 -10.50508 -10.15370 -9.92599 -9.66431 -9.46080 -9.23870 -9.21589 -8.71871 -8.40793 -7.81388 -7.42750 -6.01465 -4.06214 1.36434 1.55833 2.39423 2.44551 2.93643 3.29125 3.32103 3.39367 3.44507 3.73790 4.10150 4.40264 4.49994 4.54625 4.84519 4.97829 5.04225 5.06825 5.16618 5.32506 5.36461 5.43287 5.48726 5.52180 5.61810 5.71751 5.94035 5.95782 6.12546 6.18931 6.35893 6.52170 6.68430 6.75513 6.82312 6.86399 6.93976 7.24329 7.33091 7.39182 7.53264 7.69483 7.96355 7.97945 8.25540 8.58909 8.94591 9.25999 9.59074 11.06470 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.003239 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.484645 B = 8643.156586 C =10247.040178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.137 3.863 4 N -0.603 5.603 5 C 0.262 3.738 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.698 3.302 15 O -0.564 6.564 16 N -0.697 5.697 17 C 0.169 3.831 18 C -0.103 4.103 19 C -0.098 4.098 20 C 0.108 3.892 21 N -0.672 5.672 22 C 0.504 3.496 23 C -0.170 4.170 24 O -0.522 6.522 25 C -0.125 4.125 26 C -0.139 4.139 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.401 0.599 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.407 0.593 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.553 -13.188 -17.925 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.013 3.987 4 N -0.337 5.337 5 C 0.142 3.858 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.400 3.600 15 O -0.440 6.440 16 N -0.346 5.346 17 C 0.072 3.928 18 C -0.124 4.124 19 C -0.119 4.119 20 C 0.014 3.986 21 N -0.319 5.319 22 C 0.292 3.708 23 C -0.230 4.230 24 O -0.397 6.397 25 C -0.146 4.146 26 C -0.161 4.161 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.243 0.757 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.771 -12.733 -16.168 23.228 hybrid contribution -0.154 0.716 -0.732 1.035 sum 10.618 -12.017 -16.900 23.297 Atomic orbital electron populations 1.23822 0.95804 1.01809 1.00260 1.23452 0.96498 0.98985 1.00160 1.20524 0.93193 0.95677 0.89289 1.47589 1.08775 1.63145 1.14191 1.19238 0.95246 0.93581 0.77690 1.21449 1.40483 0.93354 1.01284 0.92460 1.24923 0.95093 0.98734 0.95307 1.69931 1.42073 1.36134 1.05174 0.86502 0.78557 0.85020 0.77365 1.20713 1.21094 1.19892 1.15961 0.83226 0.78639 0.82205 1.90911 1.52570 1.61176 1.39353 1.42996 1.15665 1.63823 1.12163 1.17614 0.84436 0.93043 0.97691 1.21427 0.90239 1.01103 0.99598 1.21174 0.98080 0.94136 0.98476 1.17688 0.84506 0.95192 1.01226 1.43546 1.14433 1.60658 1.13215 1.20999 0.86462 0.80124 0.83224 1.21880 0.94216 1.01444 1.05426 1.90795 1.74993 1.45255 1.28681 1.20518 0.91266 1.00457 1.02365 1.20605 0.97247 0.95685 1.02569 0.88217 0.88754 0.87781 0.89025 0.91550 0.94773 0.93698 0.92716 0.76264 0.83370 0.84497 0.75736 0.88653 0.88552 0.90072 0.85838 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 14.32 29.01 0.42 -1.86 16 2 C -0.17 -2.40 9.85 -36.03 -0.35 -2.75 16 3 C 0.14 2.19 5.65 -5.20 -0.03 2.16 16 4 N -0.60 -12.84 2.44 -182.19 -0.44 -13.29 16 5 C 0.26 6.90 5.16 -5.20 -0.03 6.87 16 6 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 10 Si 0.90 22.11 29.54 -169.99 -5.02 17.08 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.70 15.08 8.12 -86.92 -0.71 14.38 16 15 O -0.56 -14.76 13.35 5.28 0.07 -14.69 16 16 N -0.70 -11.45 5.22 -14.18 -0.07 -11.52 16 17 C 0.17 2.71 6.30 -83.61 -0.53 2.18 16 18 C -0.10 -1.85 8.69 -39.42 -0.34 -2.19 16 19 C -0.10 -1.58 8.69 -39.42 -0.34 -1.93 16 20 C 0.11 1.38 6.30 -83.62 -0.53 0.86 16 21 N -0.67 -6.29 5.34 -9.83 -0.05 -6.34 16 22 C 0.50 5.44 7.78 -10.99 -0.09 5.36 16 23 C -0.17 -0.95 10.31 36.00 0.37 -0.57 16 24 O -0.52 -8.51 14.55 5.54 0.08 -8.42 16 25 C -0.13 -1.40 9.96 -39.42 -0.39 -1.79 16 26 C -0.14 -1.73 9.96 -39.42 -0.39 -2.12 16 27 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 28 H 0.09 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.10 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 31 H 0.07 0.85 6.30 -51.93 -0.33 0.53 16 32 H 0.03 0.91 8.07 -51.92 -0.42 0.49 16 33 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.40 5.18 6.52 -40.82 -0.27 4.92 16 36 H 0.15 3.13 6.22 -52.49 -0.33 2.80 16 37 H 0.14 2.34 6.24 -52.48 -0.33 2.01 16 38 H 0.41 2.08 8.82 -40.82 -0.36 1.72 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -37.19 368.91 -8.23 -45.42 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.73 Total: 7.35 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -3.36 Total: 4.95 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.17 Total: -57.25 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.15 Total: -23.11 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.19 -8.23 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292611620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.847 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds