Wall clock time and date at job start Tue Mar 31 2020 11:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00245 * 2 1 4 4 H 1.08005 * 120.00032 * 213.43343 * 3 2 1 5 5 C 1.38814 * 119.99723 * 33.42358 * 3 2 1 6 6 N 1.31609 * 120.00404 * 355.48253 * 5 3 2 7 7 Si 1.86808 * 119.99408 * 175.48228 * 5 3 2 8 8 H 1.48495 * 109.47351 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46935 * 120.00463 * 7 5 3 10 10 H 1.48502 * 109.46656 * 240.00155 * 7 5 3 11 11 C 1.46504 * 119.99685 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.47281 * 89.99599 * 11 2 1 13 13 O 1.21295 * 119.99997 * 0.02562 * 12 11 2 14 14 N 1.34769 * 119.99830 * 180.27280 * 12 11 2 15 15 C 1.40072 * 120.00083 * 175.90139 * 14 12 11 16 16 C 1.38711 * 120.09483 * 34.22936 * 15 14 12 17 17 C 1.38208 * 119.99606 * 179.74759 * 16 15 14 18 18 C 1.38298 * 120.19332 * 0.56074 * 17 16 15 19 19 C 1.38199 * 120.20103 * 359.69813 * 18 17 16 20 20 C 1.38705 * 119.99752 * 0.02562 * 19 18 17 21 21 N 1.40074 * 120.09965 * 180.02562 * 20 19 18 22 22 C 1.46770 * 124.34624 * 89.97592 * 21 20 19 23 23 C 1.54476 * 105.47112 * 197.01951 * 22 21 20 24 24 C 1.54625 * 101.76655 * 334.58580 * 23 22 21 25 25 C 1.34415 * 124.35272 * 269.68558 * 21 20 19 26 26 O 1.21297 * 124.94301 * 359.56086 * 25 21 20 27 27 H 1.09003 * 109.46580 * 274.84165 * 1 2 3 28 28 H 1.08994 * 109.47324 * 34.83823 * 1 2 3 29 29 H 1.09000 * 109.47067 * 154.84202 * 1 2 3 30 30 H 0.96993 * 120.00728 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.47262 * 329.99624 * 11 2 1 32 32 H 1.09007 * 109.46933 * 209.99560 * 11 2 1 33 33 H 0.96994 * 120.00184 * 355.89576 * 14 12 11 34 34 H 1.07996 * 120.00179 * 0.02562 * 16 15 14 35 35 H 1.07999 * 119.90149 * 180.30064 * 17 16 15 36 36 H 1.08005 * 119.90154 * 179.71697 * 18 17 16 37 37 H 1.08001 * 120.00184 * 180.02562 * 19 18 17 38 38 H 1.08991 * 110.24709 * 316.02344 * 22 21 20 39 39 H 1.09001 * 110.24201 * 78.02223 * 22 21 20 40 40 H 1.08998 * 110.96984 * 92.70691 * 23 22 21 41 41 H 1.08999 * 110.96696 * 216.46785 * 23 22 21 42 42 H 1.09003 * 110.48421 * 143.47973 * 24 23 22 43 43 H 1.08996 * 110.49025 * 265.98528 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0958 1.2632 -0.5153 5 6 1.6279 2.2886 0.6622 6 7 0.4350 2.2211 1.2141 7 14 2.6189 3.8685 0.7699 8 1 3.9176 3.6867 0.0733 9 1 1.8624 4.9721 0.1257 10 1 2.8639 4.2028 2.1959 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7033 -1.4216 13 8 2.0549 -1.0201 -2.3432 14 7 3.1062 -2.8535 -1.6683 15 6 3.2646 -3.3009 -2.9862 16 6 3.4293 -2.3865 -4.0161 17 6 3.5906 -2.8303 -5.3150 18 6 3.5769 -4.1848 -5.5939 19 6 3.4080 -5.1028 -4.5747 20 6 3.2511 -4.6665 -3.2674 21 7 3.0803 -5.5951 -2.2327 22 6 4.1799 -6.1883 -1.4626 23 6 3.5756 -7.4306 -0.7713 24 6 2.0788 -7.0507 -0.6925 25 6 1.8881 -6.0532 -1.8138 26 8 0.8155 -5.7174 -2.2700 27 1 -0.3632 0.0867 1.0241 28 1 -0.3633 0.8434 -0.5870 29 1 -0.3633 -0.9302 -0.4369 30 1 0.0705 2.9914 1.6772 31 1 1.6084 -2.0287 0.5130 32 1 3.1500 -1.1387 0.5133 33 1 3.4699 -3.3715 -0.9333 34 1 3.4360 -1.3279 -3.8024 35 1 3.7236 -2.1172 -6.1150 36 1 3.6988 -4.5263 -6.6112 37 1 3.3982 -6.1598 -4.7961 38 1 4.9903 -6.4841 -2.1287 39 1 4.5428 -5.4808 -0.7170 40 1 3.7199 -8.3239 -1.3788 41 1 3.9966 -7.5660 0.2250 42 1 1.4534 -7.9295 -0.8495 43 1 1.8523 -6.5893 0.2687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299628634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:38 Heat of formation + Delta-G solvation = -25.025706 kcal Electronic energy + Delta-G solvation = -26816.773173 eV Core-core repulsion = 23055.227913 eV Total energy + Delta-G solvation = -3761.545260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11215 -40.93902 -39.36269 -37.48395 -37.13497 -35.71831 -33.87772 -33.42977 -31.23641 -30.03785 -28.62649 -28.48371 -27.90293 -24.54176 -24.17720 -23.09954 -22.65789 -21.35747 -20.79821 -19.15000 -18.71532 -18.14142 -18.02432 -17.50196 -16.90731 -16.45347 -16.33367 -16.06578 -15.66591 -15.51951 -15.02684 -14.97565 -14.84022 -14.72190 -14.57118 -13.93202 -13.77613 -13.72118 -13.50839 -13.23044 -12.86893 -12.79500 -12.64678 -12.59447 -12.38452 -12.32247 -12.17836 -11.90792 -11.84743 -11.43363 -11.02596 -10.95040 -10.62386 -9.97891 -9.83833 -9.14560 -8.76904 -7.92270 -5.50450 0.13111 0.31205 1.43284 1.44848 1.48453 1.55955 1.69212 1.89809 2.08531 2.47056 2.70756 3.23730 3.48023 3.60801 3.70674 3.85991 3.93783 4.07657 4.13859 4.20697 4.37745 4.43043 4.43450 4.50129 4.58826 4.68368 4.70848 4.73168 4.81966 4.89917 5.14539 5.18905 5.23953 5.24524 5.31060 5.44990 5.53432 5.58513 5.60300 5.62071 5.99841 6.09374 6.25815 6.44788 7.06558 7.12444 7.24948 7.71175 8.20717 9.12155 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003671 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.306359 B = 7626.481326 C = 8533.002312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.594 5.594 3 C -0.272 4.272 4 H 0.057 0.943 5 C -0.037 4.037 6 N -0.931 5.931 7 Si 0.974 3.026 8 H -0.269 1.269 9 H -0.293 1.293 10 H -0.278 1.278 11 C 0.138 3.862 12 C 0.478 3.522 13 O -0.552 6.552 14 N -0.665 5.665 15 C 0.140 3.860 16 C -0.146 4.146 17 C -0.099 4.099 18 C -0.126 4.126 19 C -0.096 4.096 20 C 0.098 3.902 21 N -0.575 5.575 22 C 0.091 3.909 23 C -0.112 4.112 24 C -0.147 4.147 25 C 0.502 3.498 26 O -0.584 6.584 27 H 0.024 0.976 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.253 0.747 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.143 -24.440 -4.943 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.314 5.314 3 C -0.402 4.402 4 H 0.075 0.925 5 C -0.233 4.233 6 N -0.576 5.576 7 Si 0.801 3.199 8 H -0.193 1.193 9 H -0.219 1.219 10 H -0.204 1.204 11 C 0.006 3.994 12 C 0.265 3.735 13 O -0.427 6.427 14 N -0.312 5.312 15 C 0.044 3.956 16 C -0.167 4.167 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.116 4.116 20 C 0.006 3.994 21 N -0.306 5.306 22 C -0.029 4.029 23 C -0.149 4.149 24 C -0.187 4.187 25 C 0.293 3.707 26 O -0.463 6.463 27 H 0.042 0.958 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.256 0.744 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.179 0.821 37 H 0.166 0.834 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.131 0.869 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.161 -23.553 -5.660 27.104 hybrid contribution -0.040 1.305 0.105 1.310 sum 12.121 -22.248 -5.554 25.937 Atomic orbital electron populations 1.20589 0.83097 0.94851 0.97778 1.43704 1.01784 1.01086 1.84858 1.19316 1.04208 0.89728 1.26905 0.92492 1.26064 0.97747 1.02350 0.97156 1.70189 1.17001 1.30710 1.39664 0.85125 0.78401 0.78792 0.77593 1.19313 1.21947 1.20424 1.20916 0.99572 0.89248 0.89625 1.23616 0.75394 0.79282 0.95214 1.90619 1.50583 1.53963 1.47553 1.43664 1.56212 1.24700 1.06633 1.18335 0.99210 0.92358 0.85737 1.21277 1.02164 0.99594 0.93633 1.21401 0.97728 0.97170 0.95482 1.21357 1.00750 0.91920 1.00436 1.21395 0.98431 1.01263 0.90464 1.17315 1.07156 0.85899 0.89041 1.45787 1.08905 1.41957 1.33927 1.22600 0.88845 0.95987 0.95470 1.22647 0.91558 0.96794 1.03934 1.22390 1.00740 0.98545 0.97002 1.22139 0.82520 0.82039 0.84036 1.90744 1.29950 1.63197 1.62404 0.95775 0.97320 0.97371 0.93789 0.88695 0.87747 0.74443 0.87007 0.83726 0.82065 0.83386 0.88322 0.89558 0.88442 0.85791 0.86925 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.01 8.97 127.77 1.15 11.15 16 2 N -0.59 -31.96 2.40 -731.27 -1.76 -33.71 16 3 C -0.27 -15.77 9.57 84.03 0.80 -14.96 16 4 H 0.06 3.32 7.83 -2.91 -0.02 3.29 16 5 C -0.04 -2.14 5.38 84.86 0.46 -1.68 16 6 N -0.93 -56.29 10.60 21.65 0.23 -56.06 16 7 Si 0.97 46.12 29.56 68.60 2.03 48.15 16 8 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 C 0.14 5.67 6.13 85.63 0.52 6.20 16 12 C 0.48 19.99 7.74 87.66 0.68 20.67 16 13 O -0.55 -28.60 13.84 -3.08 -0.04 -28.64 16 14 N -0.66 -21.31 5.17 -303.08 -1.57 -22.88 16 15 C 0.14 4.52 6.33 38.23 0.24 4.77 16 16 C -0.15 -4.97 8.70 22.38 0.19 -4.78 16 17 C -0.10 -2.59 10.04 22.28 0.22 -2.37 16 18 C -0.13 -2.63 10.04 22.27 0.22 -2.40 16 19 C -0.10 -2.13 9.96 22.37 0.22 -1.91 16 20 C 0.10 2.59 5.40 38.22 0.21 2.80 16 21 N -0.58 -11.90 2.43 -627.17 -1.52 -13.42 16 22 C 0.09 0.87 7.28 86.83 0.63 1.50 16 23 C -0.11 -0.52 7.18 31.65 0.23 -0.29 16 24 C -0.15 -1.81 6.86 30.59 0.21 -1.60 16 25 C 0.50 12.59 7.99 87.90 0.70 13.29 16 26 O -0.58 -22.21 17.71 -3.08 -0.05 -22.26 16 27 H 0.02 1.36 7.27 -2.39 -0.02 1.35 16 28 H 0.01 0.49 7.56 -2.39 -0.02 0.47 16 29 H 0.01 0.40 8.03 -2.39 -0.02 0.38 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.10 3.40 8.07 -2.39 -0.02 3.38 16 32 H 0.10 3.80 8.04 -2.38 -0.02 3.78 16 33 H 0.42 10.02 8.41 -92.71 -0.78 9.24 16 34 H 0.11 4.57 6.18 -2.91 -0.02 4.56 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.63 8.05 -2.39 -0.02 0.61 16 40 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -87.62 363.23 4.26 -83.36 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.25 Total: 15.09 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 6.69 Total: 30.38 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -4.61 Total: -126.06 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -0.10 Total: -50.90 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -87.62 4.26 -83.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299628634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.330 kcal (2) G-P(sol) polarization free energy of solvation -87.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds