Wall clock time and date at job start Tue Mar 31 2020 11:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00349 * 2 1 4 4 N 1.46497 * 109.47163 * 124.99933 * 3 2 1 5 5 C 1.46501 * 120.00281 * 269.99868 * 4 3 2 6 6 C 1.50693 * 109.47330 * 270.00334 * 5 4 3 7 7 H 1.07998 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00073 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99944 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47124 * 90.00135 * 10 8 6 12 12 H 1.48495 * 109.47529 * 210.00259 * 10 8 6 13 13 H 1.48503 * 109.47345 * 330.00510 * 10 8 6 14 14 C 1.34775 * 119.99848 * 90.00144 * 4 3 2 15 15 O 1.21595 * 119.99922 * 179.97438 * 14 4 3 16 16 N 1.34776 * 119.99891 * 0.02562 * 14 4 3 17 17 C 1.40113 * 119.99831 * 184.59465 * 16 14 4 18 18 C 1.38864 * 120.00083 * 324.89891 * 17 16 14 19 19 C 1.38051 * 120.00253 * 180.28101 * 18 17 16 20 20 C 1.38863 * 119.99882 * 359.44356 * 19 18 17 21 21 N 1.40085 * 120.00105 * 180.27660 * 20 19 18 22 22 C 1.34775 * 120.00149 * 35.36833 * 21 20 19 23 23 C 1.50697 * 120.00511 * 175.36283 * 22 21 20 24 24 O 1.21301 * 119.99999 * 355.36586 * 22 21 20 25 25 C 1.38866 * 119.99745 * 0.57969 * 20 19 18 26 26 C 1.38049 * 119.99929 * 359.69907 * 25 20 19 27 27 H 1.07996 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00043 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99955 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46740 * 4.99724 * 3 2 1 31 31 H 1.08999 * 109.47240 * 245.00768 * 3 2 1 32 32 H 1.09010 * 109.46575 * 30.00311 * 5 4 3 33 33 H 1.09000 * 109.47171 * 149.99653 * 5 4 3 34 34 H 0.96999 * 120.00374 * 179.97438 * 9 8 6 35 35 H 0.96995 * 120.00543 * 4.58498 * 16 14 4 36 36 H 1.08002 * 119.99943 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.00020 * 179.72422 * 19 18 17 38 38 H 0.97003 * 120.00348 * 215.35989 * 21 20 19 39 39 H 1.09001 * 109.47102 * 89.99686 * 23 22 21 40 40 H 1.08999 * 109.47639 * 210.00015 * 23 22 21 41 41 H 1.09006 * 109.47249 * 330.00224 * 23 22 21 42 42 H 1.08003 * 119.99962 * 179.67621 * 25 20 19 43 43 H 1.08000 * 119.99850 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8649 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3042 3.8368 1.6368 8 6 2.5186 4.0666 3.6083 9 7 1.9593 3.4658 4.6357 10 14 2.8731 5.8993 3.6774 11 1 1.7009 6.6500 3.1601 12 1 3.1365 6.3000 5.0828 13 1 4.0637 6.2051 2.8441 14 6 4.2497 0.8660 0.9823 15 8 5.0220 0.8886 1.9213 16 7 4.6499 0.3761 -0.2077 17 6 5.9223 -0.1961 -0.3377 18 6 6.9923 0.3197 0.3817 19 6 8.2471 -0.2403 0.2492 20 6 8.4371 -1.3268 -0.5945 21 7 9.7092 -1.8987 -0.7245 22 6 10.5330 -1.9590 0.3405 23 6 11.8587 -2.6667 0.2286 24 8 10.2073 -1.4436 1.3892 25 6 7.3672 -1.8422 -1.3142 26 6 6.1135 -1.2785 -1.1862 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4888 1.6965 2.5459 33 1 3.0991 1.3602 3.2259 34 1 1.7304 3.9744 5.4293 35 1 4.0572 0.4194 -0.9742 36 1 6.8438 1.1621 1.0410 37 1 9.0802 0.1636 0.8054 38 1 9.9972 -2.2516 -1.5809 39 1 12.6227 -1.9585 -0.0924 40 1 12.1324 -3.0813 1.1988 41 1 11.7802 -3.4721 -0.5016 42 1 7.5159 -2.6839 -1.9745 43 1 5.2816 -1.6792 -1.7462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292611620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:49 Heat of formation + Delta-G solvation = -27.145295 kcal Electronic energy + Delta-G solvation = -25802.744227 eV Core-core repulsion = 22041.107055 eV Total energy + Delta-G solvation = -3761.637172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84703 -41.17185 -39.38105 -37.37819 -36.43782 -35.21979 -34.62112 -33.69987 -31.92505 -31.31275 -29.76163 -28.45173 -26.93564 -25.14687 -24.18655 -23.27117 -21.52850 -21.37547 -20.63806 -19.37652 -18.76362 -18.52554 -18.35858 -17.83342 -16.91081 -16.67704 -16.37322 -16.04304 -15.78692 -15.39386 -15.36633 -14.91553 -14.75178 -14.51930 -14.25287 -14.10639 -13.85719 -13.71701 -13.33012 -13.24994 -13.09487 -13.04562 -12.88712 -12.65394 -12.57469 -12.27496 -12.23072 -11.73524 -11.67342 -10.99258 -10.91086 -10.67165 -10.63976 -10.34445 -9.88052 -9.55033 -8.65515 -8.22258 -6.37509 0.22621 0.44468 1.25463 1.34554 1.38328 1.48391 1.57077 1.84010 2.14016 2.21780 2.38377 2.88176 3.03516 3.07967 3.81733 3.98554 4.02798 4.05953 4.19718 4.32694 4.40594 4.44013 4.52576 4.61252 4.67556 4.77547 4.81058 4.93907 5.04689 5.11717 5.13244 5.18867 5.33434 5.38192 5.50010 5.54496 5.62907 5.69860 5.74042 5.91692 6.05284 6.08609 6.11319 6.50154 6.71308 7.04500 7.21352 7.29602 7.63106 8.84096 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.003239 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.484645 B = 8643.156586 C =10247.040178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.187 4.187 3 C 0.133 3.867 4 N -0.608 5.608 5 C 0.281 3.719 6 C -0.542 4.542 7 H 0.052 0.948 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.260 1.260 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.693 3.307 15 O -0.622 6.622 16 N -0.673 5.673 17 C 0.141 3.859 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.113 3.887 21 N -0.655 5.655 22 C 0.496 3.504 23 C -0.158 4.158 24 O -0.588 6.588 25 C -0.106 4.106 26 C -0.119 4.119 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.028 0.972 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.420 0.580 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.433 0.567 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.178 0.822 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -15.267 -21.907 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.011 3.989 4 N -0.341 5.341 5 C 0.160 3.840 6 C -0.581 4.581 7 H 0.070 0.930 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.201 1.201 14 C 0.395 3.605 15 O -0.502 6.502 16 N -0.324 5.324 17 C 0.045 3.955 18 C -0.154 4.154 19 C -0.141 4.141 20 C 0.018 3.982 21 N -0.303 5.303 22 C 0.286 3.714 23 C -0.217 4.217 24 O -0.468 6.468 25 C -0.126 4.126 26 C -0.140 4.140 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.273 0.727 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.195 0.805 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.987 -14.858 -20.291 27.445 hybrid contribution -0.162 1.265 0.452 1.353 sum 10.825 -13.594 -19.839 26.374 Atomic orbital electron populations 1.24059 0.95423 1.02983 0.97718 1.23306 0.96888 0.98029 1.02377 1.20800 0.92725 0.96876 0.88458 1.47414 1.09756 1.62927 1.14025 1.18623 0.93831 0.92423 0.79146 1.21708 1.40505 0.94456 1.01433 0.92989 1.25837 0.94691 1.03725 0.94804 1.70049 1.42848 1.38070 1.05761 0.85425 0.78829 0.79202 0.77397 1.18459 1.20688 1.20108 1.16172 0.82740 0.78569 0.83067 1.90883 1.54162 1.63360 1.41828 1.42568 1.16160 1.62898 1.10808 1.17837 0.83247 0.94985 0.99400 1.21113 0.92386 1.01168 1.00772 1.21005 0.96640 0.96205 1.00252 1.17834 0.86806 0.93729 0.99810 1.43496 1.12965 1.59517 1.14317 1.22085 0.87870 0.79106 0.82301 1.21910 0.90969 1.02340 1.06498 1.90790 1.76561 1.48060 1.31346 1.21055 0.89611 1.00662 1.01288 1.21036 0.99163 0.93288 1.00482 0.88141 0.86478 0.86989 0.89790 0.88231 0.95416 0.98729 0.92389 0.73989 0.88300 0.86966 0.72681 0.86733 0.89043 0.86213 0.80508 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 14.32 67.78 0.97 -2.85 16 2 C -0.19 -4.94 9.85 25.64 0.25 -4.69 16 3 C 0.13 4.20 5.65 85.63 0.48 4.68 16 4 N -0.61 -27.00 2.44 -848.57 -2.07 -29.07 16 5 C 0.28 15.76 5.16 85.63 0.44 16.20 16 6 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 10 Si 0.97 46.41 29.54 68.60 2.03 48.43 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 14 C 0.69 31.63 8.12 179.06 1.45 33.08 16 15 O -0.62 -35.58 13.35 -4.02 -0.05 -35.64 16 16 N -0.67 -22.28 5.22 -317.04 -1.66 -23.93 16 17 C 0.14 4.54 6.30 38.12 0.24 4.78 16 18 C -0.13 -5.23 8.69 22.38 0.19 -5.03 16 19 C -0.12 -4.15 8.69 22.37 0.19 -3.96 16 20 C 0.11 2.74 6.30 38.12 0.24 2.98 16 21 N -0.65 -10.57 5.34 -303.38 -1.62 -12.19 16 22 C 0.50 10.22 7.78 87.66 0.68 10.90 16 23 C -0.16 -1.31 10.31 71.23 0.73 -0.58 16 24 O -0.59 -20.18 14.55 -3.10 -0.05 -20.23 16 25 C -0.11 -1.90 9.96 22.38 0.22 -1.67 16 26 C -0.12 -2.53 9.96 22.37 0.22 -2.31 16 27 H 0.10 2.33 7.84 -2.91 -0.02 2.30 16 28 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.11 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.08 2.76 7.72 -2.39 -0.02 2.74 16 31 H 0.10 2.40 6.30 -2.39 -0.02 2.38 16 32 H 0.03 1.56 8.07 -2.38 -0.02 1.55 16 33 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.42 10.16 6.52 -92.71 -0.60 9.56 16 36 H 0.10 4.80 6.22 -2.91 -0.02 4.78 16 37 H 0.11 4.34 6.24 -2.91 -0.02 4.32 16 38 H 0.43 2.44 8.82 -92.71 -0.82 1.62 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 42 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -92.14 368.91 3.53 -88.61 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.38 Total: 20.88 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 7.04 Total: 20.47 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -5.06 Total: -122.52 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.10 Total: -55.87 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -92.14 3.53 -88.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292611620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.468 kcal (2) G-P(sol) polarization free energy of solvation -92.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds